Predicted mutation
evidence seq id position mutation freq annotation gene description
RA minE 1,014,731 A→G 18.6% S446S (TCT→TCC fumA ← aerobic Class I fumarate hydratase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*minE1,014,7310AG18.6% 124.0 / 23.2 59S446S (TCT→TCCfumAaerobic Class I fumarate hydratase
Reads supporting (aligned to +/- strand):  ref base A (24/24);  new base G (3/8);  total (27/32)
Fisher's exact test for biased strand distribution p-value = 2.00e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.92e-01

GCTGGCTGCGGTTGCCTTTCGCCAGCATGATCATACTTCCGCCCTGCGCTTGCAGTTGATCGACATAAGAATCCATCCGTCCGGCGGTCGTTGGGCCAAGAGAACCGGAGGCATAACCTTCCGGCGTTTTGGCCGG  >  minE/1014664‑1014799
                                                                   |                                                                    
gctggctgCGGTTGCCTTTCGCCAGCATGATCATACTTCCGCCCTGCGCTTGCAGTTGATCGACATAAGaa                                                                   >  1:345416/1‑71 (MQ=255)
 ctggctgCGGTTGCCTTTCGCCAGCATGATCATACTTCCGCCCTGCGCTTGCAGTTGATCGACATAAGa                                                                    <  1:3414534/69‑1 (MQ=255)
 ctggctgCGGTTGCCTTTCGCCAGCATGATCATACTTCCGCCCTGCGCTTGCAGTTGATCGACATAAGa                                                                    <  1:3387460/69‑1 (MQ=255)
 ctggctgCGGTTGCCTTTCGCCAGCATGATCATACTTCCGCCCTGCGCTTGCAGTTGATCGACATAAGa                                                                    <  1:3302231/69‑1 (MQ=255)
    gctgCGGTTGCCTTTCGCCAGCATGATCATACTTCCGCCCTGCGCTTGCAGTTGATCGACATAAGAatcc                                                                <  1:664677/70‑1 (MQ=255)
    actgCGGTTACCTTTCGCCAGCATGATCATGCTGCCGCCGTGGGATTGCAGCAGATCCACGTAGGAgtcca                                                               <  1:3597046/70‑1 (MQ=255)
     ctgCGGTTACCTTTCGCCAGCATGATCATGCTGCCGCCGTGGGATTGCAGCAGATCCACGTAGGAgtccat                                                              <  1:1565129/71‑1 (MQ=255)
      tgCGGTTGCCTTTCGCCAGCATGATCATACTTCCGCCCTGCGCTTGCAGTTGATCGACATAAGAatccgtc                                                             >  1:453332/1‑71 (MQ=255)
      tgCGGTTACCTTTCGCCAGCATGATCATGCTGCCGCCGTGGGATTGCAGCAGATCCACGTAGGAgtcc                                                                <  1:1060785/68‑1 (MQ=255)
        cGGTTGCCTTTCGCCAGCATGATCATACTTCCGCCCTGCGCTTGCAGTTGATCGACATAAGAATCCAtccg                                                           >  1:2532283/1‑71 (MQ=255)
         ggTTGCCTTTCGCCAGCATGATCATACTTCCGCCCTGCGCTTGCAGTTGATCGACATAAGAATCCAtccgt                                                          <  1:816599/71‑1 (MQ=255)
             gCCTTTCGCCAGCATGATCATACTTCCGCCCTGCGCTTGCAGTTGATCGACATAAGAatc                                                                 <  1:2955553/60‑1 (MQ=255)
             accTTTCGCCAGCATGATCATGCTGCCGCCGTGGGATTGCAGCAGATCCACGTAGGAGTCCAtacggcctg                                                      >  1:723649/2‑69 (MQ=255)
             accTTTCGCCAGCATGATCATGCTGCCGCCGTGGGATTGCAGCAGATCCACGTAGGAGTCCAtacggcct                                                       <  1:3140327/69‑2 (MQ=255)
              ccTTTCGCCAGCATGATCATACTTCCGCCCTGCGCTTGCAGTTGATCGACATAAGAATCCATCCGTCcggc                                                     >  1:1770302/1‑71 (MQ=255)
               cTTTCGCCAGCATGATCATGCTGCCGCCGTGGGATTGCAGCAGATCCACGTAGGAgtccat                                                              <  1:2601338/61‑1 (MQ=255)
               cTTTCGCCAGCATGATCATACTTCCGCCCTGCGCTTGCAGTTGATCGACATAAGAATCCAtccgtc                                                         >  1:1039793/1‑66 (MQ=255)
                tttCGCCAGCATGATCATGCTGCCGCCGTGGGATTGCAGCAGATCCACGTAGGAGTCCATACGGCctgc                                                     <  1:586561/69‑1 (MQ=255)
                 ttCGCCAGCATGATCATGCTGCCGCCGTGGGATTGCAGCAGATCCACGTAGGAgtccatac                                                            >  1:118187/1‑59 (MQ=255)
                 ttCGCCAGCATGATCATACTTCCGCCCTGCGCTTGCAGTTGATCGACATAAGAATCCATCCGTCCGGCGGt                                                  >  1:2013825/1‑71 (MQ=255)
                 ttCGCCAGCATGATCATACTTCCGCCCTGCGCTTGCAGTTGATCGACATAAGAATCCATCCGTCCGGCGGt                                                  >  1:308783/1‑71 (MQ=255)
                 ttCGCCAGCATGATCATACTTCCGCCCTGCGCTTGCAGTTGATCGACATAAGAATCCATCCGTCCGGCGGt                                                  >  1:685522/1‑71 (MQ=255)
                  tCGCCAGCATGATCATGCTGCCGCCGTGGGATTGCAGCAGATCCACGTAGGAGTCCATACGGCCTGCGGtg                                                 >  1:3941772/1‑70 (MQ=255)
                    gCCAGCATGATCATACTTCCGCCCTGCGCTTGCAGTTGATCGACATAAGAatcc                                                                >  1:654576/1‑54 (MQ=255)
                     ccAGCATGATCATGCTGCCGCCGTGGATTGCAGCAGATCCACGTAGGAGTCCATACGGCCTGCGGTGGtt                                              <  1:852026/70‑1 (MQ=255)
                     ccAGCATGATCATACTTCCGCCCTGCGCTTGCAGTTGATCGACATAAGa                                                                    <  1:1092480/49‑1 (MQ=255)
                     ccAGCATGATCATACTTCCGCCCTGCGCTTGCAGTTGATCGACATAAGAATCCATCCGTCCGGCGGTCGtt                                              >  1:2745306/1‑71 (MQ=255)
                     ccAGCATGATCATACTTCCGCCCTGCGCTTGCAGTTGATCGACATAAGAATCCATCCGTCCGGCGGTCGtt                                              <  1:3893653/71‑1 (MQ=255)
                      cAGCATGATCATACTTCCGCCCTGCGCTTGCAGTTGATCGACATAAGAATCCATCCGTCCGGCGGTCGTTg                                             <  1:2163215/71‑1 (MQ=255)
                      cAGCATGATCATACTTCCGCCCTGCGCTTGCAGTTGATCGACATAAGAATCCATCCGTCCGGCGGTCGTTg                                             <  1:2047111/71‑1 (MQ=255)
                       aGCATGATCATACTTCCGCCCTGCGCTTGCAGTTGATCGACATAAGAATCCATCCGTCCGGCGGTCGTTg                                             >  1:1354929/1‑70 (MQ=255)
                        gCATGATCATACTTCCGCCCTGCGCTTGCAGTTGATCGACATAAGAATCCATCCGTCcggc                                                     >  1:62955/1‑61 (MQ=255)
                          aTGATCATACTTCCGCCCTGCGCTTGCAGTTGATCGACATAAGAATCCATCCGTCCGGCGGTCGTTGGGc                                          <  1:1716779/70‑1 (MQ=255)
                           tGATCATACTTCCGCCCTGCGCTTGCAGTTGATCGACATAAGAATCCATCCGTCCGGCGGTCGTTgg                                            >  1:3926520/1‑67 (MQ=255)
                               cATACTTCCGCCCTGCGCTTGCAGTTGATCGACATAAGAATCCATCCGTCCGGCGGTCGTTGGGCCaa                                       >  1:643730/1‑68 (MQ=255)
                                  aCTTCCGCCCTGCGCTTGCAGTTGATCGACATAAg                                                                     >  1:56472/1‑35 (MQ=255)
                                     tCCGCCCTGCGCTTGCAGTTGATCGACATAAGAATCCATCCGTCAGGCGGTCGTTGGGCCAAGAGAAcc                                >  1:474120/1‑69 (MQ=255)
                                      ccGCCCTGCGCTTGCAGTTGATCGACATAAGAATCCATCCGTCCGGCGGTCGTTGGGCCAAGAGAACCg                               >  1:960034/1‑69 (MQ=255)
                                      ccGCCCTGCGCTTGCAGTTGATCGACATAAGAATCCATCCGTCCGGCGGTCGTTGGGCCAAGAGAACCg                               >  1:1328016/1‑69 (MQ=255)
                                        gCCCTGCGCTTGCAGTTGATCGACATAAGAATCCATCCGTCCGGCGGTCGTTGGGCCAAGAGAACCGGAgg                           <  1:3066225/71‑1 (MQ=255)
                                          ccTGCGCTTGCAGTTGATCGACATAAGAATCCATCCGTCCGGCGGTCGTTGGGCCAAGAGAACCGGAg                            >  1:1075183/1‑68 (MQ=255)
                                            tGCGCTTGCAGTTGATCGACATAAGAATCCATCCGTCcggcg                                                    <  1:3785807/42‑1 (MQ=255)
                                            tGCGCTTGCAGTTGATCGACATAAGAATCCATCCGTCcggcg                                                    <  1:2062144/42‑1 (MQ=255)
                                            tGCCCTTGCAGTTGATCGACATAAGAATCCATCCGTCCGGCGGTCGTTGGGCCAAGAGAACCGGAGGCAt                        >  1:463026/1‑70 (MQ=255)
                                              cgcTTGCAGTTGATCGACATAAGAATCCATCCGTCCGGCGGTCGTTGGGCCAAGAGAACCGGAGGCATa                       <  1:1936669/69‑1 (MQ=255)
                                                   gCAGTTGATCGACATAAGAATCCATCCGTCCGGCGGTCGTTGGGCCAAGAGAACCGGAGGCa                         >  1:684540/1‑62 (MQ=255)
                                                   gCAGTTGATCGACATAAGAATCCATCCGTCCGGCGGTCGTTGGGCCAAGAGAACCGGAGGCATAACCtt                  <  1:2913606/69‑1 (MQ=255)
                                                   gCAGTTGATCGACATAAGAATCCATCCGTCCGGCGGTCGTTGGGCCAAGAGAACCGGAGGCATAACCTTc                 <  1:2428859/70‑1 (MQ=255)
                                                    cAGTTGATCGACATAAGAATCCATCCGTCCGGCGGTCGTTGGGCCAAGAGAACCGGAGGCATAACCTTCCg               <  1:3118911/71‑1 (MQ=255)
                                                      gTTGATCGACATAAGAATCCATCCGTCCGGCGGTCGTTGGGCCAAGAGAACCGGAGGCATAACCTTCCGGc             >  1:1241017/1‑71 (MQ=255)
                                                         gATCGACATAAGAATCCATCCGTCCGGCGGTCGTTgg                                            <  1:1774378/37‑1 (MQ=255)
                                                         gATCGACATAAGAATCCATCCGTCCGGCGGTCGTTGGGcc                                         >  1:3009677/1‑40 (MQ=255)
                                                          aTCGACATAAGAATCCATCCGTCCGGCGGTCGTTGGGCCAAGAGAACCGGAGGCATAACCTTCCGGCGttt         <  1:2785296/71‑1 (MQ=255)
                                                          aTCGACATAAGAATCCATCCGTCCGGCGGTCGTTGGGCCAAGAGAACCGGAGGCATAACCTTCCGGCGttt         <  1:3748408/71‑1 (MQ=255)
                                                          aTCCACGTAGGAGTCCATACGGCCTGCGGTGGTTGGGCCAag                                      <  1:1429219/42‑1 (MQ=255)
                                                           tCGACATAAGAATCCATCCGTCCGGCGGTCGTTGGGCCAAGAGAACCGGAGGCATAACCt                   <  1:467292/60‑1 (MQ=255)
                                                             gACATAAGAATCCATCCGTCCGGCGGTCGTTGGGCCAAGAGAACCGGAGGCATAACCTTCCGGCGTTTTg       <  1:2334704/70‑1 (MQ=255)
                                                                aTAAGAATCCATCCGTCCGGCGGTCGTTGGGCCaa                                       >  1:1737134/1‑35 (MQ=255)
                                                                 tAAGAATCCATCCGTCCGGCGGTCGTTGGGCCAAGAGAACCGGAGGCATAACCTTCCGGCGTTTTGGCCgg  <  1:3038719/71‑1 (MQ=255)
                                                                   |                                                                    
GCTGGCTGCGGTTGCCTTTCGCCAGCATGATCATACTTCCGCCCTGCGCTTGCAGTTGATCGACATAAGAATCCATCCGTCCGGCGGTCGTTGGGCCAAGAGAACCGGAGGCATAACCTTCCGGCGTTTTGGCCGG  >  minE/1014664‑1014799

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: