| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,008,267 | C→T | 21.4% | C340C (TGC→TGT) | ydgI → | predicted arginine/ornithine antiporter transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,008,267 | 0 | C | T | 21.4% | 171.3 / 40.1 | 84 | C340C (TGC→TGT) | ydgI | predicted arginine/ornithine antiporter transporter |
| Reads supporting (aligned to +/- strand): ref base C (35/31); new base T (7/11); total (42/42) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.26e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 | |||||||||||
CCCGCGCATTTTTGCGCGCCAGAACGCACAAGCTGCGCCATCCGCCTCACTGTGGTTGACCAACATCTGCGTGCAAATTTGTCTGGTACTCATCTGGCTGACCGGTTCCGATTACAACACGTTGCTGACCATCGCCTC > minE/1008198‑1008335 | cccGCGCATTTTTGCGCGCCAGAACGCACAAGCTGCGCCATCCGCCTCACTGTGGTTGACCAACATCTGc > 1:3079729/1‑70 (MQ=255)cccGCGCATTTTTGCGCGCCAGAACGCACAAGCTGCGCCATCCGCCTCACTGTGGTTGACCAACATCTGc < 1:2176824/70‑1 (MQ=255) ccGCGCATTTTTGCGCGCCAGAACGCACAAGCTGCGCCATCCGCCTCACTGTGGTTGACCAACATCTGCGt > 1:559644/1‑71 (MQ=255) ccGCGCATTTTTGCGCGCCAGAACGCACAAGCTGCGCCATCCGCCTCACTGTGGTTGACCAACATCTGCGt > 1:187861/1‑71 (MQ=255) cgcgCATTTTTGCGCGCCAGAACGCACAAGCTGCGCCATCCGCCTCACTGTGGTTGACCAACATCTGCGTg > 1:2449160/1‑71 (MQ=255) cgcgCATTTTTGCGCGCCAGAACGCACAAGCTGCGCCATCCGCCTCACTGTGGTTGACCAACATCTGCGTg < 1:1518920/71‑1 (MQ=255) cgcgCATTTTTGCGCGCCAGAACGCACAAGCTGCGCCATCCGCCTCACTGTGGTT‑ACCAACATCTGCGTg > 1:1077372/1‑70 (MQ=255) gcgcATTTTTGCGCGCCAGAACGCACAAGCTGCGCCATCCGCCTCACTGTGGTTGACCAACATCTGCGTg > 1:2487689/1‑70 (MQ=255) aTTTTTGCGCGCCAGAACGCACAAGCTGCGCCATCCGCCTCACTGTGGTTGACCAACATCTGTGTGCAAAt < 1:3356579/71‑1 (MQ=255) tttttGCGCGCCAGAACGCACAAGCTGCGCCATCCGCCTCACTGTGGTTGACCAACATCTGTGTGCAAAtt > 1:3308891/1‑71 (MQ=255) ttttGCGCGCCAGAACGCACAAGCTGCGCCATCCGCCTCACTGTGGTTGACCAACATCTGc > 1:3760498/1‑61 (MQ=255) tttGCGCGCCAGAACGCACAAGCTGCGCCATCCGCCTCACTGTGGTTGACCAACATCTGCGTGCAAATTTg > 1:1313379/1‑71 (MQ=255) tttGCGCGCCAGAACGCACAAGCTGCGCCATCCGCCTCACTGTGGTTGACCAACATCTGCGTGCAAATTTg > 1:818012/1‑71 (MQ=255) ttGCGCGCCAGAACGCACAAGCTGCGCCATCCGCCTCACTGTGGTTGACCAACATCTGCGTGCAAATTTg < 1:3376247/70‑1 (MQ=255) ttGCGCGCCAGAACGCACAAGCTGCGCCATCCGCCTAACTGTGGTTGACCAACATCTGCGTGCAAAttt < 1:1941201/69‑1 (MQ=255) gcgcgcCAGAACGCACAAGCTGCGCCATCCGCCTCACTGTGGTTGACCAACATCTGCGTGCAAATTTGt < 1:2051594/69‑1 (MQ=255) cgcCAGAACGCACAAGCTGCGCCATCCGCCTCACTGTGGTTGACCAACATCTGCGTGCAAATTTGTCTgg > 1:1133596/1‑70 (MQ=255) cgcCAGAACGCACAAGCTGCGCCATCC‑CCTCACTGTGGTTGACCAACATCTGCGTGCAAATTTGTCTGGTa < 1:3148062/71‑1 (MQ=255) gcCAGAACGCACAAGCTGCGCCATCCGCCTCACTGTGGTTGACCAACATCTGCGTGCAAATTTGTCTGGTa > 1:3812258/1‑71 (MQ=255) cAGAACGCACAAGCTGCGCCATCCGCCTCACTGTGGTTGACCAACATCTGCGTGCAAATTTGTCTGGTACt > 1:2989902/1‑71 (MQ=255) cAGAACGCACAAGCTGCGCCATCCGCCTCACTGTGGTTGACCAACATCTGCGTGCAAATTTGTCTGGTACt > 1:64800/1‑71 (MQ=255) cAGAACGCACAAGCTGCGCCATCCGCCTCACTGTGGTTGACCAACATCTGCGTGCAAATTTGTCTGGTACt < 1:1348632/71‑1 (MQ=255) aGAACGCACAAGCTGCGCCATCCGCCTCACTGTGGTTGACCAACATCTGTGTGCAAATTTGTCTGGTACTc < 1:1430436/71‑1 (MQ=255) aGAACGCACAAGCTGCGCCATCCGCCTCACTGTGGTTGACCAACATCTGCGTGCAAATTTGTCTGGTACt > 1:1148343/1‑70 (MQ=255) gAACGCACAAGCTGCGCCATCCGCCTCACTGTGGTTGACCAACATCTGCGTGCAAATTTGt > 1:400869/1‑61 (MQ=255) gAACGCACAAGCTGCGCCATCCGCCTCACTGTGGTTGACCAACATCTGCGTGCAAATTTGTCTGGTACTCa < 1:1285880/71‑1 (MQ=255) aaCGCACAAGCTGCGCCATCCGCCTCACTGTGGTTGACCAACATCTGCGTGCAAATTTGTCTGGTACTCAt < 1:1282652/71‑1 (MQ=255) aaCGCACAAGCTGCGCCATCCGCCTCACTGTGGTTGACCAACATCTGCGTGCAAATTTGTCTGGTACTCAt < 1:1966787/71‑1 (MQ=255) aCGCACAAGCTGCGCCATCCGCCTCACTGTGGTTGACCAACATCTGCGTGCAAATTTGTCTGGTACTCATc > 1:2033346/1‑71 (MQ=255) aCGCACAAGCTGCGCCATCCGCCTCACTGTGGTTGACCAACATCTGCGTGCAAATTTGTCTGGTACTCATc < 1:601473/71‑1 (MQ=255) cGCACAAGCTGCGCCATCCGCCTCACTGTGGTTGACCAACATCTGCGTGCAAAt < 1:1488590/54‑1 (MQ=255) cGCACAAGCTGCGCCATCCGCCTCACTGTGGTTGACCAACATCTGCGTGCAAAt < 1:1515321/54‑1 (MQ=255) caAGCTGCGCCATCCGCCTCACTGTGGTTGACCAACATCTGCGTGCAAATTTGTCTGGTACTCATCTGGCt < 1:718124/71‑1 (MQ=255) caAGCTGCGCCATCCGCCTCACTGTGGTTGACCAACATCTGCGTGCAAATTTGTCTGGTACTCATCTGGCt < 1:3139009/71‑1 (MQ=255) aaGCTGCGCCATCCGCCTCACTGTGGTTGACCAACATCTGCGTGCAAATTTGTCTGGTACTCATCTGGCt > 1:85101/1‑70 (MQ=255) aGCTGCGCCATCCGCCTCACTGTGGTTGACCAACATCTGCGTGCAAATTTGTc > 1:679559/1‑53 (MQ=255) aGCTGCGCCATCCGCCTCACTGTGGTTGACCAACATCTGCGTGCAAATTTGTc > 1:1195798/1‑53 (MQ=255) gCTGCGCCATCCGCCTCACTGTGGTTGACCAACATCTGCGTGCAAAttt < 1:3476296/49‑1 (MQ=255) gCTGCGCCATCCGCCTCACTGTGGTTGACCAACATCTGCGTGCAAATTTGTCTGGTACTCATCTGGCTGAc < 1:1140345/71‑1 (MQ=255) cTGCGCCATCCGCCTCACTGTGGTTGACCAACATCTGTGTGCAAATTTGTCTGGTACTCATCTGGCTGAcc < 1:487810/71‑1 (MQ=255) cgcCATCCGCCTCACTGTGGTTGACCAACATCTGTGTGCAAATTTGTCTGGTACTCAt > 1:1726354/1‑58 (MQ=255) cgcCATCCGCCTCACTGTGGTTGACCAACATCTGTGTGCAAATTTGTCTGGTACTCATCTgg > 1:574112/1‑62 (MQ=255) cgcCATCCGCCTCACTGTGGTTGACCAACATCTGTGTGCAAATTTGTCTGGTACTCATCTgg > 1:2899465/1‑62 (MQ=255) cgcCATCCGCCTCACTGTGGTTGACCAACATCTGCGTGCAAATTTGt < 1:2630288/47‑1 (MQ=255) cgcCATCCGCCTCACTGTGGTTGACCAACATCTGCGTGCAAATTTGTCTGGTACTCATCTGGCTGACCgg < 1:3420696/70‑1 (MQ=255) cgcCATCCGCCTCACTGTGGTTGACCAACATCTGCGTGCAAATTTGTCTGGTACTCATCTGGCTGACCGGt < 1:3329947/71‑1 (MQ=255) cgcCATCCGCCTCACTGTGGTTGACCAACATCTGCGTGCAAATTTGTCTGGTACTCATCTGGCTGACCGGt < 1:984744/71‑1 (MQ=255) gcCATCCGCCTCACTGTGGTTGACCAACATCTGTGTGCAAAt < 1:1864404/42‑1 (MQ=255) gcCATCCGCCTCACTGTGGTTGACCAACATCTGCGTGCAAAt < 1:2138904/42‑1 (MQ=255) ccATCCGCCTCACTGTGGTTGACCAACATCTGCGTGCAAATTTGTCTGGTACTCATCTGGCTGACCGGTTc > 1:1513929/1‑71 (MQ=255) cGCCTCACTGTGGTTGACCAACATCTGCGTGCAAAttt > 1:242499/1‑38 (MQ=255) cGCCTCACTGTGGTTGACCAACATCTGCGTGCAAATTTGTCTGGTACTCATCt > 1:2383425/1‑53 (MQ=255) cGCCTCACTGTGGTTGACCAACATCTGCGTGCAAATTTGTCTGGTACTCATCTGGCTGACCGGTTCCGAt > 1:1170375/1‑70 (MQ=255) gCCTCACTGTGGTTGACCAACATCTGTGTGCTAATTTGTCTGGTACTCATCTGGCTGACCGGTTCCGAt < 1:2672282/69‑1 (MQ=255) gCCTCACTGTGGTTGACCAACATCTGTGTGCAAATTTGTCTGGTACTCATCt < 1:2182830/52‑1 (MQ=255) ccTCACTGTGGTTGACCAACATCTGTGTGCAAATTTGTCTGGTACTCATCTGGCTGACCGGTTCCGATTac < 1:3203136/71‑1 (MQ=255) ccTCACTGTGGTTGACCAACATCTGCGTGCAAATTTGTc < 1:3015185/39‑1 (MQ=255) cTCACTGTGGTTGACCAACATCTGTGTGCAAATTTGTCTGGTACTCATCTGGCTGACCGGTTCCGATTaca < 1:2284491/71‑1 (MQ=255) cTCACTGTGGTTGACCAACATCTGCGTGCAAATTTGTCTGGTACTCTTCTGGCTGACCGGTTCCGTTTaca < 1:730208/71‑1 (MQ=255) tCACTGTGGTTGACCAACATCTGCGTGCAAATTTGTCTGGTACTCATCTGGCTGACCGGTTCCGATTacaa > 1:2380923/1‑71 (MQ=255) tCACTGTGGTTGACCAACATCTGCGTGCAAATTTGTCTGGTACTCATCTGGCTGACCGGTTCCGATTac < 1:1988741/69‑1 (MQ=255) aCTGTGGTTGACCAACATCTGCGTGCAAATTTGTCTGGTACTCATCTGGCTGACCGGTTCCGATTacaaca > 1:2291833/1‑71 (MQ=255) aCTGTGGTTGACCAACATCTGCGTGCAAATTTGTCTGGTACTCATCTGGCTGACCGGTTCCGATTacaaca > 1:691343/1‑71 (MQ=255) cTGTGGTTGACCAACATCTGCGTGCAAATTTGTCTGGTACTCATCTGGCTGACCGGTTCCGATTACAacac > 1:2160889/1‑71 (MQ=255) tgtgGTTGACCAACATCTGTGTGCAAATTTGTCTGGTACTCATCTGGCTGACCGGTTCCGAtt < 1:3189464/63‑1 (MQ=255) gtgGTTGACCAACATCTGTGTGCAAATTTGTCTGGTACTCATCTGGCTGACCGGTTCCGATTACAACACGt > 1:1415594/1‑71 (MQ=255) gtgGTTGACCAACATCTGCCTGCAAATTTGTCTGGTACTCATCTGGCTGa > 1:1776386/1‑50 (MQ=255) tgGTTGACCAACATCTGTGTGCAAATTTGTCTGGTACTCATCTGGCTGACCGGTTCCGATTac > 1:2530322/1‑63 (MQ=255) tgGTTGACCAACATCTGTGTGCAAATTTGTCTGGTACTCATCTGGCTGACCGGTTCCGATTac > 1:3776942/1‑63 (MQ=255) tgGTTGACCAACATCTGCGTGCAAATTTGTCTGGTACTCATCTGGCTGACCGGTTCCGATTACAACACGt < 1:2071198/70‑1 (MQ=255) gTTGACCAACATCTGCGTGCAAATTTGTCTGGTACTCATCTGGCTGACCGGTTCCGAtt < 1:2418195/59‑1 (MQ=255) gACCAACATCTGCGTGCAAATTTGTCTGGTACTCATCTGGCTGACCGGTTCCGATTACAACACGTTg > 1:1418606/1‑67 (MQ=255) gACCAACATCTGCGTGCAAATTTGTCTGGTACTCATCTGGCTGACCGGTTCCGATTACAACACGTTg > 1:2257301/1‑67 (MQ=255) gACCAACATCTGCGTGCAAATTTGTCTGGTACTCATCTGGCTGACCGGTTCCGATTACAACACGTTGCTGa > 1:2313872/1‑71 (MQ=255) gACCAACATCTGCGTGCAAATTTGTCTGGTACTCATCTGGCTGACCGGTTCCGATTACAACACGTTGCTGa > 1:483025/1‑71 (MQ=255) aCCAACATCTGCGTGCAAATTTGTCTGGTACTCATCTGGCTGACCGGTTCCGATTACAACACGTTGCt > 1:1583152/1‑68 (MQ=255) aCCAACATCTGCGTGCAAATTTGTCTGGTACTCATCTGGCTGACCGGTTCCGATTACAACACGTTGCt > 1:3058617/1‑68 (MQ=255) aCCAACATCTGCGTGCAAATTTGTCTGGTACTCATCTGGCTGACCGGTTCCGATTACAACACGTTGCt > 1:3348670/1‑68 (MQ=255) ccAACATCTGCGTGCAAATTTGTCTGGTACTCATCTGGCTGACCgg < 1:1421614/46‑1 (MQ=255) ccAACATCTGCGTGCAAATTTGTCTGGTACTCATCTGGCTGACCGGTTCCGATTACAACACGTTGCTGAcc < 1:2599008/71‑1 (MQ=255) aCATCTGTGTGCAAATTTGTCTGGTACTCATCTGGCTGACCGGTTCCGATTACAACACGTTGCTGACCATc < 1:1503771/71‑1 (MQ=255) aCATCTGTGTGCAAATTTGTCTGGTACTCATCTGGCTGACCGGTTCCGATTACAACACGTTGCTGACCATc < 1:3256936/71‑1 (MQ=255) cATCTGCGTGCAAATTTGTCTGGTACTCATCTGGCTGa < 1:1509120/38‑1 (MQ=255) aTCTGCGTGCAAATTTGTCTGGTACTCATCTGGCTGACCGGTTcc < 1:2720836/45‑1 (MQ=255) tCTGCGTGCAAATTTGTCTGGTACTCATCTGGCTGAcc > 1:1568476/1‑38 (MQ=255) cTGCGTGCAAATTTGTCTGGTACTCATCTGGCTGACCGGTTCCGATTaca < 1:3609812/50‑1 (MQ=255) cTGCGTGCAAATTTGTCTGGTACTCATCTGGCTGACCGGTTCCGATTACAACACGTTg > 1:1222454/1‑58 (MQ=255) cGTGCAAATTTGTCTGGTACTCATCTGGCTGACCGGTTCCGATTACAACACGTTGCTGACCATCGCCTc < 1:2356283/69‑1 (MQ=255) | CCCGCGCATTTTTGCGCGCCAGAACGCACAAGCTGCGCCATCCGCCTCACTGTGGTTGACCAACATCTGCGTGCAAATTTGTCTGGTACTCATCTGGCTGACCGGTTCCGATTACAACACGTTGCTGACCATCGCCTC > minE/1008198‑1008335 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |