Predicted mutation
evidence seq id position mutation freq annotation gene description
RA minE 190,078 A→T 47.5% V525V (GTA→GTT ldcC → lysine decarboxylase 2, constitutive

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*minE190,0780AT47.5% 8.0 / 56.4 40V525V (GTA→GTTldcClysine decarboxylase 2, constitutive
Reads supporting (aligned to +/- strand):  ref base A (11/10);  new base T (3/16);  total (14/26)
Fisher's exact test for biased strand distribution p-value = 2.19e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CCCGGCGGCGCTGGTAGCAAAATTCCTCGACGAACGTGGGATCGTAGTAGAGAAAACCGGCCCTTATAACCTGCTGTTTCTCTTTAGTATTGGCATCGATAAAACCAAAGCAATGG  >  minE/190030‑190145
                                                |                                                                   
cccGGCGGCGCTGGTAGCAAAATTCCTCGACGAACGTGGGATCGTAGTAGAGAAAACCGGCCCTTATAAcc                                               >  1:1743702/1‑71 (MQ=255)
 ccGGCGGCGCTGGTAGCAAAATTCCTCGACGAACGTGGGATCGTAGTAGAGAAAACCGGCCCTTATAACct                                              <  1:2744473/71‑1 (MQ=255)
   ggcggcGCTGGTAGCAAAATTCCTCGACGAACGTGGGATCGTAGTAGAGAAAACCGGcc                                                        <  1:2081397/59‑1 (MQ=255)
   ggcggcGCTGGTAGCAAAATTCCTCGACGAACGTGGGATCGTAGTAGAGAAAACCGGCCCTTATAACctgc                                            >  1:728347/1‑71 (MQ=255)
          cTGGTAGCAAAATTCCTCGACGAACGTGGGATCGTAGTAGAGAAAACCg                                                           >  1:1643744/1‑49 (MQ=255)
             gTAGCAAAATTCCTCGACGAACGTGGGATCGTAGTAGAGAAAACCGGCCCTTATAACCTGCTGTTTCTCtt                                  >  1:3645604/1‑71 (MQ=255)
             gTAGCAAAATTCCTCGACGAACGTGGGATCGTAGTAGAGAAAACCGGCCCTTATAACCTGCTGTTTCTCtt                                  <  1:77913/71‑1 (MQ=255)
                  gaaaTACCTCGACGAACATGGCATCGTTGTTGAGAAAACCGGTCCGTATAACctgctg                                          <  1:3118408/57‑1 (MQ=19)
                  gaaaTACCTCGACGAACATGGCATCGTTGTTGAGAAAACCGGTCCGTATAACctgctg                                          <  1:742703/57‑1 (MQ=19)
                  aaaaTTCCTCGACGAACGTGGGATCGTAGTAGAGAAAACCGGCCCTTATAACCTGCTGTTTCTCTTTAGTa                             <  1:3716269/71‑1 (MQ=255)
                   aaaTACCTCGACGAACATGGCATCGTTGTTGAGAAAACCGGTCCGtata                                                  <  1:722563/49‑1 (MQ=12)
                   aaaTACCTCGACGAACATGGCATCGTTGTTGAGAAAACCGGTCCGTATAACCTGCTGTTCCTGTTCAGCAt                            <  1:2288050/71‑1 (MQ=255)
                    aaTTCCTCGACGAACGTGGGATCGTAGTAGAGAAAACCGGCCCTTATAACCTGCTGTTTCTCTTTAGTAt                            >  1:1495476/1‑70 (MQ=255)
                    aaTACCTCGACGATCATGGCATCGTTGTTGAGAAAACCGGTCCGTATAACCTGCTGTTCCTGTTCAGCAtc                           >  1:3036022/1‑70 (MQ=255)
                    aaTACCTCGACGAACATGGCATCGTTGTTGAGAAAACCGGTCCGTATAACCTGCTGTTCCTGTTCAGCAt                            <  1:1999686/70‑1 (MQ=255)
                     aTTCCTCGACGAACGTGGGATCGTAGTAGAGaaaa                                                              >  1:504756/1‑35 (MQ=255)
                     aTTCCTCGACGAACGTGGGATCGTAGTAGAGAAAACCGGCCCTTATAACCTGCTGTTtct                                     <  1:460844/60‑1 (MQ=255)
                     aTTCCTCGACGAACGTGGGATCGTAGTAGAGAAAACCGGCCCTTATAACCTGCTGTTTCTCTTTAGTATTg                          <  1:3616792/71‑1 (MQ=255)
                         cTCGACGAACATGGCATCGTTGTTGAGAAAACCGGTCCGTATAACCTGCTGTTCCTGTTCAGCATCGGTAt                      <  1:2701062/71‑1 (MQ=255)
                         cTCGACGAACATGGCATCGTTGTTGAGAAAACCGGTCCGTATAACCTGCTGTTCCTGTTCAGCATCGGTAt                      <  1:2073456/71‑1 (MQ=255)
                           cgacgaACGTGGGATCGTAGTAGAGAAAACCGGCCCTTATAACCTGCTGTTTCTCTTTAGTATTGGCATc                     >  1:2661880/1‑70 (MQ=255)
                            gacgaACGTGGGATCGTAGTAGAGAAAACCGGCCCTTATAACCTGCTGTTTCTCTTTAGTATTGGCATCg                    <  1:3073030/70‑1 (MQ=255)
                            gacgaACGTGGGATCGTAGTAGAGAAAACCGGCCCTTATAACCTGCTGTTTCTCTTTAGTATTGGCATCGa                   >  1:1524719/1‑71 (MQ=255)
                            gacgaACATGGCATCGTTGTTGAGAAAACCGGTCCGTATAACCTGCTGTTCCTGTTCAGCATCGGTATCg                    <  1:498848/70‑1 (MQ=255)
                             acgaACGTGGGATCGTAGTAGAGAAAACCGGCCCTTATAAc                                                >  1:2580940/1‑41 (MQ=255)
                             acgaACATGGCATCGTTGTTGAGAAAACCGGTCCGTATAACCTGCTGTTCCTGTTCAGCATCGGTATCGAt                  <  1:742748/71‑1 (MQ=255)
                              cgaACATGGCATCGTTGTTGAGAAAACCGGTCCGTATAACCTGCTGTTCCTGTTCAGCATCGGTATCGAt                  >  1:2295930/1‑70 (MQ=255)
                                aaCGTGGGATCGTAGTAGAGAAAACCGGCCCTTATAACctg                                             <  1:1476725/41‑1 (MQ=255)
                                 aCGTGGGATCGTAGTAGAGAAAACCGGCCCTTATAACCTGCTGTTTCTCTTTAGTATTGGCATCGATaaaa              <  1:3567069/71‑1 (MQ=255)
                                   gTGGGATCGTAGTAGAGAAAACCGGCCCTTATAACctg                                             >  1:2180636/1‑38 (MQ=255)
                                    tGGCATCGTTGTTGAGAAAACCGGTCCGTATAACCTGCTGTTCCTGTTCAGCATCGGTATCGATAAGACCa           <  1:1405728/71‑1 (MQ=255)
                                     ggcaTCGTTGTTGAGAAAACCGGTCCGTATAACCTGCTGTTCCTGTTCAGCATCGGTATCGAt                  <  1:1101192/60‑1 (MQ=12)
                                      gcaTCGTTGTTGAGAAAACCGGTCCGTATAACCTGCTGTTCCTGTTCAGCATCGGTATCGATAAGACCaaa         <  1:2785490/69‑1 (MQ=255)
                                       caTCGTTGTTGAGAAAACCGGTCCGTATAACCTGCTGTTCCTGTTCAGCATCGGTATCGATAAGACCAAAg        <  1:3696164/70‑1 (MQ=255)
                                       caTCGTTGTTGAGAAAACCGGTCCGTATAACCTGCTGTTCCTGTTCAGCATCGGTATCGATAAGACCAAAg        <  1:3691571/70‑1 (MQ=255)
                                        aTCGTAGTAGAGAAAACCGGCCCTTATAACCTGCTGTTTCTCTTTAGTATTg                          >  1:39732/1‑52 (MQ=255)
                                        aTCGTAGTAGAGAAAACCGGCCCTTATAACCTGCTGTTTCTCTTTAGTATTGGCATCGATAAAACCaa          <  1:92617/68‑1 (MQ=255)
                                         tCGTTGTTGAGAAAACCGGTCCGTATAACCTGCTGTTCCTGTTCAGCATCGGTATCGATAAGACCAAAGCa      <  1:3732692/71‑1 (MQ=255)
                                         tCGTTGTTGAGAAAACCGGTCCGTATAACCTGCTGTTCCTGTTCAGCATCGGTATCGATAAGACCAAAGCa      >  1:2204207/1‑71 (MQ=255)
                                         tCGTTGTTGAGAAAACCGGTCCGTATAACCTGCTGTTCCTGTTCAGCATCGGTATCGATAAGACCAAAGCa      <  1:1021879/71‑1 (MQ=255)
                                              gtagAGAAAACCGGCCCTTATAACCTGCTGTTTCTCTTTAGTATTGGCATCGATAAAACCAAAGCAATgg  <  1:720342/70‑1 (MQ=255)
                                              gtagAGAAAACCGGCCCTTATAACCTGCTGTTTCTCTTTAGTATTGGCATCGATAAAACCAAAGCAATgg  <  1:1373617/70‑1 (MQ=255)
                                                |                                                                   
CCCGGCGGCGCTGGTAGCAAAATTCCTCGACGAACGTGGGATCGTAGTAGAGAAAACCGGCCCTTATAACCTGCTGTTTCTCTTTAGTATTGGCATCGATAAAACCAAAGCAATGG  >  minE/190030‑190145

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: