| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 834,446 | C→A | 12.9% | A968A (GCC→GCA) | narG → | nitrate reductase 1, alpha subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 834,446 | 0 | C | A | 12.9% | 163.7 / 7.9 | 54 | A968A (GCC→GCA) | narG | nitrate reductase 1, alpha subunit |
| Reads supporting (aligned to +/- strand): ref base C (14/33); new base A (3/4); total (17/37) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.65e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.63e-01 | |||||||||||
CTGAACACCGCAATTGATGCGGCAGAGATGATCCTGACACTGGCACCGGAAACCAACGGTCAGGTAGCCGTGAAAGCCTGGGCTGCCCTGAGCGAATTTACCGGTCGTGACCATACGCATCTGGCGCTGAATAAAG > minE/834378‑834513 | cTGAACACCGCAATTGATGCGGCAGAGATGATCCTGACACTGGCACCGGAAACCAACGGTCAGGTAGCCGt > 1:2403764/1‑71 (MQ=255) acacCGCAATTGATGCGGCAGAGATGATCCTGACACTTGCACCGGAAACCAACGGTCAGGTAGCCGt < 1:456816/67‑1 (MQ=255) acacCGCAATTGATGCGGCAGAGATGATCCTGACACTGGCACCGGAAACCAACGGTCAGGTAGCCGTGaaa < 1:2051503/71‑1 (MQ=255) acacCGCAATTGATGCCGCAGAGATGATCCTGACACTGGCACCGGAAACCAACGGTCAGGTAGCCGTGaaa < 1:2554568/71‑1 (MQ=255) acCGCAATTGATGCGGCAGAGATGATCCTGACACTGGCACCGGAAACCAACGGTCAGGTAGCCGTGAAAGc < 1:2230757/71‑1 (MQ=255) acCGCAATTGATGCGGCAGAGATGATCCTGACACTGGCACCGGAAACCAACGGTCAGGTAGCCGTGAAAGc < 1:429588/71‑1 (MQ=255) ccGCCATTGACGCTTCAGAAGTGATTCTGGCACTGGCACCGGAAACCAACGGTCATGTTGCAGTCAAAGcg < 1:3944539/71‑2 (MQ=255) ccGCCATTGACGCTTCAGAAGTGATTCTGGCACTGGCACCGGAAACCAACGGTCATGTTGCAGTCAAAGcg < 1:2130776/71‑2 (MQ=255) ccaTTGACGCTTCAGAAGTGATTCTGGCACTGGCACCGGAAACCAACGGTCATGTTGCAGTCAAAGCGTgg > 1:3805666/3‑71 (MQ=255) aTTGATGCGGCAGAGATGATCCTGACACTGGCACCGGAAACCAACGGTCAGGTAGCCGTGAAAGCCTGGGc > 1:687598/1‑71 (MQ=255) aTTGACGCTTCAGAAGTGATTCTGGCACTGGCACCGGAAACCAACGGTCATGTTGCAGTCAAAGCGTggc < 1:3499303/70‑2 (MQ=255) gATGCGGCAGAGATGATCCTGACACTGGCACCGGAAACCAACGGTCAGGTAGCCGt > 1:3449376/1‑56 (MQ=255) gATGCGGCAGAGATGATCCTGACACTGGCACCGGAAACCAACGGTCAGGTAGCCGt > 1:2294964/1‑56 (MQ=255) aTGCGGCAGAGATGATCCTGACACTGGCACCGGAAACCAACGGTCAGGTAGCCGTGAAAGCCTGGGCTGcc < 1:3659694/71‑1 (MQ=255) cGGCAGAGATGATCCTGACACTGGCACCGGAAACCAACGGTCAGGTAGCCGTGAAAGCCTGGGCTGCCCt < 1:3012662/70‑1 (MQ=255) cGGCAGAGATGATCCTGACACTGGCACCGGAAACCAACGGTCAGGTAGCCGTGAAAGCCTGGGCTGCCCTg < 1:3552959/71‑1 (MQ=255) ggCAGAGATGATCCTGACACTGGCACCGGAAACCAACGGTCAGGTAGCCGTGAAAGCCTGGGCTGCCCt > 1:1773243/1‑69 (MQ=255) ggCAGAGATGATCCTGACACTGGCACCGGAAACCAACGGTCAGGTAGCCGTGAAAGCCTGGGCTGCCCTGa < 1:810064/71‑1 (MQ=255) ggCAGAGATGATCCTGACACTGGCACCGGAAACCAACGGTCAGGTAGCCGTGAAAGCCTGGGCTGCCCTGa < 1:1390835/71‑1 (MQ=255) agagATGATCCTGACACTGGCACCGGAAACCAACGGTCAGGTAGCCGTGAAAGCCTGGGCTGCCCTGAGCg < 1:96780/71‑1 (MQ=255) agagATCATCCTGACACTGGCACCGGAAACCAACGGTCAGGTAGCCGTGAAAGCCTGGGCTGCCCTGAGCg < 1:101367/71‑1 (MQ=255) agaTGATCCTGACACTGGCACCGGAAACCAACGGTCAGGTAGCCGTGAAAGCCTGGGCTGCCCTGAGCGaa < 1:73807/71‑1 (MQ=255) atgatCCTGACACTGGCACCGGAAACCAACGGTCAGGTAGCCGTGAAAGc < 1:3776411/50‑1 (MQ=255) atgatCCTGACACTGGCACCGGAAACCAACGGTCAGGTAGCCGTGAAAGCCTGGGCt < 1:920004/57‑1 (MQ=255) atgatCCTGACACTGGCACCGGAAACCAACGGTCAGGTAGCCGTGAAAGCCTGGGCTGCCCTGAGCGAAtt > 1:927810/1‑71 (MQ=255) tgatTCTGGCACTGGCACCGGAAACCAACGGTCATGTTGCAGTCAAAg < 1:1362179/48‑1 (MQ=255) tgatCCTGACACTGGCACCGGAAACCAACGGTCAGGTAGCCGTGAAAGCCTGGGCTGCCCTGAGCGAAttt < 1:3740928/71‑1 (MQ=255) tgatCCTGACACTGGCACCGGAAACCAACGGTCAGGTAGCCGTGAAAGCCTGGGCTGCCCTGAGCGAAttt < 1:3262197/71‑1 (MQ=255) gatCCTGACACTGGCACCGGAAACCAACGGTCAGGTAGCCGTGAAAGCCTGGGCTGCCCTGAGCGAAttt < 1:2664816/70‑1 (MQ=255) tCCTGACACTGGCACCGGAAACCAACGGTCAGGTAGCCGTGAAAGCCTGGGCTGCCCTGAGCGaa > 1:3335422/1‑65 (MQ=255) tCCTGACACTGGCACCGGAAACCAACGGTCAGGTAGCCGTGAAAGCCTGGGCTGCCCTGAGCGAAt > 1:1154044/1‑66 (MQ=255) cTGACACTGGCACCGGAAACCAACGGTCAGGTAGCCGTGAAAGCCTGGGCTGCCCTGAGCGAATTTACCgg > 1:3104904/1‑71 (MQ=255) gACACTGGCACCGGAAACCAACGGTCAGGTAGCCGTGAAAGCCTGGGCTGCCCTGAGCGAAtt < 1:1590634/63‑1 (MQ=255) cacTGGCACCGGAAACCAACGGTCAGGTAGCCGTGAAAGCCTGGGCTGCCCTGAGCGa < 1:2247197/58‑1 (MQ=255) cTGGCACCGGAAACCAACGGTCAGGTAGCCGTGAAAGCCTGGGCTGCCCTGAGCGAATTTACCGGTCGt < 1:2422971/69‑1 (MQ=255) aCCGGAAACCAACGGTCAGGTAGCCGTGAAAGCCTGGGCTGCCCTGAGCGAATTTACCGGTCGTGACCATa > 1:779164/1‑71 (MQ=255) cGGAAACCAACGGTCAGGTAGCCGTGAAAGCCTGGGCTGCCCTGAGCGAATTTACCGGTCGTGACCATAc < 1:3126901/70‑1 (MQ=255) ggAAACCAACGGTCAGGTAGCCGTGAAAGCCTGGGCTGCCCTGAGCGAATTTACCGGt < 1:493808/58‑1 (MQ=255) ggAAACCAACGGTCAGGTAGCCGTGAAAGCCTGGGCTGCCCTGAGCGAATTTACCGGTCGTGACCATACGc < 1:2654637/71‑1 (MQ=255) ggAAACCAACGGTCAGGTAGCCGTGAAAGCCTGGGCTGCCCTGAGCGAATTTACCGGTCGTGACCATACGc < 1:2134806/71‑1 (MQ=255) gAAACCAACGGTCATGTTGCAGTCAAAGCGTGGCAGGCGCTGGGCGAGATCACCGGGCGCGAACATACCCa > 1:1739912/1‑71 (MQ=255) aaaCCAACGGTCAGGTAGCCGTGAAAGCCTGGGCTGCCCTGAGCGAAttt > 1:2353246/1‑50 (MQ=255) aaaCCAACGGTCAGGTAGCCGTGAAAGCCTGGGCTGACCTGAGCGAATTTAc < 1:3307540/52‑1 (MQ=255) aaCCAACGGTCATGTTGCAGTCAAAGCGTGGCAGGCGCTGGGCGAGATCACCGGGCGCGAACATACCCATc > 1:2476558/1‑71 (MQ=255) cAACGGTCAGGTAGCCGTGAAAGCCTGGGCTGCCCTGAGCGAATTTACCGGTCGTg < 1:1609248/56‑1 (MQ=255) cAACGGTCAGGTAGCCGTGAAAGCCTGGGCTGCCCTGAGCGAATTTACCGGTCGTGACCATa > 1:1111526/1‑62 (MQ=255) cAACGGTCAGGAAGCCGTGAAAGCCTGGGCTGCCCTGAGCGAATTTAc < 1:1499716/48‑1 (MQ=255) aCGGTCAGGTAGCCGTGAAAGCCTGGGCTGCCCTGAGCGAATTTACCGGTCGTGACCATACGCATCTGgcg < 1:98880/71‑1 (MQ=255) cGGTCAGGTAGCCGTGAAAGCCTGGGCTGCCCTGAGCGAATTTACCGGTCGt < 1:1740392/52‑1 (MQ=255) tCAGGTAGCCGTGAAAGCCTGGGCTGCCCTGAGCGAATTTACCGGTCGTGACCATACGCATCTGGCGCt < 1:1918581/69‑1 (MQ=255) ggTAGCCGTGAAAGCCTGGGCTGCCCTGAGCGAATTTACCGGTCGTGACCATACGCATCTGGCGCTGAATa < 1:3896094/71‑1 (MQ=255) gTAGCCGTGAAAGCCTGGGCTGCCCTGAGCGAATTTACCGGTCGTGACCATACGCATCTGGCGCTGAATa > 1:1021293/1‑70 (MQ=255) aGCCGTGAAAGCCTGGGCTGCCCTGAGCGAATTTACCGGTCGTGACCATACGCATCTGGCGCTGAATa > 1:2346364/1‑68 (MQ=255) gCCGTGAAAGCCTGGGCTGCCCTGAGCGAATTTACCGGTCGTGACCATACGCATCTGGCGCTGAATAaag < 1:2065168/70‑1 (MQ=255) ccGTGAAAGCCTGGGCTGCCCTGAGCGAATTTACCGGTCGTGACCa < 1:2867127/46‑1 (MQ=255) | CTGAACACCGCAATTGATGCGGCAGAGATGATCCTGACACTGGCACCGGAAACCAACGGTCAGGTAGCCGTGAAAGCCTGGGCTGCCCTGAGCGAATTTACCGGTCGTGACCATACGCATCTGGCGCTGAATAAAG > minE/834378‑834513 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |