Predicted mutation
evidence seq id position mutation freq annotation gene description
RA minE 834,182 T→C 15.9% G880G (GGT→GGC narG → nitrate reductase 1, alpha subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*minE834,1820TC15.9% 146.4 / 19.9 63G880G (GGT→GGCnarGnitrate reductase 1, alpha subunit
Reads supporting (aligned to +/- strand):  ref base T (23/30);  new base C (6/4);  total (29/34)
Fisher's exact test for biased strand distribution p-value = 4.92e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

TGCCGCTGAACTGGCGCAGCCGCTGGATGTGAAAGACTGGAAAAAAGGCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTATCCGGCGACTTACGAACGCTTTACCTCTAT  >  minE/834113‑834250
                                                                     |                                                                    
tGCCGCTGAACTGGCGCAGCCGCTGGATGTGAAAGACTGGAAAAAAGGCGAGTGCGACCTGATCCCAGGt                                                                      >  1:3216224/1‑70 (MQ=255)
  ccGCTGAACTGGCGCAGCCGCTGGATGTGAAAGACTGGAAAAAAGGCGAGTGCGACCTGATCCCAGGTaa                                                                    <  1:1014080/70‑1 (MQ=255)
   cGCTGAACTGGCGCAGCCGCTGGATGTGAAAGACTGGAAAAAAGGCGAGTGCGACCTGATCCCAGGTaaaa                                                                  >  1:3435869/1‑71 (MQ=255)
             gcgcAGCCGCTGGATGTGAAAGACTGGAAAAAAGGCGAGTGCGACCTGATCCCAGGTAAAACCGCGCcaca                                                        <  1:877372/71‑1 (MQ=255)
             gcgcAGCCGCTGGATGTGAAAGACTGGAAAAAAGGCGAGTGCGACCTGATCCCAGGTAAAACCGCGCcaca                                                        >  1:2600445/1‑71 (MQ=255)
                 aGCCGCTGGATGTGAAAGACTGGAAAAAAGGCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACAtt                                                    <  1:3157929/71‑1 (MQ=255)
                 aGCCGCTGGATGTGAAAGACTGGAAAAAAGGCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACAt                                                     >  1:747776/1‑70 (MQ=255)
                   ccGCTGGATGTGAAAGACTGGAAAAAAGGCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACAt                                                     <  1:2032425/68‑1 (MQ=255)
                   ccGCTGGATGTGAAAGACTGGAAAAAAGGCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACATTAt                                                  <  1:2250446/71‑1 (MQ=255)
                    cGCTGGATGTGAAAGACTGGAAAAAAGGCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACAt                                                     <  1:3408732/67‑1 (MQ=255)
                      cTGGATGTGAAAGACTGGAAAAAAGGCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACAt                                                     <  1:13583/65‑1 (MQ=255)
                      cTGGATGTGAAAGACTGGAAAAAAGGCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACAt                                                     <  1:2183706/65‑1 (MQ=255)
                        ggATGTGAAAGACTGGAAAAAAGGCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACATTATGGTCg                                             >  1:3828412/1‑71 (MQ=255)
                          aTGTGAAAGACTGGAAAAAAGGCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACATTa                                                   <  1:233607/63‑1 (MQ=255)
                                aaGACTGTAAAAAAGGCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACATTATGGTCGTAGAgcgc                                     <  1:2203861/71‑1 (MQ=255)
                                 aGACTGGAAAAAAGGCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACATTATGGTCGTAGAgcgc                                     >  1:3061287/1‑70 (MQ=255)
                                   aCTGGAAAAAAGGCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGAt                                  <  1:1542809/71‑1 (MQ=255)
                                     tGGAAAAAAGGCGAGTGCGACCTGATCCCAGGTaa                                                                    <  1:364169/35‑1 (MQ=255)
                                       gAAAAAAGGCGAGTGCGACCTGATCCCAGGTaaaa                                                                  >  1:3710496/1‑35 (MQ=255)
                                       gAAAAAAGGCGAGTGCGACCTGATCCCAGGTAAAACCgcgc                                                            >  1:1986784/1‑41 (MQ=255)
                                       gAAAAAAGGCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTa                                <  1:3722169/69‑1 (MQ=255)
                                       gAAAAAAGGCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTAt                               <  1:1140874/70‑1 (MQ=255)
                                       gAAAAAAGGCGAGTGCGACCAGATCCCAGGTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTa                                <  1:3300199/69‑1 (MQ=255)
                                        aaaaaaGGCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTa                                <  1:1007052/68‑1 (MQ=255)
                                        aaaaaaGGCGAGTGCGACCTGATCCCAGGTAAAACCGAGCCACACAtt                                                    <  1:3055504/48‑1 (MQ=255)
                                         aaaaaGGCGAGTGCGACCTGATCCCAGGTAAAACcgc                                                              >  1:2432850/1‑37 (MQ=255)
                                         aaaaaGGCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTa                                <  1:2253779/67‑1 (MQ=255)
                                         aaaaaGGCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTa                                <  1:2411981/67‑1 (MQ=255)
                                         aaaaaGGCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTa                                <  1:1219952/67‑1 (MQ=255)
                                          aaaaGGCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACATTATg                                                 >  1:2076887/1‑49 (MQ=255)
                                          aaaaGGCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACATTATGGTAGt                                            <  1:549649/54‑1 (MQ=255)
                                            aaGGCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACATTATGGTCGTag                                          >  1:1314382/1‑54 (MQ=255)
                                              ggCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTATCCGGCGAc                       >  1:296099/1‑71 (MQ=255)
                                              ggCGAATGCGATCTGATTCCAGGCAAAACCGCGCCGAATATTGTGGCGGTGGAGCGCGACTACCCTGCTAc                       <  1:834024/71‑1 (MQ=255)
                                               gCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTATCCGGCGACt                      <  1:3167794/71‑1 (MQ=255)
                                                cGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTATCCGGCGACtt                     <  1:3174812/71‑1 (MQ=255)
                                                   gTGCGACCTGATCCCAGGTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTATCCGGCGACTTAc                   >  1:92043/1‑70 (MQ=255)
                                                    tGCGATCTGATTCCAGGCAAAACCGCGCCGAATATTGTGGCGGTGGAGCGCGACTACCCTGCTACGTATGa                 <  1:3664380/71‑1 (MQ=255)
                                                       gACCTGATCCCAGGTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTATCCGGCGACTTAc                   <  1:2486990/66‑1 (MQ=255)
                                                         ccTGATCCCAGGTAAAACCGCGCCACACATTATGGTCGTa                                           <  1:588364/40‑1 (MQ=255)
                                                         ccTGATCCCAGGTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTATCCGGCGACTTACGAACGCt            >  1:953478/1‑71 (MQ=255)
                                                          cTGATCCCAGGTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTATCCGGCGACTTACGAACGCtt           <  1:2009306/71‑1 (MQ=255)
                                                           tGATCCCAGGTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTATCCGGCGACTTACGAACGCtt           >  1:1517072/1‑70 (MQ=255)
                                                            gATCCCAGGTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTATCCGGCGACTTACGAACGCTTTa         >  1:2449633/1‑71 (MQ=255)
                                                             attccAGGCAAAACCGCGCCGAATATTGTGGCGGTGGAGCGCGACTACCCTGCTACGTATGAACGCtt           <  1:2850084/65‑1 (MQ=255)
                                                             attccAGGCAAAACCGCGCCGAATATTGTGGCGGTGGAGCGCGACTACCCTGCTACGTATGAACGCTTTAc        >  1:1821970/4‑71 (MQ=255)
                                                             aTCCCAGGTAAAACCGCGCCACACATTATGGTCGTAGAgc                                       <  1:2495032/40‑1 (MQ=255)
                                                             aTCCCAGGTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTATCCGGCGACTTACGAACGCTTTAc        <  1:600680/71‑1 (MQ=255)
                                                              ttccAGGCAAAACCGCGCCGAATATTGTGGCGGTGGAGCGCGACTACCCTGCTACGTATGAACGCTTTAcc       >  1:1029086/3‑71 (MQ=255)
                                                              ttccAGGCAAAACCGCGCCGAATATTGTGGCGGTGGAGCGCGACTACCCTGCTACGTATGAACGCTTTAcc       <  1:708956/69‑1 (MQ=255)
                                                              ttccAGGCAAAACCGCGCCGAATATTGTGGCGGTGGAGCGCGACTACCCTGCTACGTATGAACGCTTTAcc       >  1:3436047/3‑71 (MQ=255)
                                                               tccAGGCAAAACCGCGCCGAATATTGTGGCGGTGGAGCGCGACTACCCTGCTACGTATGAACGCTTTACct      >  1:198545/2‑71 (MQ=255)
                                                                ccAGGTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTATCCgg                           >  1:1851382/1‑49 (MQ=255)
                                                                ccAGGTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTATCCGGCGACTTACGAAc               <  1:223077/61‑1 (MQ=255)
                                                                 cAGGTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTATCCGGCGACTTACGAACGCTTTACctc     >  1:1208483/1‑70 (MQ=255)
                                                                 cAGGCAAAACCGCGCCGAATATTGTGGCGGTGGAGCGCGACTACCCTGCTACGTATGAACGCTTTACctcg    >  1:1074586/1‑70 (MQ=255)
                                                                 cAGGCAAAACCGCGCCGAATATTGTGGCGGTGGAGCGCGACTACCCTGCTACGTATGAACGCTTTACctcg    >  1:2751193/1‑70 (MQ=255)
                                                                  aGGTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTATCCGGc                          <  1:1726855/48‑1 (MQ=255)
                                                                  aGGTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTATCCGGCGACTTACGaa                >  1:388248/1‑58 (MQ=255)
                                                                  aGGTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTATCCGGCGACTTACGAACGCTTTAc        >  1:3209724/1‑66 (MQ=255)
                                                                  aGGTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTATCCGGCGACTTACGAACGCTTTACCTCTa   >  1:3951602/1‑71 (MQ=255)
                                                                  aGGTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTATCCGGCGACTTACGAACGCTTTACCTCTa   >  1:378712/1‑71 (MQ=255)
                                                                   ggTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTATCCGGCGACTTACGAACGCTTTACCTCTAt  >  1:3084154/1‑71 (MQ=255)
                                                                    gTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTATCCGGCGACt                      >  1:799961/1‑50 (MQ=255)
                                                                     |                                                                    
TGCCGCTGAACTGGCGCAGCCGCTGGATGTGAAAGACTGGAAAAAAGGCGAGTGCGACCTGATCCCAGGTAAAACCGCGCCACACATTATGGTCGTAGAGCGCGATTATCCGGCGACTTACGAACGCTTTACCTCTAT  >  minE/834113‑834250

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: