| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,015,010 | C→G | 15.7% | A353A (GCG→GCC) | fumA ← | aerobic Class I fumarate hydratase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,015,010 | 0 | C | G | 15.7% | 118.5 / 14.3 | 51 | A353A (GCG→GCC) | fumA | aerobic Class I fumarate hydratase |
| Reads supporting (aligned to +/- strand): ref base C (22/21); new base G (3/5); total (25/26) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.03e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.71e-01 | |||||||||||
CTGCGACAACTGTGCGAGGATCTCTTTCATCGGACGGTTAAGGTCAACGCGCACCGCTTCGCCTTCTCCCGCTTTGCGCAGCTCTTCCGGGATATATTTGCCTGGATTATGTTCCAGTTTTTCGATCCAGATCCCCTGA > minE/1014941‑1015079 | cTGCGACAACTGTGCGAGGATCTCTTTCATCGGACGGTTAAGGTCAACGCGCACCGCTTCGCCTTCTCCCg > 1:2788084/1‑71 (MQ=255) tGCGACAACTGTGCGAGGATCTCTTTCATCGGACGGTTAAGGGCAACGCGCACCGCTTCGCCTTCTccc < 1:3572653/69‑1 (MQ=255) cGACAACTGTGCGAGGATCTCTTTCATCGGACGGTTAAGGTCAACGCGCACCGCTTCGCCTTCTCCCGCtt < 1:493445/71‑1 (MQ=255) cGACAACTGTGCGAGGATCTCTTTCATCGGACGGTTAAGGTCAACGCGCACCGCTTCGCCTTCTCCCGCtt < 1:2638523/71‑1 (MQ=255) cGACAACTGTGCGAGGATCTCTTTCATCGGACGGTTAAGGTCAACGCGCACCGCTTCGCCTTCTCCCGCt < 1:2675081/70‑1 (MQ=255) cAACTGTGCGAGGATCTCTTTCATCGGACGGTTAAGGTCAACGCGCACCGCTTCGCCTTCTCCCGCTTTgc < 1:3780558/71‑1 (MQ=255) aaCTGTGCGAGGATCTCTTTCATCGGACGGTTAAGGTCAACGCGCACCGCTTCGCCTTCTCCCGCTTTgcg > 1:387096/1‑71 (MQ=255) ggCGAGGATCTCTTTCATCGTGCGGTTAAGGTCAACTTTCACCGCTTCGCCTTCACCGGCCTGGCGCAgt > 1:2816912/2‑69 (MQ=255) ggATCTCTTTCATCGGACGGTTAAGGTCAACGCGCACCGCTTCGCCTTCTCCCGCTTTGCGCAGCTCTTcc < 1:3810923/71‑1 (MQ=255) ggATCTCTTTCATCGGACGGTTAAGGTCAACGCGCACCGCTTCGCCTTCTCACGCTTTGCGCAGCTCTTcc > 1:839054/1‑71 (MQ=255) aTCTCTTTCATCGGGCGGTTAAGGTCAACTTTCACCGCTTCGCCTTCACCGGCCTGGCGCAGTTCtt < 1:2651079/67‑1 (MQ=255) aTCTCTTTCATCGGACGGTTAAGGTCAACGCGCACCGCTTCGCCTTCTCCCGc < 1:2951143/53‑1 (MQ=255) ctctTTCATCGGACGGTTAAGGTCAACGCGCACCGCTTCGCCTTCTCCCGCTTTGCGCAGCTCTTCCGGGa > 1:2393713/1‑71 (MQ=255) ctctTTCATCGGACGGTTAAGGTCAACGCGCACCGCTTCGCCTTCTCCCGCTTTGCGCAGCTCTTCCGGGa > 1:42080/1‑71 (MQ=255) tttCATCGGACGGTTAAGGTCAACGCCCACCGCTTCGCCTTCTCCCGCTTTGCGCAGCTCTTCCGGGa < 1:3657820/68‑1 (MQ=255) cATCGGACGGTTAAGGTCAACGCGCACCGCTTCGCCTTCTCCCGCTTTGCGCAGCTCTTCCGGGatatat < 1:2364981/70‑1 (MQ=255) cATCGGACGGTTAAGGTCAACGCGCACCGCTTCGCCTTCTCCCGCTTTGCGCAGCTCTTCCGGGa < 1:2362131/65‑1 (MQ=255) cGGACGGTTAAGGTCAACGCGCACCGCTTCGCCTTCTCCCGCTTTGCGCAGCTCTTCCGGGATATATTTGc > 1:1917220/1‑71 (MQ=255) ggACGGTTAAGGTCAACGCGCACCGCTTCGCCTTCTCCCGCTTTGCGCAGCTCTTCCGGGATATATTTGcc > 1:1986686/1‑71 (MQ=255) ggACGGTTAAGGTCAACGCGCACCGCTTCGCCTTCTCCCGCTTTGCGCAGCTCTTCCGGGATATATTTGc < 1:150915/70‑1 (MQ=255) aCGGTTAAGGTCAACGCGCACCGCTTCGCCTTCTCCCGCTTTGCGCAGCTCTTCCGGGATATATTTGCCTg < 1:1512345/71‑1 (MQ=255) gTTAAGGTCAACTTTCACCGCTTCGCCTTCACCGGCCTGGCGCAGTTCTTGTGGAATGTACTGGCCTgggt < 1:1731115/71‑3 (MQ=255) tAAGGTCAACGCGCACCGCTTCGCCTTCTCCCGCTTTGCGCAGCTCTTCCGGGatatat > 1:3020890/1‑59 (MQ=255) tAAGGTCAACGCGCACCGCTTCGCCTTCTCCCGCTTTGCGCAGCTCTTCCGGGATATATTTGCCTg > 1:1941656/1‑66 (MQ=255) aaGGTCAACGCGCACCGCTTCGCCTTCTCCCGCTTTGCGCAGCTCTTCCGGGATATAttt < 1:3523031/60‑1 (MQ=255) aaGGTCAACGCGCACCGCTTCGCCTTCTCCCGCTTTGCGCAGCTCTTCCGGGATATATTTGCCTGGATTAt > 1:1254363/1‑71 (MQ=255) aGGTCAACGCGCACCGCTTCGCCTTCTCCCGCTTTGCGCAGCTCTTCCGGGATATATTTGCCTGGATTATg > 1:16646/1‑71 (MQ=255) cAACGCGCACCGCTTCGCCTTCTCCCGCTTTGCGCAGCTCTTCCGGGATATATTTGCCTGGATTATGtt > 1:2462200/1‑69 (MQ=255) aaCGCGCACCGCTTCGCCTTCTCCCGCTTTGCGCAGct > 1:159842/1‑38 (MQ=255) aaCGCGCACCGCTTCGCCTTCTCCCGCTTTGCGCAGCTCTTCCGGGATATATTTGCCTGGATTATGTTc > 1:2295325/1‑69 (MQ=255) tttcACCGCTTCGCCTTCACCGGCCTGGCGCAGTTCTTGTGGAATGTACTGGCCTGGGTTGTGTTCCAGtt > 1:3721710/4‑71 (MQ=255) ttcACCGCTTCGCCTTCACCGGCCTGGCGCAGTTCTTGTGGAATGTACTGGCCTGGGTTGTGTTCCAGttt > 1:787777/3‑71 (MQ=255) cgcACCGCTTCGGCTTCTGCCGCTTTTCGCAGCTCTTCCGGGATATATTTGCCTGGATTTTGTTCCAGt < 1:2163730/69‑1 (MQ=255) tcACCGCTTCGCCTTCACCGGCCTGGCGCAGTTCTTGTGGAATGTACTGGCCTGGGTTGTGTTCCAGttt < 1:47357/69‑1 (MQ=255) cACCGCTTCGCCTTCTCCCGCTTTGCGCAGCTCTTCCGGGATATATTTGCCTGGATTATGTTCCAGttttt > 1:2314172/1‑71 (MQ=255) aCCGCTTCGCCTTCTCCCGCTTTGCGCAGCTCTTCCGGGATATATTTGCCTGGATTATGTTCCAGTTTTTc > 1:3517774/1‑71 (MQ=255) ccGCTTCGCCTTCACCGGCCTGGCGCAGTTCTTGTGGAATGTACTGGCCTGGGTTGTGTTCCAGTTTTTCg < 1:2290998/71‑1 (MQ=255) cGCTTCGCCTTCTCCCGCTTTGCGCAGCTCTTCCGGGATATATTTGCCTGGATTATGTTCCAGTTTTTCGa < 1:692116/71‑1 (MQ=255) gCTTCGCCTTCTCCCGCTTTGCGCAGCTCTTCCGGGATATAtt < 1:1404141/43‑1 (MQ=255) cTTCGCCTTCTCCCGCTTTGCGCAGCTCTTCCGGGATATATTTGCCTGGATTATGTTCCAGTTTTTCGATc < 1:437175/71‑1 (MQ=255) cTTCGCCTTCACCGGCCTGGCGCAGTTCTTGTGGAATGTACTGGCCTGGGTTGTGTTCCAGttt < 1:1406777/64‑1 (MQ=255) cGCCTTCTCCCGCTTTGCGCAGCTCTTCCGGGATATATTTGCCTGGATTATGTTCCAGTTTTTCGATCCa < 1:1165647/70‑1 (MQ=255) cGCCTTCTCCCGCTTTGCCCAGCTCTTCCGGGATATATTTGCCTGGATTATGTTCCAGTTTTTCGATCCa < 1:2988440/70‑1 (MQ=255) ccTTCTCCCGCTTTGCGCAGCTCTTCCGGGATATATTTGCCTGGATTATGTTCCAGt < 1:108948/57‑1 (MQ=255) cTTCTCCCGCTTTGCGCAGCTCTTCCGGGATATATTTGCCTGGATTATGTTCCAGTTTTTCGATCCAGATc > 1:1594628/1‑71 (MQ=255) cTTCTCCCGCTTTGCGCAGCTCTTCCGGGATATATTTGCCTGGATTATGTTCCAGTTTTTCGATCCAGATc > 1:1125790/1‑71 (MQ=255) ttCTCCCGCTTTGCGCAGCTCTTCCGGGATATAttt < 1:1315451/36‑1 (MQ=255) ttCTCCCGCTTTGCGCAGCTCTTCCGGGATATATTTGCCTTGATTAt < 1:2380/47‑1 (MQ=255) tctcCCGCTTTGCGCAGCTCTTCCGGGATATATTTGCCTGGATTATGt > 1:1497999/1‑48 (MQ=255) ctcCCGCTTTGCGCAGCTCTTCCGGGATATATTTGCCTGGATTATGTTCCAGTTTTTCGATCCAGATc > 1:3728427/1‑68 (MQ=255) tcCCGCTTTGCGCAGCTCTTCCGGGATATATTTGCCTGGATTATGTTCCAGTTTTTCGATCCAGAt > 1:1125932/1‑66 (MQ=255) tcCCGCTTTGCGCAGCTCTTCCGGGATATATTTGCCTGGATTATGTTCCAGTTTTTCGATCCAGAt > 1:1121387/1‑66 (MQ=255) ccGCTTTGCGCAGCTCTTCCGGGATATATTTGCCTGGATTATGTTCCAGtt < 1:2576907/51‑1 (MQ=255) ccGCTTTGCGCAGCTCTTCCGGGATATATTTGCCTGGATTATGTTCCAGTTTTTCGATCCAGATCCCCTg < 1:630993/70‑1 (MQ=255) ccGCTTTGCGCAGCTCTTCCGGGATATATTTGCCTGGATTATGTTCCAGTTTTTCGATCCAGATCCCCTGa < 1:1215642/71‑1 (MQ=255) | CTGCGACAACTGTGCGAGGATCTCTTTCATCGGACGGTTAAGGTCAACGCGCACCGCTTCGCCTTCTCCCGCTTTGCGCAGCTCTTCCGGGATATATTTGCCTGGATTATGTTCCAGTTTTTCGATCCAGATCCCCTGA > minE/1014941‑1015079 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |