| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 805,245 | T→C | 9.7% | intergenic (+46/+54) | dhaR → / ← ycgV | predicted DNA‑binding transcriptional regulator, dihydroxyacetone/predicted adhesin |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 805,245 | 0 | T | C | 9.7% | 109.5 / 3.7 | 41 | intergenic (+46/+54) | dhaR/ycgV | predicted DNA‑binding transcriptional regulator, dihydroxyacetone/predicted adhesin |
| Reads supporting (aligned to +/- strand): ref base T (16/21); new base C (2/2); total (18/23) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.54e-01 | |||||||||||
GGCAGTTTAAGCGCCGGGTATGAAAGACAGAAACGATTTCTGATACATCAGAGTGATCTGTATTTCATTCCGGCGCACGCTAACAATTTTCAGCATCGTTTAAGGGCTTGTCTATCCCGCACTTAAAAGCTGAAGCG > minE/805177‑805313 | ggCAGTTTAAGCGCCGGGTATGAAAGACAGAAACGATTTCTGATACATCAGAGTGATCTGTATTTCATTcc < 1:1547581/71‑1 (MQ=255)ggCAGTTTAAGCGCCGGGTATGAAAGACAGAAACGATTTCTGATACATCAGAGTGATCTGTATTTCATTc < 1:2847842/70‑1 (MQ=255) aGTTTAAGCGCCGGGTATGAAAGACAGAAACGATTTCTGATACATCAGAGTGATCTGTATTTCATTc > 1:311036/1‑67 (MQ=255) aGTTTAAGCGCCGGGTATGAAAGACAGAAACGATTTCTGATACATCAGAGTGATCTGTATTTCATTCCGgc > 1:2478593/1‑71 (MQ=255) aGCGCCGGGTATGAAAGACAGAAACGATTTCTGATACATCAGAGTGATCTGTATTTCATTCCgg > 1:2079058/1‑64 (MQ=255) gcgcCGGGTATGAAAGACAGAAACGATTTCTGATACATCAGAGTGATCTGTATTTCATTCCGGCGCACGCt < 1:2718482/71‑1 (MQ=255) ccGGGTATGAAAGACAGAAACGATTTCTGATACATCAGAGTGATCTGTATTTCAtt > 1:3414283/1‑56 (MQ=255) ccGGGTATGAAAGACAGAAACGATTTCTGATACATCAGAGTGATCTGTATTTCATTCCGGCGCACGCTaa > 1:1186053/1‑70 (MQ=255) cGGGTATGAAAGACAGAAACGATTTCTGATACATCAGAGTGATCTGTATTTCATTCCg < 1:920204/58‑1 (MQ=255) ggTATGAAAGACAGAAACGATTTCTGATACATCAGAGTGATCTGTATTTCATTCCGGCGCACGCTAACAAt > 1:2592746/1‑71 (MQ=255) tATGAAAGACAGAAACGATTTCTGATACATCAGAGTGATCTGTATTTCATTCCGGCGCACGCTAACAAttt < 1:1216201/71‑1 (MQ=255) tGAAAGACAGAAACGATTTCTGATACATCAGAGTGATCTGTATTTCATTCCGGCGCACGCTAACAAtttt < 1:3679231/70‑1 (MQ=255) aGACAGAAACGATTTCTGATACATCAGAGTGATCTGTATTTCATTCCGGCGCACGc > 1:785004/1‑56 (MQ=255) aGACAGAAACGATTTCTGATACATCAGAGTGATCTGTATTTCATTCCGGCGCACGCTAACAATTTTCAGCa > 1:2723250/1‑71 (MQ=255) gACAGAAACGATTTCTGATACATCAGAGTGATCTGTATTTCATTCCGGCGCACGCTAACAATTTTCAGCAt < 1:1624523/71‑1 (MQ=255) cAGAAACGATTTCTGATACATCAGAGTGATCTGTATTTCATTCCGGCGCACGCTAACAATTTTCAGCATCg > 1:3553938/1‑71 (MQ=255) cAGAAACGATTTCTGATACATCAGAGTGATCTGTATTTCATCCCGGCGCACGCTAACAAt > 1:2249574/1‑60 (MQ=255) aGAAACGATTTCTGATACATCAGAGTGATCTGTATTTCATTCCGGCGCACGCTAACAATTTTc < 1:2685844/63‑1 (MQ=255) gAAACGATTTCTGATACATCAGAGTGATCTGTATTTCATCCCGGCGCACGCTAACAATTTTCAGCATCGtt < 1:519317/71‑1 (MQ=255) aaaCGATTTCTGATACATCAGAGTGATCTGTATTTCATCCCGGCGCACGCTAACaa > 1:1848209/1‑56 (MQ=255) aaaCGAATTCTGATACATCAGAGTGATCTGTATTTCATTCCGGCGCACGCTAACAATTTTCAg > 1:513614/1‑63 (MQ=255) aaCGATTTCTGATACATCAGAGTGATCTGTATTTCATTCCGGCGCACGCTAACAATTTTCAGCATCGTTTa < 1:3860467/71‑1 (MQ=255) cGATTTCTGATACATCAGAGTGATCTGTATTTCATTCCGGCGCACGCTAACAATTTTCAGCATCGTTTaa < 1:1544203/70‑1 (MQ=255) cGATTTCTGATACATCAGAGTGATCTGTATTTCATTCCGGCGCACGCTAACAATTTTCAGCATCGTTTAAg < 1:2182893/71‑1 (MQ=255) cGATTTCTGATACATCAGAGTGATCTGTATTTCATTCCGGCGCACGCTAACAATTTTCAGCATCGTTTAAg < 1:3423165/71‑1 (MQ=255) cGATTTCTGATACATCAGAGTGATCTGTATTTCATCCCGGCGCACGCTAACAATTTTCAGCATCGttt < 1:2438540/68‑1 (MQ=255) ttCTGATACATCAGAGTGATCTGTATTTCATTCCGGCGCACGCTAACAATTTTCAGCATCGTTTAAGGGCt > 1:1106355/1‑71 (MQ=255) gATACATCAGAGTGATCTGTATTTCATTCCGGCGCACGCTAACAATTTTCAGCATCGTTTAAGGGCTTGTc > 1:1218459/1‑71 (MQ=255) tACATCAGAGTGATCTGTATTTCATTCCGGCGCACGCTAACaa < 1:400324/43‑1 (MQ=255) cATCAGAGTGATCTGTATTTCATTCCGGCGCACGCTAACAATTTTCAGc > 1:1700533/1‑49 (MQ=255) aTCAGAGTGATCTGTATTTCATTCCGGCGCACGCTAACAATTTTCAGCATCGTTTAAGGGCTTGTCTATcc < 1:1815287/71‑1 (MQ=255) tCAGAGTGATCTGTATTTCATTCCGGCGCACGCTAACAATTTTCAGc < 1:3248879/47‑1 (MQ=255) gagTGATCTGTATTTCATTCCGGCGCACGCTAACaa > 1:2744192/1‑36 (MQ=255) agTGATCTGTATTTCATTCCGGCGCACGCTAACAATTTTCAGCATCGTTTAAGGGCTTGTCTATCCCGCAc < 1:3821612/71‑1 (MQ=255) cTGTATTTCATTCCGGCGCACGCTAACAATTTTCAGCATCGTTTaa > 1:1561847/1‑46 (MQ=255) cTGTATTTCATTCCGGCGCACGCTAACAATTTTCAGCATCGTTTaa > 1:292027/1‑46 (MQ=255) tATTTCATTCCGGCGCACGCTAACAATTTTCAGCATCGTTTAAGGGCTTGTCTATCCCGCACTTaa < 1:1732625/66‑1 (MQ=255) tATTTCATTCCGGCGCACGCTAACAATTTTCAGCATCATTTAAGGGCTTGTCTATCCCGCACTTAAAAg < 1:2636538/69‑1 (MQ=255) tttCATTCCGGCGCACGCTAACAATTTTCAGCATCGTTTAAGGGCTTGTCTATCCCGCACTTAAAAGCTg > 1:2210476/1‑70 (MQ=255) tttCATTCCGGCGCACGCTAACAATTTTCAGCATCGTTTAAGGGCTTGTCTATCCCGCACTTAAAAGCTGa < 1:2538620/71‑1 (MQ=255) cATTCCGGCGCACGCTAACAATTTTCAGCATCGTTTAAGGGCTTGTCTATCCCGc < 1:1988599/55‑1 (MQ=255) cATTCCGGCGCACGCTAACAATTTTCAGCATCGTTTAAGGGCTTGTCTATCCCGCACTTAAAAGCTGAAg < 1:3448391/70‑1 (MQ=255) ttCCGGCGCACGCTAACAATTTTCAGCATCGTTTAAGGGCTTGTCTATCCCGCACTTAAAAGCt < 1:2434040/64‑1 (MQ=255) ttCCGGCGCACGCTAACAATTTTCAGCATCGTTTAAGGGCTTGTCTATCCCGCACTTAAAAGCTGAAg > 1:250409/1‑68 (MQ=255) ttCCGGCGCACGCTAACAATTTTCAGCATCGTTTAAGGGCTTGTCTATCCCGCACTTAAAAGCTGAAGCg < 1:2057108/70‑1 (MQ=255) | GGCAGTTTAAGCGCCGGGTATGAAAGACAGAAACGATTTCTGATACATCAGAGTGATCTGTATTTCATTCCGGCGCACGCTAACAATTTTCAGCATCGTTTAAGGGCTTGTCTATCCCGCACTTAAAAGCTGAAGCG > minE/805177‑805313 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |