Predicted mutation
evidence seq id position mutation freq annotation gene description
RA minE 910,932 G→A 27.0% G58S (GGC→AGC)  ycjV → predicted sugar transporter subunit

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*minE910,9320GA27.0% 109.0 / 39.4 63G58S (GGC→AGC) ycjVpredicted sugar transporter subunit
Reads supporting (aligned to +/- strand):  ref base G (27/19);  new base A (8/9);  total (35/28)
Fisher's exact test for biased strand distribution p-value = 5.69e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.80e-01

TTTGTCGGCCCGTCGGGCTGCGGTAAGTCGACCACCCTGCGCATGATTGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAATGAATGACGTTCCAGCCAAAGCACGCAATATAGCGA  >  minE/910863‑910998
                                                                     |                                                                  
tttGTCGGCCCGTCGGGCTGCGGTAAGTCGACCACCCTGCGCATGATTGCCGGGCTTGAGGAGATCAgcgg                                                                   >  1:2389796/1‑71 (MQ=255)
 ttGTCGGCCCGTCGGGCTGCGGTAAGTCGACCACCCTGCGCATGATTGCCGGGCTTGAGGAGATCAgcggc                                                                  >  1:734960/1‑71 (MQ=255)
 ttGTCGGCCCGTCGGGCTGCGGTAAGTCGACCACCCTGCGCATGATTGCCGGGCTTGAGGAGATCAgcggc                                                                  >  1:3799680/1‑71 (MQ=255)
  tGTCGGCCCGTCGGGCTGCGGTAAGTCGCCCACCCTGCGCATGATTGCCGGGCTTGAGGAGATCAgcggcg                                                                 >  1:3880915/1‑71 (MQ=255)
  tGTCGGCCCGTCGGGCTGCGGTAAGTCGACCACCCTGCGCATGATTGCCGGGCTTGAGGAGATCAgcgg                                                                   >  1:2161284/1‑69 (MQ=255)
   gTCGGCCCGTCGGGCTGCGGTAAGTCGACCACCCTGCGCATGATTGCCGGGCTTGAGGAGATCAgcggcgg                                                                >  1:277638/1‑71 (MQ=255)
     cGGCCCGTCGGGCTGCGGTAAGTCGACCACCCTGCGCATGATTGCCGGGCTTGAGGAGATCAgcggcggc                                                               >  1:3742553/1‑70 (MQ=255)
     cGGCCCGTCGGGCTGCGGTAAGTCGACCACCCTGCGCATGATTGCCGGGCTTGAGGAGATCAgcggcggc                                                               >  1:2329500/1‑70 (MQ=255)
      ggaccGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCAccagcggcg                                                              <  1:1592846/67‑1 (MQ=2)
      ggaccGTCTGGCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCAccagcggcg                                                              <  1:1619946/67‑1 (MQ=2)
         ccGTCGGGCTGCGGTAAGTCGACCACCCTGCGCATGATTGCCGGGCTTGAGGAGATCAGCGGCGGCGAt                                                            >  1:1711046/1‑69 (MQ=255)
         ccGTCGGGCTGAGGTAAGTCGACCACCCTGCGCATGATTGCCGGGCTTGAGGAGATCAGCGGCGGCGAt                                                            >  1:2792596/1‑69 (MQ=255)
          cGTCGGGCTGCGGTAAGTCGACCACCCTGCGCATGATTGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTg                                                         <  1:402850/71‑1 (MQ=255)
            tctggCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCACCAGCGGCGACCTGtt                                                       >  1:2772037/4‑71 (MQ=9)
             ctggCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCACCAGCGGCGACCTGtt                                                       >  1:3500159/3‑70 (MQ=16)
             cGGGCTGCGGTAAGTCGACCACCCTGCGCATGATTGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGtt                                                       >  1:3393274/1‑70 (MQ=255)
              gggCTGCGGTAAGTCGACCACCCTGCGCATGATTGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGtt                                                       <  1:2482425/69‑1 (MQ=255)
              gggCTGCGGTAAGTCGACCACCCTGCGCATGATTGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGa                                                     >  1:3199998/1‑71 (MQ=255)
              gggCTGCGGTAAGTCGACCACCCTGCGAATGATTGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGa                                                     >  1:405442/1‑71 (MQ=255)
               ggCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCACCAGCGGCGACCTGTTCAt                                                    >  1:884731/1‑71 (MQ=16)
                gCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCACCAGCGGCGACCTGttca                                                     <  1:3264086/69‑3 (MQ=16)
                gCTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCACCAGCGGCGACCTGTTCAt                                                    <  1:2602541/70‑1 (MQ=255)
                 cTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCACCAGCGGCGACCTGttc                                                      <  1:3803538/67‑2 (MQ=255)
                 cTGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCACCAGCGGCGACCTGttc                                                      <  1:1165107/67‑2 (MQ=255)
                  tGCGGTAAGTCGACCACCCTGCGCATGATTGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGa                                                 >  1:3366709/1‑71 (MQ=255)
                  tGCGGTAAGTCGACCACCCTGCGCATGATTGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGa                                                 >  1:757461/1‑71 (MQ=255)
                  tGCGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCACCAGCGGCGACCTGTTCATCg                                                  >  1:1239188/1‑70 (MQ=255)
                   gCGGTAAGTCGACCACCCTGCGCATGATTGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGAc                                                >  1:3785816/1‑71 (MQ=255)
                    cGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCACCAGCGGCGACCTGTTCATCggtg                                               <  1:1457940/71‑4 (MQ=255)
                    cGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCACCAGCGGCGACCTGTTCATCggt                                                >  1:3516723/1‑68 (MQ=255)
                    cGGTAAATCGACTTTACTGCGCATGATTGCCGGGCTTGAGACGATCACCAGCGGCGACCTGTTCATCggt                                                >  1:1997516/1‑68 (MQ=255)
                      gTAAGTCGACCACCCTGCGCATGATTGCCGGGCTTGAGGAGATCAGCGGAGGCGATCTGTTGATCGACGGc                                             <  1:1072535/71‑1 (MQ=255)
                      gTAAGTCGACAACCCTGCGCATGATTGCCGGGCTTGAGGAGATCAgcggcggcg                                                              >  1:178822/1‑54 (MQ=255)
                        aaGTCGACCACCCTGCGCATGATTGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCa                                            >  1:547885/1‑70 (MQ=255)
                        aaGTCGACCACCCTGCGCATGATTGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCa                                            >  1:237389/1‑70 (MQ=255)
                         aGTCGACCACCCTGCGCATGATTGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCaaa                                          >  1:3891566/1‑71 (MQ=255)
                            cGACCACCCTGCGCATGATTGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCAAACg                                        >  1:122709/1‑70 (MQ=255)
                               ccaccCTGCGCATGATTGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCAAACgaatg                                    <  1:2317138/71‑1 (MQ=255)
                                  tacTGCGCATGATTGCCGGGCTTGAGACGATCACCAGCGGCGACCTGTTCATCGGTGAGAAACggatgaat                                 >  1:456523/3‑71 (MQ=255)
                                  tacTGCGCATGATTGCCGGGCTTGAGACGATCACCAGCGGCGACCTGTTCATCGGTGAGAAACggatgaat                                 >  1:2320139/3‑71 (MQ=255)
                                  cccTGCGCATGATTGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTg                                                      <  1:182999/50‑1 (MQ=255)
                                  cccTGCGCATGATTGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCAAACgaatgaat                                 <  1:1210238/71‑1 (MQ=255)
                                   ccTGCGCATGATTGCCGGGCTTGAGGAGATCAGAGGCGGCGATCTGTTGATCGACGGCAAACgaatgaat                                 >  1:2466108/1‑70 (MQ=255)
                                   acTGCGCATGATTGCCGGGCTTGAGACGATCACCAGCGGCGACCTGTTCATCGGTGAGAAACggatgaat                                 <  1:265057/69‑1 (MQ=255)
                                   acTGCGCATGATTGCCGGGCTTGAGACGATCACCACCGGCGACCTGTTCATCGGTGAGAAACggatgaat                                 <  1:258972/69‑1 (MQ=255)
                                     tGCGCATGATTGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAATGAATGAc                              >  1:2870064/1‑71 (MQ=255)
                                     tGCGCATGATTGCCGGGCTTGAGACGATCACCAGCGGCGacc                                                           <  1:2039685/42‑3 (MQ=25)
                                       cgcATGATTGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAATGAATGACGt                            <  1:3079900/71‑1 (MQ=255)
                                        gcATGATTGCCGGGCTTGAGACGATCACCAGCGGCGACCTGTTCATCGGTGAGAAACGGATGAATGAcact                           <  1:3139622/71‑4 (MQ=255)
                                         cATGATTGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAATGAATGACGTTc                          <  1:3528822/71‑1 (MQ=255)
                                          aTGATTGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAATGAATGACGTTc                          >  1:508475/1‑70 (MQ=255)
                                              ttGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAatgaatga                               >  1:3324965/1‑61 (MQ=255)
                                              ttGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAATGAATGACGTTCCAGc                      >  1:185290/1‑70 (MQ=255)
                                                gCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAATGAATGACGTTCCAGCCa                    <  1:411602/70‑1 (MQ=255)
                                                 ccGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAATGAATGACGTTCCAGCCaaa                  <  1:3094100/71‑1 (MQ=255)
                                                 ccGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAATGAATGACGTTCCAGCCaaa                  <  1:3546863/71‑1 (MQ=255)
                                                  cGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAATGAATGACGTTCCAGCCAAAg                 >  1:787759/1‑71 (MQ=255)
                                                  cGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGAAGGCAAACGAATGAATGACGTTCCAGCCa                    >  1:3686585/1‑68 (MQ=255)
                                                    ggCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCAAACgaatgaa                                  <  1:2016084/52‑1 (MQ=255)
                                                    ggCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAATGAATGACGTTc                          <  1:3383577/60‑1 (MQ=255)
                                                    ggCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAATGAATGACGTTCCAGCCAAAGCa               <  1:2495902/71‑1 (MQ=255)
                                                      cTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAATGAATGACGTTCCAGCCAAAGCACg             >  1:2175551/1‑71 (MQ=255)
                                                       ttGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAATGAATGACGTTCCAGCCAAAGCACg             >  1:299627/1‑70 (MQ=255)
                                                         gaggagATCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAATGAATGACGTTCCAGCCAAAGCACGCa           <  1:2967968/70‑1 (MQ=255)
                                                            gagaTCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAATGAATGACGTTCCAGCCAAAGCACGCAatat       <  1:2144879/71‑1 (MQ=255)
                                                               aTCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAATGAATGACGTTCCa                        <  1:529555/51‑1 (MQ=255)
                                                               aTCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAATGAATGACGTTCCAGCCAAAGCACGCAATATAg     >  1:1035646/1‑70 (MQ=255)
                                                               aTCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAATGAATGACGTTCCAGCCAAAGCACGCAATATAGc    >  1:2779520/1‑71 (MQ=255)
                                                                tCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAATGAATGACGTTCCAGCCAAAGCACGCAATATAGCg   <  1:2536765/71‑1 (MQ=255)
                                                                tCAGCGGCGGCGATCTGTTGATCGACGGAAAACGAATGAATGACGTTCCAGCCAAAGCACGCAATATAGCg   <  1:736420/71‑1 (MQ=255)
                                                                 cAGCGGCGGCGATCTGTTGATCGACGGCAAACGAATGAATGACGTTCCa                        >  1:1083363/1‑49 (MQ=255)
                                                                 cAGCGGCGGCGATCTGTTGATCGACGGCAAACGAATGAATGACGTTCCa                        >  1:1745553/1‑49 (MQ=255)
                                                                 cAGCGGCGGCGATCTGTTGATCGACGGCAAACGAATGAATGACGTTCCa                        >  1:753462/1‑49 (MQ=255)
                                                                 cAGCGGCGGCGATCTGTTGATCGACGGCAAACGAATGAATGACGTTCCAGCCAAAGCACGCAATATAGCGa  >  1:231175/1‑71 (MQ=255)
                                                                    cggcggcgATCTGTTGATCGACGGCAAACGAATGAATGACGTTCCAGCCAAAGCACg             >  1:2544544/1‑57 (MQ=255)
                                                                    cggcggcgATCTGTTGATCGACGGCAAACGAATGAATGACGTTCCAGCCAAAGCACg             >  1:2261490/1‑57 (MQ=255)
                                                                     |                                                                  
TTTGTCGGCCCGTCGGGCTGCGGTAAGTCGACCACCCTGCGCATGATTGCCGGGCTTGAGGAGATCAGCGGCGGCGATCTGTTGATCGACGGCAAACGAATGAATGACGTTCCAGCCAAAGCACGCAATATAGCGA  >  minE/910863‑910998

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: