| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 412,564 | A→C | 41.1% | intergenic (‑209/+80) | leuS ← / ← lnt | leucyl‑tRNA synthetase/apolipoprotein N‑acyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 412,564 | 0 | A | C | 41.1% | ‑0.5 / 49.5 | 39 | intergenic (‑209/+80) | leuS/lnt | leucyl‑tRNA synthetase/apolipoprotein N‑acyltransferase |
| Reads supporting (aligned to +/- strand): ref base A (10/13); new base C (7/9); total (17/22) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.65e-01 | |||||||||||
TACATTAATTTACAGAGTTTGTGGGCGTATTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTAAGTTAACGACCCGGGAGATGAAACGGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCAC > minE/412496‑412631 | tACATTAATTTACAGAGTTTGTGGGCGTATTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTCAg < 1:2121686/71‑1 (MQ=255)tACATTAATTTACAGAGTTTGTGGGCGTATTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTCAg < 1:59915/71‑1 (MQ=255) cATTAATTTACAGAGTTTGTGGGCGTATTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTCAGtt < 1:1297888/71‑1 (MQ=255) cATTAATTTACAGAGTTTGTGGGCGTATTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTCAGtt < 1:1648033/71‑1 (MQ=255) aTTAATTTACAGAGTTTGTGGGCGTATTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTAAGTTa < 1:1559964/71‑1 (MQ=255) aaTTTACAGAGTTTGTGGGCGTATTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTAAGTTAAc > 1:2042025/1‑70 (MQ=255) tttACAGAGTTTGTGGGCGTATTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTCAGTTAACGAc < 1:1926830/71‑1 (MQ=255) tACAGAGTTTGTGGGCGTATTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTCAGTTAACGAcc < 1:1116043/70‑1 (MQ=255) tACAGAGTTTGTGGGCGTATTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTAAGTTAACGAccc > 1:3683701/1‑71 (MQ=255) cAGAGTTTGTGGGCGTATTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTAAGTTAACGACCCg < 1:1129852/70‑1 (MQ=255) agagTTTGTGGGCGTATTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTCAGtt > 1:1049356/1‑60 (MQ=255) agagTTTGTGGGCGTATTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTCAGTTAACGAc < 1:1500717/66‑1 (MQ=255) agagTTTGTGGGCGTATTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTCAGTTAACGACCCgg > 1:3031692/1‑70 (MQ=255) agTTTGTGGGCGTATTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTCAGTTAACGACCCgg > 1:2257325/1‑68 (MQ=255) gTTTGTGGGCGTATTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTAAGTTAACGACCCgg > 1:516471/1‑67 (MQ=255) tgtgGGCGTATTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTCAGTTAACGACCCGGGAGATg > 1:682087/1‑70 (MQ=255) cGTATTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTCAGTTAACGACCCGGGAGATGAAACga > 1:2365952/1‑69 (MQ=255) cGTATTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTAAGTTAACGACCCgg < 1:923621/58‑1 (MQ=255) gTATTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTCAGTTAACGACCCGGGAGATGAAACgat > 1:854334/1‑68 (MQ=255) tATTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTCAGTTaa < 1:2551560/48‑1 (MQ=255) tATTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTCAGTTAACGACCCGGGAGATGAAACgatg > 1:309852/1‑67 (MQ=255) aTTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTAAGTTaa > 1:1498896/1‑47 (MQ=255) aTTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTAAGTTaa > 1:3300776/1‑47 (MQ=255) ttAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTAAGtt < 1:1682568/44‑1 (MQ=255) agcaaagcaaGGAACAAAGAACGTCTATTATTATAGTAAGTTaa > 1:2053636/1‑44 (MQ=255) gcaaagcaaGGAACAAAGAACGTCTATTATTATAGTAAGtt < 1:1210406/41‑1 (MQ=255) aaagcaaGGAACAAAGAACGTCTATTATTATAGTAAGTTAACGACCCGGGAGATGAAACGGCATCCGGt > 1:2434753/1‑69 (MQ=255) agcaaGGAACAAAGAACGTCTATTATTATAGTAAGTTAACGACCCGGGAGATGAAACGGCATCCGGTGAGc < 1:3169370/71‑1 (MQ=255) gAACAAAGAACGTCTATTATTATAGTAAGTTAACGACCCGGGAGATGAAACGGCATCCGGTGa < 1:2689536/63‑1 (MQ=255) cAAAGAACGTCTATTATTATAGTAAGTTAACGACCCGCGAGATGAAACGGCATCCGGTGAGCGTGCCGaaa < 1:3426331/71‑1 (MQ=255) tCTATTATTATAGTCAGTTAACGACCCGGGAGATGAAAc < 1:1500354/39‑1 (MQ=255) tCTATTATTATAGTAAGTTAACGACCCGGGAGATGAAAc < 1:1721425/39‑1 (MQ=255) tCTATTATTATAGTAAGTTAACGACCCGGGAGATGAAACGGCATCCGGTGAGCGTGCCGAAATATGGGATg < 1:393686/71‑1 (MQ=255) cTATTATTATAGTAAGTTAACGACCCGGGAGATGAAACGGCATCCGGTGAGCGTGCCGAAATATGGGATg > 1:2281166/1‑70 (MQ=255) cTATTATTATAGTAAGTTAACGACCCGGGAGATGAAACGGCATCCGGTGAGCGTGCCGAAATATGGGATg > 1:3618396/1‑70 (MQ=255) ataGTAAGTTAACGACCCGGGAGATGAAACGGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCgg < 1:2297796/70‑1 (MQ=255) ataGTAAGTTAACGACCCGGGAGATGAAACGGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCgg < 1:30054/70‑1 (MQ=255) taGTAAGTTAACGACCCGGGAGATGAAACGGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGc < 1:820353/70‑1 (MQ=255) gTAAGTTAACGACCCGGGAGATGAAACGGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCAc > 1:1089075/1‑70 (MQ=255) | TACATTAATTTACAGAGTTTGTGGGCGTATTAGCAAAGCAAGGAACAAAGAACGTCTATTATTATAGTAAGTTAACGACCCGGGAGATGAAACGGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCAC > minE/412496‑412631 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |