| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,919,589 | C→T | 14.4% | S36N (AGC→AAC) ‡ | argI ← | ornithine carbamoyltransferase 1 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,919,589 | 0 | C | T | 14.4% | 207.9 / 22.7 | 83 | S36N (AGC→AAC) ‡ | argI | ornithine carbamoyltransferase 1 |
| Reads supporting (aligned to +/- strand): ref base C (25/46); new base T (3/9); total (28/55) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.43e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01 | |||||||||||
TACGAGTCGAGTCTTTTTCGAAGATGAGCGCGATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCTTATCGGCTTTCAGCTTCGCGGCTAACTGCAGCAGGCTGTTGAGTTCAGCTGGCGTGAAATCGAG > minE/2919521‑2919659 | tACGAGTCGAGTCTTTTTCGAAGATGAGCGCGATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCtt < 1:2555359/71‑1 (MQ=255)tACGAGTCGAGTCTTTTTCGAAGATGAGCGCGATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCtt < 1:3063819/71‑1 (MQ=255) cgagtcgagtCTTTTTCGAAGATGAGCGCGATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCttt < 1:1964499/70‑1 (MQ=255) cgagtcgagtCTTTTTCGAAGATGAGCGCGATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCttt > 1:1144197/1‑70 (MQ=255) gtcgagtcTTTTTCGAAGATGAGCGCGATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCtt < 1:156901/71‑1 (MQ=255) gtcgagtcTTTTTCGAAGATGAGCGCGATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCtt < 1:458861/71‑1 (MQ=255) gtcgagtcTTTTTCGAAGATGAGCGCGATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCtt < 1:3491272/71‑1 (MQ=255) gtcgagtcTTTTTCGAAGATGAGCCCGATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCt > 1:1430430/1‑70 (MQ=255) tcgagtcTTTTTCGAAGATGAGCGCGATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCTTa < 1:2460278/71‑1 (MQ=255) cgagtcTTTTTCGAAGATGAGCGCGATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCtt < 1:932425/64‑1 (MQ=255) gagtcTTTTTGGAAGATGAGCGCGATGTTTTTACCGGTAAGCTTCTGTACTTCCTTGCCATTTTTTTTATc > 1:2406720/1‑71 (MQ=255) gagtcTTTTTCGAAGATGAGCGCGATGTTTTTACCGGTAAGATTCTGTACTTCCTTGCCATTTTTTTTATc > 1:1382560/1‑71 (MQ=255) gagtcTTTTTCGAAGATGAGCGCGATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCTTAt < 1:1185952/70‑1 (MQ=255) gagtcTTTTTCGAAGATGAGCGCGATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCTTATc < 1:917204/71‑1 (MQ=255) gtcTTTTTCGAAGATGAGCGCGATGTTTTTACCGGTAAGCTTCTGTACTTCCTTGCCATTTTTTTTATCg > 1:737502/1‑70 (MQ=255) gtcTTTTTCGAAGATGAGCGCGATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCTTATCgg < 1:1258608/71‑1 (MQ=255) tcTTTTTCGAAGATGAGCGCGATGTTTTTACCGGTAAGCTTCTGTACTTCCTTGCCATTTTTTTTATCGGc < 1:3193547/71‑1 (MQ=255) tttttCGAAGATGAGCGCGATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTc > 1:1812235/1‑61 (MQ=255) tttCGAAGATGAGCGCGATGTTTTTACCGGTAAGCTTCTGTACTTCCTTGCCATTTTTTTTATCGGCtt < 1:2106005/69‑1 (MQ=255) tttCGAAGATGAGCGCGATGTTTTTACCGGTAAGCTTCTGTACTTCCTTGCCATTTTTTTTATCGGCtt < 1:3306119/69‑1 (MQ=255) tttCGAAGATGAGCGCGATGTTTTTACCGGTAAGCTTCTGTACTTCCTTGCCATTTTTTTTATCGGCt < 1:260631/68‑1 (MQ=255) tttCGAAGATGAGCGCGATGTTTTTACCGGTAAGCTTCTGTACTTCCTTGCCATTTTTTTTATCGGCt < 1:2574720/68‑1 (MQ=255) tttCGAAGATGAGCGCGATGTTTTTACCGGTAAGCTTCTGTACTTCCTTGCCATTTTTTTTATCGGCt < 1:3732892/68‑1 (MQ=255) tttCGAAGATGAGCGCGATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCTTATCGGCttt < 1:1762441/70‑1 (MQ=255) tttCGAAGATGAGCGCGATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCTTATCGGCttt < 1:1167246/70‑1 (MQ=255) ttCGAAGATGAGCGCGATGTTTTTACCGGTAAGCTTCTGTACTTCCTTGCCATTTTTTTTATCGGCtttg < 1:875383/70‑2 (MQ=255) ttCGAAGATGAGCGCGATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCTTATCGGCTTTc < 1:918403/70‑1 (MQ=255) gAAGATGAGCGCGATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCttt < 1:2989852/53‑1 (MQ=255) gAAGATGAGCGCGATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCTTATc > 1:2414015/1‑60 (MQ=255) gATGAGCGCGATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTc > 1:3413156/1‑52 (MQ=255) gATGAGCGCGATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCTTATCGGCTTTCAGCTTcg > 1:1783812/1‑71 (MQ=255) gATGAGCGCGATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCTTATCGGCTTTCAGCTTcg < 1:1160/71‑1 (MQ=255) aTGAGCGCGATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCTTATCGGCtt < 1:3525389/61‑1 (MQ=255) aTGAGCGCGATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCTTATCGGCTTTCAGCTTcgc < 1:1868592/71‑1 (MQ=255) aTGAGCGCGATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCTTATCGGCTTTCAGCTTcgc > 1:104555/1‑71 (MQ=255) tGAGCGCGATGTTTTTACCGGTAAGCTTCTGTACTTCCTTGCCATTTTTTTTATCGGc < 1:1810735/58‑1 (MQ=255) tGAGCGCGATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCtttt > 1:3398013/1‑49 (MQ=255) gAGCGCGATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCttt > 1:79207/1‑47 (MQ=255) gAGCGCGATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCttt > 1:2509847/1‑47 (MQ=255) aGCGCGATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCTTATCGGCTTTCAGCTTCGCGGc > 1:89350/1‑71 (MQ=255) gcgcGATGTTTTTACCAGTGTGTTTGGCTTCTTCTTTACCGCTTTTCTTATCGGCTTTCAGCTTCGCGGCt < 1:2880690/71‑1 (MQ=255) gcgcGATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCTTATCGGCTTTCAGCTTCGCGGCt < 1:2816680/71‑1 (MQ=255) gcgcGATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCTTATCGGCTTTCAGCTTCGCGGCt < 1:2324083/71‑1 (MQ=255) cgcgATGTTTTTAGCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCTTATCGGCTTTCAGCTTCGCGGCTa < 1:1296647/71‑1 (MQ=255) cgcgATGTTTTTACCGGTAAGCTTCTGTACTTCCTTGCCATTTTTTTTATCGGCTTTGAGCTGTGCGGcaa < 1:3578651/71‑3 (MQ=255) cgATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCTTATCGGCTTTc > 1:726269/1‑56 (MQ=255) aTGTTTTTACCAGTGAGGTTGGCTTCTTCTTTACCGCTTTTCTTATCGGCTTTCAGCTTCGCGGCTa < 1:728554/67‑1 (MQ=255) tGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCTTATCg > 1:3055440/1‑47 (MQ=255) tGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCTTATCg > 1:194072/1‑47 (MQ=255) gTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCTTATCGGCttt > 1:1636867/1‑51 (MQ=255) tttttACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCt < 1:2845223/40‑1 (MQ=255) tttttACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCt < 1:792723/40‑1 (MQ=255) tttttACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCt < 1:451192/40‑1 (MQ=255) tttttACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCTTATCGGCTTTCa < 1:1537903/52‑1 (MQ=255) tttttACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCTTATCGGCTTTCAGCTTCGCGGCTAACTgcag < 1:2830672/71‑1 (MQ=255) tttttACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCTTATCGGCTTTCAGCTTCGCGGCTAACTgca < 1:2776959/70‑1 (MQ=255) tttACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCTTATCGGCTTTCAGCTTCGCGGCTAACTgcag > 1:455139/1‑69 (MQ=255) cAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCTTATCGGCTTTCAGCTTCGCGGCTAACTGCAGCAGGCTg < 1:1053806/71‑1 (MQ=255) gTGAGTTTGGCTTCTTCTTTACCGCTTTTCTTATCGGCTTTCAGCTTCGCGGCTAACTGCAGCAGGCTGtt < 1:2841737/71‑1 (MQ=255) gTGAGTTTGGCTTCTTCTTTACCGCTTTTCTTATCGGCTTTCAGCTTCGCGGCTAACTGCAGCAGGCTGtt < 1:857016/71‑1 (MQ=255) tGAGTTTGGCTTCTTCTTTACCGCTTTTCTTATCGGCTTTCAGCTTCGCGGCTAACTGCAGCAGGCTGtt > 1:1997174/1‑70 (MQ=255) tGAGTTTGGCTTCTTCTTTACCGCTTTTATTATCGGCTTTCAGCTTCGCGGCt > 1:2001694/1‑53 (MQ=255) gAGTTTGGCTTCTTCTTTACCGCTTTTCTTATCGGCTTTCAGCTTCGCGGCTAACTGCAGCAGGCTGtt > 1:3628590/1‑69 (MQ=255) aGTTTGGCTTCTTCTTTACCGCTTTTCTTATCGGCTTTCAGCTTCGCGGCTAACTGCAGCAGGCTGTTg < 1:683609/69‑1 (MQ=255) gTTTGGCTTCTTCTTTACCGCTTTTCTTATCGGCTTTCAGCTTct < 1:111335/45‑2 (MQ=255) cttcttcttTACCGCTTTTCTTATCGGCTTTCAGCTTCGCGGCTAACTGCAGCAGGCTGTTGAGTTc < 1:1127622/67‑1 (MQ=255) ttcttcttTACCGCTTTTCTTATCGGCTTTCAGCTTCGCGGCt < 1:429318/43‑1 (MQ=255) ttcttcttTACCGCTTTTCTTATCGGCTTTCAGCTTCGCGGCTAACTgcagc < 1:2887964/52‑1 (MQ=255) ttcttcttTACCGCTTTTCTTATCGGCTTTCAGCTTCGCGGCTAACTGCAGCAGGCTGt < 1:1969946/59‑1 (MQ=255) tcttcttTACCGCTTTTCTTATCGGCTTTCAGCTTCGCGGCTAACTGCAGCAGGCTGtt > 1:327109/1‑59 (MQ=255) cttcttTACCGCTTTTCTTATCGGCTTTCAGCTTCGCGGCTAACTGCAGCAGGCTGTTGAGTTCAGCTg < 1:1344883/69‑1 (MQ=255) cttcttTACCGCTTTTCTTATCGGCTTTCAGCTTCGCGGCTAACTGCAGCAGGCTGTTGAGTTCAGCTGGc > 1:3092359/1‑71 (MQ=255) cttcttTACCGCTTTTCTTATCGGCTTTCAGCTTCGCGGCTAACTGCAGCAGGCTCTTGAGTTCAGCTgg < 1:3197157/70‑1 (MQ=255) cttcttTACCGCTTTTCTTATCGGCTTTCAACTTCGCGGCTaa > 1:3609696/1‑43 (MQ=255) tttACCGCTTTTCTTATCGGCTTTCAGCTTCGCGGCTAACTGcagcag < 1:1546572/48‑1 (MQ=255) tACCGCTTTTCTTATCGGCTTTCAGCTTCGCGGCTAACTGCAGCAGGCTGTTGAGTTCAGCTGGCGTGaaa > 1:2900650/1‑71 (MQ=255) tACCGCTTTTCTTATCGGCTTTCAGCTTCGCGGCTAACTGCAGCAGGCTGTTGAGTTCAGCTGGCGTGaaa > 1:3251835/1‑71 (MQ=255) tACCGCTTTTCTTATCGGCTTTCAGCTTCGCGGCTAACTGCAGCAGGCTGTTGAGTTCAGCTGGCGTGaa < 1:2746118/70‑1 (MQ=255) aCCGCTTTTCTTATCGGCTTTCAGCTTCGCGGCTAACTGCAGCAGGCTGTTGAGTTCAGCTGGCGTGaaa < 1:391322/70‑1 (MQ=255) ccGCTTTTCTTATCGGCTTTCAGCTTCGCGGCTAACTGCAGCAGGCTGTTGAGTTCAGCTGGCGTGAAATc < 1:840109/71‑1 (MQ=255) ccGCTTTTCTTATCGGCTTTCAGCTTCGCGGCTAACTGCAGCAGGCTGTTGAGTTCAGCTGGCGTGAAATc > 1:120022/1‑71 (MQ=255) ccGCTTTTCTTATCGGCTTTCAGCTTCGCGGCTAACTGCAGCAGGCTGTTGAGTTCAGCTGGCGTGAAATc < 1:211394/71‑1 (MQ=255) gCTTTTCTTATCGGCTTTCAGCTTCGCGGCTAACTGCAGCAGGCTGTTGAg < 1:2384591/51‑1 (MQ=255) cTTTTCTTATCGGCTTTCAGCTTCGCGGCTAACTGCAGCAGGCTGTTGAGTTCAGCTGGCGTGAAATCGAg < 1:714676/71‑1 (MQ=255) cTTTTCTTATCGGCTTTCAGCTTCGCGGCTAACTGCAGCAGGCTGTTGAGTTCAGCTGGCGTGAAATCGAg > 1:243207/1‑71 (MQ=255) | TACGAGTCGAGTCTTTTTCGAAGATGAGCGCGATGTTTTTACCAGTGAGTTTGGCTTCTTCTTTACCGCTTTTCTTATCGGCTTTCAGCTTCGCGGCTAACTGCAGCAGGCTGTTGAGTTCAGCTGGCGTGAAATCGAG > minE/2919521‑2919659 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |