Predicted mutation
evidence seq id position mutation freq annotation gene description
RA minE 1,014,783 T→G 20.0% E429A (GAA→GCA) ‡ fumA ← aerobic Class I fumarate hydratase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*minE1,014,7830TG20.0% 61.9 / 18.6 40E429A (GAA→GCA) ‡fumAaerobic Class I fumarate hydratase
Reads supporting (aligned to +/- strand):  ref base T (15/17);  new base G (4/4);  total (19/21)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

GCAGTTGATCGACATAAGAATCCATCCGTCCGGCGGTCGTTGGGCCAAGAGAACCGGAGGCATAACCTTCCGGCGTTTTGGCCGGACCCGCGTAGTAAATCGGATGATCTTTGATGTACTGCGGCAGCCCTTCACCGT  >  minE/1014715‑1014852
                                                                    |                                                                     
gCAGTTGATCGACATAAGAATCCATCCGTCCGGCGGTCGTTGGGCCAAGAGAACCGGAGGCATAACCtt                                                                       <  1:2913606/69‑1 (MQ=255)
gCAGTTGATCGACATAAGAATCCATCCGTCCGGCGGTCGTTGGGCCAAGAGAACCGGAGGCATAACCTTc                                                                      <  1:2428859/70‑1 (MQ=255)
 cAGTTGATCGACATAAGAATCCATCCGTCCGGCGGTCGTTGGGCCAAGAGAACCGGAGGCATAACCTTCCg                                                                    <  1:3118911/71‑1 (MQ=255)
   gTTGATCGACATAAGAATCCATCCGTCCGGCGGTCGTTGGGCCAAGAGAACCGGAGGCATAACCTTCCGGc                                                                  >  1:1241017/1‑71 (MQ=255)
       aTCGACATAAGAATCCATCCGTCCGGCGGTCGTTGGGCCAAGAGAACCGGAGGCATAACCTTCCGGCGttt                                                              <  1:3748408/71‑1 (MQ=255)
       aTCGACATAAGAATCCATCCGTCCGGCGGTCGTTGGGCCAAGAGAACCGGAGGCATAACCTTCCGGCGttt                                                              <  1:2785296/71‑1 (MQ=255)
          gACATAAGAATCCATCCGTCCGGCGGTCGTTGGGCCAAGAGAACCGGAGGCATAACCTTCCGGCGTTTTg                                                            <  1:2334704/70‑1 (MQ=255)
              tAAGAATCCATCCGTCCGGCGGTCGTTGGGCCAAGAGAACCGGAGGCATAACCTTCCGGCGTTTTGGCCgg                                                       <  1:3038719/71‑1 (MQ=255)
                   atccatccGTCCGGCGGTCGTTGGGCCAAGAGAACCGGAGGCATAACCTTCCGGCGTTTTGGCCGGACCcg                                                  <  1:2553805/71‑1 (MQ=255)
                    tccatccGTCCGGCGGTCGTTGGGCCAAGAGAACCGGAGGCATAACCTTCCGGCGTTTTGGCCgg                                                       <  1:1531451/65‑1 (MQ=255)
                      catacGGCCTGCGGTGGTTGGGCCAAGTGAACCTGATGGATAACCGGCAGGGGTTTTCGCCGGACCcgcg                                                <  1:1982954/70‑1 (MQ=255)
                       atccGTCCGGCGGTCGTTGGGCCAAGAGAACCGGAGGCATAACCTTCCGGCGTTTTGGCCGGACCcgcg                                                >  1:2802443/1‑69 (MQ=255)
                              cggcggTCGTTGGGCCAAGAGAACCGGAGGCATAACCTTCCGGCGTTTTGGCCGGACCCGCGTAGTAAAt                                        <  1:1287834/70‑1 (MQ=255)
                              cggcggTCGTTGGGCCAAGAGAACCGGAGGCATAACCTTCCGGCGTTTTGGCCGGACCCGCGTAGTAAATc                                       >  1:188493/1‑71 (MQ=255)
                                  ggTCGTTGGGCCAAGAGAACCGGAGGCATAACCTTCCGGCGTTTTGGCCGGACCCGCGTAGTAAATCGgat                                   >  1:3787772/1‑71 (MQ=255)
                                   gtggTTGGGCCAAGTGAACCTGATGGATAACCGGCAGGGGTTTTCGCCGGACCCGCGTAGTAGATCGggtg                                  <  1:2136927/68‑1 (MQ=255)
                                   gtggTTGGGCCAAGTGAACCTGATGGATAACCGGCAGGGGTTTTCGCCGGACCCGCGTAGTAGATCGggtg                                  <  1:2527792/68‑1 (MQ=255)
                                        tGGGCCAAGAGAACCGGAGGCATAACCTTCCGGCGTTTTGGCCGGACCCGCGTAGTAAATCGGATGATCtt                             >  1:2650276/1‑71 (MQ=255)
                                         gggCCAAGTGAACCTGATGGATAACCGGCAGGGGTTTTCGCCGGACCCGCGTAGTAGATCGGGTGATCttt                            >  1:543991/1‑71 (MQ=255)
                                         gggCCAAGAGAACCGGAGGCATAACCTTCCGGCGTTTTGGCCGGACCCGCTTAGTAAATCGGATGATCtt                             <  1:2035163/70‑1 (MQ=255)
                                         gggCCAAGAGAACCGGAGGCATAACCTTCCGGCGTTTTGGCGGACCCGCGTAGTAAATCGGATGATCttt                            <  1:2515173/70‑1 (MQ=255)
                                          ggCCAAGTGAACCTGATGGATAACCGGCAGGGGTTTTCGCCGGACCCGCGTAGTAGATCGggtgat                                >  1:1382077/1‑66 (MQ=255)
                                          ggCCAAGTGAACCTGATGGATAACCGGCAGGGGTTTTCGCCGGACCCGCGTAGTAGATCGGGTGATCTTTg                           <  1:2918340/71‑1 (MQ=255)
                                          ggCCAAGAGAACCGGAGGCATAACCTTCCGGCGTTTTGGCCGGACCCGCGTAGTAAATCGGATGATCttt                            <  1:230616/70‑1 (MQ=255)
                                             cAAGAGAACCGGAGGCATAACCTTCCGGCGTTTTGGCCGGACCCGCGTAGTAAATCGGATGATCTTTGATg                        <  1:198368/71‑1 (MQ=255)
                                              aaGTGAACCTGATGGATAACCGGCAGGGGTTTTCGCCGGACCCGCgtagtaga                                         >  1:1545684/1‑51 (MQ=255)
                                              aaGTGAACCTGATGGATAACCGGCAGGGGTTTTCGCCGGACCCGCGTAGTAGAt                                        >  1:882680/1‑54 (MQ=255)
                                                     ccGGAGGCATAACCTTCCGGCGTTTTGGCCGGACCCGCGTAGTAAATCGGATGATCTTTGAt                         <  1:1613924/62‑1 (MQ=255)
                                                     ccGGAGGCATAACCTTCCGGCGTTTTGGCCGGACCCGCGTAGTAAATCGGATGATCTTTGATGTa                      >  1:3693017/1‑65 (MQ=255)
                                                     ccGGAGGCATAACCTTCCGGCGTTTTGGCCGGACCCGCGTAGTAAATCGGATGATCTTTGATGTa                      >  1:1420406/1‑65 (MQ=255)
                                                     ccGGAGGCATAACCTTCCGGCGTTTTGGCCGGACCCGCGTAGTAAATCGGATGATCTTTGATGTACTGCgg                >  1:2969959/1‑71 (MQ=255)
                                                     ccGGAGGCATAACCTTCCGGCGTTTTGGCCGGACCCGCGTAGTAAATCGGATGATCTTTGATGTACTGCgg                >  1:3517909/1‑71 (MQ=255)
                                                        gAGGCATAACCTTCCGGCGTTTTGGCCGGACCCGCGTAGTAAATCGGATGATCTTTGATGTACt                    >  1:213795/1‑64 (MQ=255)
                                                        gAGGCATAACCTTCCGGCGTTTTGGCCGGACCCGCGTAGTAAATCGGATGATCTTTGATGTACTGCGGCAg             >  1:2229896/1‑71 (MQ=255)
                                                        gAGGCATAACCTTCCGGCGTTTTGGCCGGACCCGCGTAGTAAATCGGATGATCTTTGATGTACTGCGGCAg             >  1:3896942/1‑71 (MQ=255)
                                                          ggCATAACCTTCCGGCGTTTTGGCCGGACCCGCGTAGTAAATCGGATGATCTTTGATGTACTGCGGCAGcc           >  1:2243305/1‑71 (MQ=255)
                                                           gcgtAACCTTCCGGCGTTTTGGCCGGACCCGCGTAGTAAATCGGATGATCTTTGATGTACTGCGGCAGccc          <  1:2595502/68‑1 (MQ=255)
                                                              tAACCTTCCGGCGTTTTGGCCGGACCCGCGTAGTAAATCGGATGATCTTTGATGTACTGCGGCAGCCCtt        <  1:2643759/70‑1 (MQ=255)
                                                                aCCTTCCGGCGTTTTGGCCGGACCCGCGTAGTAAATCGGATGATCTTTGATGTa                      >  1:3233718/1‑54 (MQ=255)
                                                                 ccTTCCGGCGTTTTGGCCGGACCCGCGTAGTAAATCGGATGATCTTTGATGTACTGCGGCAGCCCTTCa      <  1:2420601/69‑1 (MQ=255)
                                                                 ccTTCCGGCGTTTTGGCCGGACCCGCGTAGTAAATCGGATGATCTTTGATGTACTGCGGCAGCCCTTCAcc    >  1:143543/1‑71 (MQ=255)
                                                                   ttCCGGCGTTTTGGCCGGACCCGCGTAGTAAATCGGATGATCTTTGATGTACTGCGGCAGCCCTTc       <  1:2228676/66‑1 (MQ=255)
                                                                    tCCGGCGTTTTGGCCGGACCCGCGTAGTAAATCGGATGATCTTTGATGTACTGCGCCAGCCCTTCACCGt  >  1:488754/1‑70 (MQ=255)
                                                                    |                                                                     
GCAGTTGATCGACATAAGAATCCATCCGTCCGGCGGTCGTTGGGCCAAGAGAACCGGAGGCATAACCTTCCGGCGTTTTGGCCGGACCCGCGTAGTAAATCGGATGATCTTTGATGTACTGCGGCAGCCCTTCACCGT  >  minE/1014715‑1014852

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: