| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,919,575 | C→G | 17.6% | A41P (GCC→CCC) ‡ | argI ← | ornithine carbamoyltransferase 1 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,919,575 | 0 | C | G | 17.6% | 148.7 / 25.4 | 68 | A41P (GCC→CCC) ‡ | argI | ornithine carbamoyltransferase 1 |
| Reads supporting (aligned to +/- strand): ref base C (21/35); new base G (3/9); total (24/44) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.18e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.94e-01 | |||||||||||
CGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGCGCGATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCTTATCGGCTTTCAGCTTCGCGGCTAACTGCAGCAGGCTGTTGAGTTC > minE/2919506‑2919641 | cGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGCGCGATGTTTTTACCAGTGAGTTTGGct > 1:3577608/1‑71 (MQ=255) aaGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGCGCGATGTTTTTACCAGTGAGTTTGGcttct > 1:1460845/1‑71 (MQ=255) gagCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGCGCGATGTTTTTACCAGTGAGTTTGGcttcttc < 1:2143960/71‑1 (MQ=255) gagCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGCGCGATGTTTTTACCAGTGAGTTTGGcttcttc < 1:1332095/71‑1 (MQ=255) agCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGCGCGATGTTTTTACCAGTGAGTTTGGcttcttct > 1:2330690/1‑71 (MQ=255) agCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGCGCGATGTTTTTACCAGTGAGTTTGGcttcttct < 1:3049360/71‑1 (MQ=255) gCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGCGCGATGTTTTTACCAGTGAGTTTGGcttcttctt > 1:2547126/1‑71 (MQ=255) cATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGCGCGATGTTTTTACCAGTGAGTTTGGcttcttctt < 1:2522935/70‑1 (MQ=255) tACGAGTCGAGTCTTTTTCGAAGATGAGCGCGATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCtt < 1:3063819/71‑1 (MQ=255) tACGAGTCGAGTCTTTTTCGAAGATGAGCGCGATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCtt < 1:2555359/71‑1 (MQ=255) cgagtcgagtCTTTTTCGAAGATGAGCGCGATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCttt > 1:1144197/1‑70 (MQ=255) cgagtcgagtCTTTTTCGAAGATGAGCGCGATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCttt < 1:1964499/70‑1 (MQ=255) gagtcgagtcTTTTTCGAAGATGAGCGCGATGTTTTTACCAGTGAGTTTGGcttcttctt < 1:2133161/60‑1 (MQ=255) gtcgagtcTTTTTCGAAGATGAGCGCGATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCtt < 1:3491272/71‑1 (MQ=255) gtcgagtcTTTTTCGAAGATGAGCGCGATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCtt < 1:156901/71‑1 (MQ=255) gtcgagtcTTTTTCGAAGATGAGCGCGATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCtt < 1:458861/71‑1 (MQ=255) gtcgagtcTTTTTCGAAGATGAGCCCGATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCt > 1:1430430/1‑70 (MQ=255) tcgagtcTTTTTCGAAGATGAGCGCGATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCTTa < 1:2460278/71‑1 (MQ=255) cgagtcTTTTTCGAAGATGAGCGCGATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCtt < 1:932425/64‑1 (MQ=255) gagtcTTTTTGGAAGATGAGCGCGATGTTTTTACCGGTAAGCTTCTGTACTTCCTTGCCATTTTTTTTATc > 1:2406720/1‑71 (MQ=255) gagtcTTTTTCGAAGATGAGCGCGATGTTTTTACCGGTAAGATTCTGTACTTCCTTGCCATTTTTTTTATc > 1:1382560/1‑71 (MQ=255) gagtcTTTTTCGAAGATGAGCGCGATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCTTAt < 1:1185952/70‑1 (MQ=255) gagtcTTTTTCGAAGATGAGCGCGATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCTTATc < 1:917204/71‑1 (MQ=255) gtcTTTTTCGAAGATGAGCGCGATGTTTTTACCGGTAAGCTTCTGTACTTCCTTGCCATTTTTTTTATCg > 1:737502/1‑70 (MQ=255) gtcTTTTTCGAAGATGAGCGCGATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCTTATCgg < 1:1258608/71‑1 (MQ=255) tcTTTTTCGAAGATGAGCGCGATGTTTTTACCGGTAAGCTTCTGTACTTCCTTGCCATTTTTTTTATCGGc < 1:3193547/71‑1 (MQ=255) tcTTTTTCGAAGATGAGCGCGATGTTTTTACCAGTGAGTTTGGcttcttc > 1:3147016/1‑50 (MQ=255) tttttCGAAGATGAGCGCGATGTTTTTACCAGTGAGTTTGGcttcttctt < 1:1690350/50‑1 (MQ=255) tttttCGAAGATGAGCGCGATGTTTTTACCAGTGAGTTTGGcttct < 1:2084985/46‑1 (MQ=255) tttttCGAAGATGAGCGCGATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTc > 1:1812235/1‑61 (MQ=255) tttCGAAGATGAGCGCGATGTTTTTACCGGTAAGCTTCTGTACTTCCTTGCCATTTTTTTTATCGGCtt < 1:3306119/69‑1 (MQ=255) tttCGAAGATGAGCGCGATGTTTTTACCGGTAAGCTTCTGTACTTCCTTGCCATTTTTTTTATCGGCtt < 1:2106005/69‑1 (MQ=255) tttCGAAGATGAGCGCGATGTTTTTACCGGTAAGCTTCTGTACTTCCTTGCCATTTTTTTTATCGGCt < 1:260631/68‑1 (MQ=255) tttCGAAGATGAGCGCGATGTTTTTACCGGTAAGCTTCTGTACTTCCTTGCCATTTTTTTTATCGGCt < 1:2574720/68‑1 (MQ=255) tttCGAAGATGAGCGCGATGTTTTTACCGGTAAGCTTCTGTACTTCCTTGCCATTTTTTTTATCGGCt < 1:3732892/68‑1 (MQ=255) tttCGAAGATGAGCGCGATGTTTTTACCAGTGAGTTTGGct < 1:1047821/41‑1 (MQ=255) tttCGAAGATGAGCGCGATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCTTATCGGCttt < 1:1167246/70‑1 (MQ=255) tttCGAAGATGAGCGCGATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCTTATCGGCttt < 1:1762441/70‑1 (MQ=255) ttCGAAGATGAGCGCGATGTTTTTACCGGTAAGCTTCTGTACTTCCTTGCCATTTTTTTTATCGGCtttg < 1:875383/70‑2 (MQ=255) ttCGAAGATGAGCGCGATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCTTATCGGCTTTc < 1:918403/70‑1 (MQ=255) tCGAAGATGAGCGCGATGTTTTTACCAGTGAGTTTGGct < 1:963369/39‑1 (MQ=255) gAAGATGAGCGCGATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCttt < 1:2989852/53‑1 (MQ=255) gAAGATGAGCGCGATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCTTATc > 1:2414015/1‑60 (MQ=255) aGATGAGCGCGATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTa > 1:996348/1‑44 (MQ=255) aGATGAGCGCGATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTa > 1:1467276/1‑44 (MQ=255) gATGAGCGCGATGTTTTTACCAGTGAGTTTGGcttcttc > 1:3382425/1‑39 (MQ=255) gATGAGCGCGATGTTTTTACCAGTGAGTTTGGcttct > 1:3680665/1‑37 (MQ=255) gATGAGCGCGATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTc > 1:3413156/1‑52 (MQ=255) gATGAGCGCGATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCTTATCGGCTTTCAGCTTcg > 1:1783812/1‑71 (MQ=255) gATGAGCGCGATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCTTATCGGCTTTCAGCTTcg < 1:1160/71‑1 (MQ=255) aTGAGCGCGATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCTTATCGGCtt < 1:3525389/61‑1 (MQ=255) aTGAGCGCGATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCTTATCGGCTTTCAGCTTcgc > 1:104555/1‑71 (MQ=255) aTGAGCGCGATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCTTATCGGCTTTCAGCTTcgc < 1:1868592/71‑1 (MQ=255) tGAGCGCGATGTTTTTACCGGTAAGCTTCTGTACTTCCTTGCCATTTTTTTTATCGGc < 1:1810735/58‑1 (MQ=255) tGAGCGCGATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCtttt > 1:3398013/1‑49 (MQ=255) gAGCGCGATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCttt > 1:2509847/1‑47 (MQ=255) gAGCGCGATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCttt > 1:79207/1‑47 (MQ=255) aGCGCGATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCTTATCGGCTTTCAGCTTCGCGGc > 1:89350/1‑71 (MQ=255) gcgcGATGTTTTTACCAGTGTGTTTGGCTTCTTCTTTACCGCTTTTCTTATCGGCTTTCAGCTTCGCGGCt < 1:2880690/71‑1 (MQ=255) gcgcGATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCTTATCGGCTTTCAGCTTCGCGGCt < 1:2324083/71‑1 (MQ=255) gcgcGATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCTTATCGGCTTTCAGCTTCGCGGCt < 1:2816680/71‑1 (MQ=255) cgcgATGTTTTTAGCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCTTATCGGCTTTCAGCTTCGCGGCTa < 1:1296647/71‑1 (MQ=255) cgcgATGTTTTTACCGGTAAGCTTCTGTACTTCCTTGCCATTTTTTTTATCGGCTTTGAGCTGTGCGGcaa < 1:3578651/71‑3 (MQ=255) gcgATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTa < 1:307647/36‑1 (MQ=255) cgATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCTTATCGGCTTTc > 1:726269/1‑56 (MQ=255) aTGTTTTTACCAGTGAGGTTGGCTTCTTCTTTACCGCTTTTCTTATCGGCTTTCAGCTTCGCGGCTa < 1:728554/67‑1 (MQ=255) tGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCTTATCg > 1:194072/1‑47 (MQ=255) tGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCTTATCg > 1:3055440/1‑47 (MQ=255) gTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCTTATCGGCttt > 1:1636867/1‑51 (MQ=255) tttttACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCt < 1:2845223/40‑1 (MQ=255) tttttACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCt < 1:792723/40‑1 (MQ=255) tttttACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCt < 1:451192/40‑1 (MQ=255) tttttACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCTTATCGGCTTTCa < 1:1537903/52‑1 (MQ=255) tttttACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCTTATCGGCTTTCAGCTTCGCGGCTAACTgcag < 1:2830672/71‑1 (MQ=255) tttttACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCTTATCGGCTTTCAGCTTCGCGGCTAACTgca < 1:2776959/70‑1 (MQ=255) tttACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCTTATCGGCTTTCAGCTTCGCGGCTAACTgcag > 1:455139/1‑69 (MQ=255) cAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCTTATCGGCTTTCAGCTTCGCGGCTAACTGCAGCAGGCTg < 1:1053806/71‑1 (MQ=255) gTGAGTTTGGCTTCTTCTTTACCGCTTTTCTTATCGGCTTTCAGCTTCGCGGCTAACTGCAGCAGGCTGtt < 1:857016/71‑1 (MQ=255) gTGAGTTTGGCTTCTTCTTTACCGCTTTTCTTATCGGCTTTCAGCTTCGCGGCTAACTGCAGCAGGCTGtt < 1:2841737/71‑1 (MQ=255) tGAGTTTGGCTTCTTCTTTACCGCTTTTCTTATCGGCTTTCAGCTTCGCGGCTAACTGCAGCAGGCTGtt > 1:1997174/1‑70 (MQ=255) tGAGTTTGGCTTCTTCTTTACCGCTTTTATTATCGGCTTTCAGCTTCGCGGCt > 1:2001694/1‑53 (MQ=255) gAGTTTGGCTTCTTCTTTACCGCTTTTCTTATCGGCTTTCAGCTTCGCGGCTAACTGCAGCAGGCTGtt > 1:3628590/1‑69 (MQ=255) aGTTTGGCTTCTTCTTTACCGCTTTTCTTATCGGCTTTCAGCTTCGCGGCTAACTGCAGCAGGCTGTTg < 1:683609/69‑1 (MQ=255) gTTTGGCTTCTTCTTTACCGCTTTTCTTATCGGCTTTCAGCTTct < 1:111335/45‑2 (MQ=255) cttcttcttTACCGCTTTTCTTATCGGCTTTCAGCTTCGCGGCTAACTGCAGCAGGCTGTTGAGTTc < 1:1127622/67‑1 (MQ=255) | CGAAAGAGCATCGGGTACGAGTCGAGTCTTTTTCGAAGATGAGCGCGATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCTTATCGGCTTTCAGCTTCGCGGCTAACTGCAGCAGGCTGTTGAGTTC > minE/2919506‑2919641 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |