Predicted mutation
evidence seq id position mutation freq annotation gene description
RA minE 385,963 T→C 10.0% F391F (TTT→TTC cstA → carbon starvation protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*minE385,9630TC10.0% 163.4 / 8.1 60F391F (TTT→TTCcstAcarbon starvation protein
Reads supporting (aligned to +/- strand):  ref base T (24/30);  new base C (4/2);  total (28/32)
Fisher's exact test for biased strand distribution p-value = 4.04e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01

TGTTAATGGAATCCTTCGTGGCGATTATGGCGCTGGTTTCCGCCTGTATCATCGATCCGGGCGTGTATTTTGCCATGAACAGCCCGATGGCGGTGCTGGCTCCGGCAGGGACGGCGGATGTGGTCGCTTCTGCCGCGC  >  minE/385893‑386030
                                                                      |                                                                   
tGTTAATGGAATCCTTCGTGGCGATTATGGCGCTGGTTTCCGCCTGTATCATCGATCCGGGCGTGTAtttt                                                                     <  1:3409863/71‑1 (MQ=255)
    aaTGGAATCCTTCGTGGCGATTATGGCGCTGGTTTCCGCCTGTATCATCGATCCGGGCGTGTATTTTGcc                                                                  >  1:406668/1‑70 (MQ=255)
     aTGGAATCCTTCGTGGCGATTATGGCGCTGGTTTCCGCCTGTATCATCGATCCGGGCGTGTATTTTGCCAt                                                                >  1:2331529/1‑71 (MQ=255)
      tGGAATCCTTCGTGGCGATTATGGCGCTGGTTTCCGCCTGTATCATCGATCCGGGCGTGTATTTTGCCATg                                                               <  1:3649642/71‑1 (MQ=255)
      tGGAATCCTTCGTGGCGATTATGGCGCTGGTTTCCGCCTGTATCATCGATCCGGGCGTGTATTTTGCCATg                                                               <  1:1408146/71‑1 (MQ=255)
          gtCCTTCGTGGCGATTATGGCGCTGGTTGCTGCGTCCATCATCGAACCGGGTCTTTACTTCGCGATGAACa                                                           <  1:2450192/70‑1 (MQ=255)
          aTCCTTCGTGGCGATTATGGCGCTGGTTTCCGCCTGTATCATCGATCCGGGCGTGTATTTTGCCATg                                                               >  1:1329927/1‑67 (MQ=255)
          aTCCTTCGTGGCGATTATGGCGCTGGTTTCCGCCTGTATCATCGATCCGGGCGTGTATTTTGCCATGa                                                              >  1:1494920/1‑68 (MQ=255)
          aTCCTTCGTGGCGATTATGGCGCTGGTTTCCGCCTGTATCATCGATCCGGGCGTGTATTTTGCCATGAACa                                                           <  1:2018197/71‑1 (MQ=255)
           tCCTTCGTGGCGATTATGGCGCTGGTTTCCGCCTGTATCATCGATCCGGGCGTGTATTTTg                                                                    <  1:2107254/61‑1 (MQ=255)
             cTTCGTGGCGATTATGGCGCTGGTTTCCGCCTGTATCATCGATCCGGGCGTGTATTTTGCCATGAACAGcc                                                        <  1:1425091/71‑1 (MQ=255)
             cTTCGTGGCGATTATGGCGCTGGTTGCTGCGTCCATCATCGAACCGGGTCTTTACTTCGCGATGAACac                                                          >  1:2351686/1‑68 (MQ=255)
               tCGTGGCGATTATGGCGCTGGTTTCCGCCTGTATCATCGATCCGGGCGTGTATTTTGCCATGAACAGccc                                                       >  1:1677542/1‑70 (MQ=255)
                cGTGGCGATTATGGCGCTGGTTTCCGCCTGTATCATCGATCCGGGCGTGTATTTTGCCATGAACAGccc                                                       <  1:3012109/69‑1 (MQ=255)
                cGTGGCGATTATGGCGCTGGTTGCTGCGTCCATCATCGAACCGGGTCTTTACTTCGCGATGAACACCCCgc                                                     >  1:3528104/1‑70 (MQ=255)
                 gTGGCGATTATGGCGCTGGTTTCCGCCTGTATCATCGATCCGGGCGTGTATTTTGCCATg                                                               <  1:3506746/60‑1 (MQ=255)
                        ttATGGCGCTGGTTTCCGCCTGTATCATCGATCCGGGCGTGTATTTTGCCATGAACAGCCCGATGGCGGt                                              >  1:3021694/1‑70 (MQ=255)
                        ttATGGCGCTGGTTTCCGCCTGTATCATCGATCCGGGCGTGTATTTTGCCATGAACAGCCCGATGGCGGt                                              >  1:2256305/1‑70 (MQ=255)
                        ttATGGCGCTGGTTTCCGCCTGTATCATCGATCCGGGCGTGTATTTTGCCATGAACAGCCCGATGGCGGTg                                             <  1:14396/71‑1 (MQ=255)
                        ttATGGCGCTGGTTGCTGCGTCCATCATCGAACCGGGTCTTTACTTCGCGATGaa                                                             >  1:3722328/1‑55 (MQ=255)
                        ttATGGCGCTGGTTGCTGCGTCCATCATCGAACCGGGTCTTTACTTCGCGATGaa                                                             >  1:1355696/1‑55 (MQ=255)
                         tATGGCGCTGGTTGCTGCGTCCATCATCGAACCGGGTCTTTACTTCGCGATGAAc                                                            <  1:2112680/55‑1 (MQ=255)
                          aTGGCGCTGGTTTCCGCCTGTATCATCGATCCGGGCGTGTATTTTGCCATGa                                                              <  1:1431758/52‑1 (MQ=255)
                           tGGCGCTGGTTTCCGCCTGTATCATCGATCCGGGCGTGTATTTTGCCATGAACAGCCCGATGGCGGt                                              <  1:2764697/67‑1 (MQ=255)
                              cgcTGGTTTCCGCCTGTATCATCGATCCGGGCGTGTATTTTGCCATGAGCAGCCCGATGGCGGTGCTGGCt                                       <  1:724819/71‑1 (MQ=255)
                              cgcTGGTTTCCGCCTGTATCATCGATCCGGGCGTGTATTTTGCCATGAACAGCCCGATGGCGGTGCTGGCt                                       <  1:449226/71‑1 (MQ=255)
                               gcTGGTTTCCGCCTGTATCATCGATCCGGGCGTGTATTTTGCCATGAACAGCCCGATGGCGGTGCTGGCTc                                      >  1:1405036/1‑71 (MQ=255)
                                cTGGTTTCCGCCTGTATCATCGATCCGGGCGTGTATTTTGCCATg                                                               <  1:110534/45‑1 (MQ=255)
                                cTGGTTTCCGCCTGTATCATCGATCCGGGCGTGTATTTTGCCAAGAACAGcc                                                        >  1:2128327/1‑52 (MQ=255)
                                   gTTTCCGCCTGTATCATCGATCCGGGCGTGTATTTTGCCATGAACAGCCCGATGGCGGTGCTGGCTCCgg                                   <  1:3141410/70‑1 (MQ=255)
                                      tCCGCCTGTATCATCGATCCGGGCGTGTATTTTGcc                                                                  >  1:1259441/1‑36 (MQ=255)
                                       ccGCCTGTATCATCGATCCGGGCGTGTATTTTGcc                                                                  >  1:375767/1‑35 (MQ=255)
                                       ccGCCTGTATCATCGATCCGGGCGTGTATTTTGCCATGAACAGCCCGATGGCGGTGCTGGCTCCGGCAgg                               >  1:2988646/1‑70 (MQ=255)
                                        cGCCTGTATCATCGATCCGGGCGTGTATTTTGCCATGAACAGCCCGATGGCGGTGCTGGCTCCGGCAggg                              <  1:1597973/70‑1 (MQ=255)
                                        cGCCTGTATCATCGATCCGGGCGTGTATTTTGCCATGAACAGCCCGATGGCGGTGCTGGCTCCGGCAGGGa                             >  1:254284/1‑71 (MQ=255)
                                        cGCCTGTATCATCGATCCGGGCGTGTATTTTGCCATGAACAGCCCGATGGCGGTGCTGGCTCCGGCAGGGa                             >  1:3278000/1‑71 (MQ=255)
                                          ccTGTATCATCGATCCGGGCGTGTATTTTGCCATGAACAGCCCGATGGCGGTGCTGGCTCCGGCAGGGAcg                           <  1:285236/71‑1 (MQ=255)
                                             gTATCATCGATCCGGGCGTGTATTTTGCCATGAACAGCCCGATGGCGGTGCTGGCTCCGGCAGGGAcggcg                        >  1:3698815/1‑71 (MQ=255)
                                              tATCATCGATCCGGGCGTGTATTTTGCCATGAACAGCCCGATGGCGGTGCTGGc                                        <  1:2039867/54‑1 (MQ=255)
                                              tATCATCGATCCGGGCGTGTATTTTGCCATGAACAGCCCGATGGCGGTGCTGGc                                        <  1:1562283/54‑1 (MQ=255)
                                              tATCATCGATCCGGGCGTGTATTTTGCCATGAACAGCCCGATGGCGGTGCTGGCTCCGGCAGGGAcggcg                        <  1:2980094/70‑1 (MQ=255)
                                                 catcGATCCGTGCGTGTATTTTGCCATGAACAGCCCGATGGCGGTGCTGGCTCCGGCAGGGACGGCGGAtg                    >  1:2472677/1‑71 (MQ=255)
                                                  atcGATCCGGGCGTGTATTTTGCCATGAACAGCCCGATGGCGGTGCTGGCTCCgg                                   >  1:2122624/1‑55 (MQ=255)
                                                    cGATCCGGGCGTGTATTTTGCCATGAACAGCCCGATGGCGGTGCTGGCTCCGGCAGGGACGGCGGATGTgg                 >  1:3672266/1‑71 (MQ=255)
                                                    cGATCCGGGCGTGTATTTTGCCATGAACAGCCCGATGGCGGTGCTGGCTCCGGCAGGGACGGCGGATGTgg                 >  1:1207560/1‑71 (MQ=255)
                                                     gATCCGGGCGTGTATTTTGCCATGAACAGCCCGATGGCGGTGCTGGCTCCGGc                                  >  1:2911890/1‑53 (MQ=255)
                                                     gATCCGGGCGTGTATTTTGCCATGAACAGCCCGATGGCGGTGCTGGCTCCGGCa                                 >  1:547902/1‑54 (MQ=255)
                                                     gATCCGGGCGTGTATTTTGCCATGAACAGCCCGATGGCGGTGCTGGCTCCGGCAGGGACGGCGGATGTgg                 <  1:3684144/70‑1 (MQ=255)
                                                       tCCGGGCGTGTATTTTGCCATGAACAGCCCGATGGCGGTGCTGGCTCCGGCAGGGACGGCGGATGTGGt                <  1:3016322/69‑1 (MQ=255)
                                                         cGGGCGTGTATTTTGCCATGAACAGCCCGATGGCGGTGCTGGCTCCGGCAGGGACGGCGGATGTGGTCGCt            <  1:3695775/71‑1 (MQ=255)
                                                          gggCGTGTATTTTGCCGTGAACAGCCCGATGGCGGTGCTGGCTCCGGCAGGGACGGCGGATGTGGTCGCtt           <  1:310825/71‑1 (MQ=255)
                                                          gggCGTGTATTTTGCCATGAACAGCCCGATGGCGGTGCTGGCTCCGGCAGGGACGGCGGATGTGGTCGCtt           <  1:635560/71‑1 (MQ=255)
                                                             cGTGTATTTTGCCATGAACAGCCCGATGGCGGTGCTGGCTCCGGCAGGGACGGCGGa                      <  1:793820/57‑1 (MQ=255)
                                                             cGTGTATTTTGCCATGAACAGCCCGATGGCGGTGCTGGCTCCGGCAGGGACGGCGGATGTGGTCGCTTCTg        <  1:3750849/71‑1 (MQ=255)
                                                             cGTGTATTTTGCCATGAACAGCCCGATGGCGGTGCTGGCTCCGGCAGGGACGGCGGATGTGGTCGCTTCTg        <  1:833616/71‑1 (MQ=255)
                                                              gtgtATTTTGCCATGAACAGCCCGATGGCGGTGCTGGCTCCGGCAGGGACGGCGGATGTGGTCGCTTCTg        <  1:3702515/70‑1 (MQ=255)
                                                                 tATTTTGCCATGAACAGCCCGATGGCGGTGCTGGCTCCGGCAGGGACGGCGGa                      >  1:1773127/1‑53 (MQ=255)
                                                                 tATTTTGCCATGAACAGCCCGATGGCGGTGCTGGCTCCGGCAGGGACGGCGGATGTGGTCGCTTCTGCcg     >  1:2694424/1‑70 (MQ=255)
                                                                 tATTTTGCCATGAACAGACCGATGGCGTTGCTGGCTCCGGCAGGGACGGCGGATGTGGTCGCTTCTGCcgc    >  1:3099740/1‑71 (MQ=255)
                                                                  aTTTTGCCATGAACAGCCCGATGGCGGTGCTGGCTCCGGCAGGGACGGCGGATGTGGt                <  1:3126743/58‑1 (MQ=255)
                                                                  aTTTTGCCATGAACAGCCCGATGGCGGTGCTGGCTCCGGCAGGGACGGCGGATGTGGTCGCTTCTGCcgc    <  1:3277909/70‑1 (MQ=255)
                                                                   ttttGCCATGAACAGCCCGATGGCGGTGCTGGCTCCGGCAGGGACGGCGGATGTGGTCGCTTCTGCcgcg   >  1:2200650/1‑70 (MQ=255)
                                                                   ttttGCCATGAACAGCCCGATGGCGGTGCTGGCTCCGGCAGGGACGGCGGATGTGGTCGCTTCTGCCgcgc  <  1:2028226/71‑1 (MQ=255)
                                                                    tttGCCATGAACAGCCCGATGGCGGTGCTGGCTCCGGCAGGGACGGCGGATGTTGTCGCTTATGCcgcg   >  1:3863631/1‑69 (MQ=255)
                                                                    tttGCCATGAACAGCCCGATGGCGGTGCTGGCTCCGGCAGGGACGGCGGATGTGGTCGCTTCTGCcgcg   >  1:2864977/1‑69 (MQ=255)
                                                                     ttGCCATGAACAGCCCGATGGCGGTGCTGGCTCCGGCAGGGACGGCGGAtgtg                  >  1:2577348/1‑53 (MQ=255)
                                                                      |                                                                   
TGTTAATGGAATCCTTCGTGGCGATTATGGCGCTGGTTTCCGCCTGTATCATCGATCCGGGCGTGTATTTTGCCATGAACAGCCCGATGGCGGTGCTGGCTCCGGCAGGGACGGCGGATGTGGTCGCTTCTGCCGCGC  >  minE/385893‑386030

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: