| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 833,894 | C→T | 20.0% | D784D (GAC→GAT) | narG → | nitrate reductase 1, alpha subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 833,894 | 0 | C | T | 20.0% | 104.0 / 19.8 | 50 | D784D (GAC→GAT) | narG | nitrate reductase 1, alpha subunit |
| Reads supporting (aligned to +/- strand): ref base C (21/19); new base T (6/4); total (27/23) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.36e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.61e-01 | |||||||||||
CTGGAAGGCAAGCTGGATCTGGTGGTTACGCTGGACTTCCGTCTGTCGAGCACCTGTCTCTATTCCGACATCATTTTGCCGACGGCGACCTGGTACGAAAAAGACGACATGAATACTTCGGATATGCATCCGTTTATTC > minE/833826‑833964 | attgAAGGCAAGCTCGACCTGCTGGTGACGCTCGACTTCCGCATGTCCAGTACATGCCTGTTCTCCGatat < 1:78509/68‑1 (MQ=255) tGGAAGGCAAGCTGGATCTGGTGGTTACGCTGGACTTCCGTCTGTCGAGCACCTGTCTCTATTCCGAcat > 1:3906359/1‑70 (MQ=255) tGGAAGGCAAGCTGGATCTGGTGGTTACGCTGGACTTCCGTCTGTCGAGCACCTGTCTCTATTCCGAcat > 1:1794463/1‑70 (MQ=255) gAAGGCAAGCTGGATCTGGTGGTTACGCTGGACTTCCGTCTGTCGAGCACCTGTCTCTATTCCGAcatca < 1:2543467/70‑1 (MQ=255) gAAGGCAAGCTGGATCTGGTGGTTACGCTGGACTTCCGTCTGTCGAGCACCTGTCTCTATTCCGAcataat > 1:1805447/1‑71 (MQ=255) aGGCAAGCTGGATCTGGTGGTTACGCTGGACTTCCGTCTGTCGAGCACCTGTCTCTATTCCGACATCAttt < 1:2738845/71‑1 (MQ=255) aGGCAAGCTGGATCTGGTGGTTACGCTGGACTTCCGTCTGTCGAGCACCTGTCTCTATTCCGACATCAttt < 1:2103152/71‑1 (MQ=255) aGGCAAGCTGGATCTGGTGGTTACGCTGGACTTCCGTCTGTCGAGCACCTGTCTCTATTCCGACATCAtt > 1:2705971/1‑70 (MQ=255) ggCAAGCTGGATCTGGTGGTTACGCTGGACTTCCGTCTGTCGAGCACCTGTCTCTATTCCGACATCAtttt < 1:3019309/71‑1 (MQ=255) gCAAGCTGGATCTGGTGGTTACGCTGGACTTCCGTCTGTCGAGCACCTGTCTCTATTCCGACATCATTTTg > 1:465022/1‑71 (MQ=255) gCTGGATCTGGTGGTTACGCTGGACTTCCGTCTGTCGAGCACCTGTCTCTATTCCGACATCATTTTGCCGa > 1:996399/1‑71 (MQ=255) cTGGATCTGGTGGTTACGCTGGACTTCCGTCTGTCGAGCACCTGTCTCTATTCCGACATCATTTTGCCGAc < 1:2875369/71‑1 (MQ=255) tCTGGTGGTTACGCTGGACTTCCGTCTGTCGAGCACCTGTCTCTATTCCGACATCATTTTGCCGACGGCGa > 1:1051907/1‑71 (MQ=255) cTGGTGGTTACGCTGGACTTCCGTCTGTCGAGCACCTGTCTCTATTCCGACATCATTTTGCCGACGGCGAc > 1:1257131/1‑71 (MQ=255) tggtggTTACGCTGGACTTCCGTCTGTCGAGCACCTGTCTCTATTCCGACATCATTTTGCCGAc > 1:2466527/1‑64 (MQ=255) gtggtTACGCTGGACTTCCGTCTGTCGAGCACCTGTCTCTATTCCGACATCATTTTGCCGACGGCGACCt < 1:3694872/70‑1 (MQ=255) gtggtTACGCTGGACTTCCGTCTGTCGAGCACCTGTCTCTATTCCGACATCATTTTGCCGACGGCGACCTg > 1:1699652/1‑71 (MQ=255) tggtTACGCTGGACTTCCGTCTGTCGAGCACCTGTCTCTATTCCGACATCATTTTGCCGACGGCGACCTgg < 1:2478699/71‑1 (MQ=255) ggtTACGCTGGACTTCCGTCTGTCGAGCACCTGTCTCTATTCCGACATCATTTTGCCGACGGCGACCTgg > 1:2964215/1‑70 (MQ=255) ggtTACGCTGGACTTCCGTCTGTCGAGCACCTGTCTCTATTCCGACATCATTTTGCCGACGGCGACCTgg > 1:2571116/1‑70 (MQ=255) gtTACGCTGGACTTCCGTCTGTCGAGCACCTGTCTCTATTCCGACATCATTTTGCCGACGGCGACCTGGt < 1:1800876/70‑1 (MQ=255) aCGCTGGACTTCCGTCTGTCGAGCACCTGTCTCTATTCCGACATCATTTTGCCGACGGCGACCTg > 1:1969392/1‑65 (MQ=255) aCGCTGGACTTCCGTCTGTCGAGCACCTGTCTCTATTCCGACATCATTTTGCCGACGGCGACCTg > 1:2002814/1‑65 (MQ=255) cGCTGGACTTCCGTCTGTCGAGCACCTGTCTCTATTCCGACATCATTTTGCCGACGGCGACCTGGTACGaa < 1:1824569/71‑1 (MQ=255) gCTGGACTTCCGTCTGTCGAGCACCTGTCTCTATTCCGAc < 1:704334/40‑1 (MQ=255) gCTGGACTTCCGTCTGTCGAGCACCTGTCTCTATTCCGACATCATTTTGCCGACGGCGACCTGGTACGaaa < 1:1861217/71‑1 (MQ=255) gCTCGACTTCCGCATGTCCAGTACCTGCCTGTTCTCCGATATCGTTCTGCCCACCGCCACCTGGTACGaaa < 1:2948002/71‑1 (MQ=255) tcgACTTCCGCATGTCCAGTACCTGCCTGTTCTCCGATATCGTTCTGCCCACCGCCACCTGGTACGaaa > 1:3614129/3‑69 (MQ=255) tcgACTTCCGCATGTCCAGTACCTGCCTGTTCTCCGATATCGTTCTGCCCACCGCCACCTGGTACGaa > 1:1667589/3‑68 (MQ=255) tGGACTTCCGTCTGTCGAGCACCTGTCTCTATTCCGACATCATTTTGCCGACGGCGAc > 1:1817918/1‑58 (MQ=255) cgACTTCCGCATGTCCAGTACCTGCCTGTTCTCCGATATCGTTCTGCCCACCGACACCTGGTACGaaa > 1:2271443/2‑68 (MQ=255) gACTTCCGTCTGTCGAGCACGTGTCTCTATTCCGACATCATTTTGCCGACGGCGACCTGGTACGaaaaat < 1:1768595/70‑2 (MQ=255) gACTTCCGCATGTCCAGTACCTGCCTGTTCTCCGATATCGTTCTGCCCACCGCCACCTGGTACGAAAAAga > 1:1895780/1‑71 (MQ=255) ttCCGTCTGTCGAGCACCTGTCTCTATTCCGAcatca < 1:3573381/37‑1 (MQ=255) ttCCGTCTGTCGAGCACCTGTCTCTATTCCGAcatca < 1:3568828/37‑1 (MQ=255) ttCCGTCTGTCGAGCACCTGTCTCTATTCCGACATCATTTTGCCGACGGCGACCt < 1:1625578/55‑1 (MQ=255) ttCCGTCTGTCGAGCACCTGTCTCTATTCCGACATCATTTTGCCGACGGCGACCt < 1:2947024/55‑1 (MQ=255) tGTCCAGTACCTGCCTGTTCTCCGATATCGTTCTGCCCACCGCCACCTGGTACGaaa < 1:2073247/57‑1 (MQ=255) tCGAGCACCTGTCTCTATTCCGACATCATTTTGCCGACGGCGACCTGGTACGAAAAAGACGACATGaa < 1:3617365/68‑1 (MQ=255) tCGAGCACCTGTCTCTATTCCGACATCATTTTGCCGACGGCGACCTGGTACGAAAAAGACGACATGAATAc > 1:1785461/1‑71 (MQ=255) gAGCACCTGTCTCTATTCCGACATCATTTTGCCGACGGCGACCTGGTACGAAAAAGACGACATGAATACtt > 1:1507433/1‑71 (MQ=255) aGCACCTGTCTCTATTCCGACATCATTTTGCCGACgg > 1:2317658/1‑37 (MQ=255) tGTCTCTATTCCGACATCATTTTGCCGACGGCGACCTGGTACGAAAAAGACGACATg < 1:2630184/57‑1 (MQ=255) gTCTCTATTCCGACATCATTTTGCCGACGGCGAcc < 1:1438584/35‑1 (MQ=255) actctATTCCGACATCATTTTGCCGACGGCTACCTg > 1:3879545/2‑36 (MQ=38) ctctATTCCGACATCATTTTGCCGACGGCGACCTGGTACGAAAAAGACGACATGAATACTTCGGATATGCa > 1:1652325/1‑71 (MQ=255) ttctCCGATATCGTTCTGCCCACCGCCACCTGGTACGAAAAAGACGATATGAACACCTCGGATATGCAt < 1:2153056/66‑1 (MQ=255) ttCCGACATCATTTTGCCGACGGCGACCTGGTACGAAAAAGACGACATGaa < 1:601654/51‑1 (MQ=255) ttCCGACATCATTTTGCCGACGGCGACCTGGTACGAAAAAGACGACATGAATACTTCGGATATGCATCCg < 1:2145552/70‑1 (MQ=255) tCCGACATCATTTTGCCGACGGCGACCTGGTACGaaaaa > 1:1879485/1‑39 (MQ=255) tCCGACATCATTTTGCCGACGGCGACCTGGTACGAAAAAGACGACATGAATACTTCGGATATGCATCCGtt > 1:729285/1‑71 (MQ=255) ccGACATCATTTTGCCGACGGCGACCTGGTACGaa > 1:1191007/1‑35 (MQ=255) ccGACATCATTTTGCCGACGGCGACCTGGTACGAAAAAGACGACATGAATACTTCGGATATGCATc > 1:406587/1‑66 (MQ=255) cGATATCGTTCTGCCCACCGCCACCTGGTACGAAAAAGACGATATGAACACCTCGGa > 1:2581712/1‑57 (MQ=255) cGATATCGTTCTGCCCACCGCCACCTGGTACGAAAAAGACGATATGAACACCTCGGATATGCATCCGTTTa < 1:1145252/71‑1 (MQ=255) cGATATCGTTCTGCCCACCGCCACCT‑GTACGAAAAAGACGATATGAACACCTCGGATATGc > 1:684424/1‑61 (MQ=255) gACATCATTTTGCCGACGGCGACCTGGTACGAAAAAGACGACATGAATACTTCGGATATGCATCCGt < 1:2051805/67‑1 (MQ=255) gACATCATTTTGCCGACGGCGACCTGGTACGAAAAAGACGACATGAATACTTCGGATATGCATCCGt < 1:3459817/67‑1 (MQ=255) catcatTTTGCCGACGGCGACCTGGTACGAAAAAGACGACATGAATACTTCGGATATGCATCCGTTTATTc < 1:720934/71‑1 (MQ=255) catcatTTTGCCGACGGCGACCTGGTACGAAAAAGACGACATGAATACTTCGGATATGCATCCGTTTATTc < 1:169395/71‑1 (MQ=255) | CTGGAAGGCAAGCTGGATCTGGTGGTTACGCTGGACTTCCGTCTGTCGAGCACCTGTCTCTATTCCGACATCATTTTGCCGACGGCGACCTGGTACGAAAAAGACGACATGAATACTTCGGATATGCATCCGTTTATTC > minE/833826‑833964 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |