| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 205642 | NA (NA) | 12 (0.220) | 8/96 | NT | NA | noncoding (1059/2904 nt) | rrlH | 23S ribosomal RNA |
| ? | minE | = 205661 | NA (NA) | noncoding (1078/2904 nt) | rrlH | 23S ribosomal RNA | |||||
CAGACCGCCAGCTAAGGTCCCAAAGTCATGGTTAAGTGGGAAACGATGTGGGAAGGCCCAGACAGCCAGGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/205570‑205642‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgATGGCTGCTTCTAAGCCAACATCCTGGCTGTCTGGGCCTTCCCACATCGTTTCCCACTTAACCATGACTT < minE/205661‑205592 CAGACCGCCAGCTAAGGTGCCAAAGTCATGGTTAAGTGGGAAACGATGTGGGAAGGCCCAGACAGCCAGGA < 1:554472/71‑1CAGACCGCCAGCTAAGGTCCCAAAGTCATGGTTAAGTGGGAAACGATGTGGGAAGGCCCAGACATCCAGGA < 1:482505/71‑1CAGACCGCCAGCTAAGGTCCCAAAGTCATGGTTAAGTGGGAAACGATGTGGGAAGGCCCAGACAGCCAGGA > 1:385842/1‑71CAGACCGCCAGCTAAGGTCCCAAAGTCATGGTTAAGTGGGAAACGATGTGGGAAGGCCCAGACAGCCAGGA < 1:2893399/71‑1CAGACCGCCAGCTAAGGTCCCAAAGTCATGGTTAAGTGGGAAACGATGTGGGAAGGCCCAGACAGCCAGGA > 1:2477628/1‑71CAGACCGCCAGCTAAGGTCCCAAAGTCATGGTTAAGTGGGAAACGATGTGGGAAGGCCCAGACAGCCAGGA > 1:1847855/1‑71 AGACCGCCAGCTAAGGTCCCAAAGTCATGGTTAAGTGGGAAACGATGTGTGAAGGCCCAGACAGCCAGGA > 1:1424150/1‑70 AGACCGCCAGCTAAGGTCCCAAAGTCATGGTTAAGTGGGAAACGATGTGGGAAGGCCCAGACAGCCAGGAT > 1:999322/1‑71 AGACCGCCAGCTAAGGTCCCAAAGTCATGGTTAAGTGGGAAACGATGTGGGAAGGCCCAGACAGCCAGGAT > 1:1203421/1‑71 AGACCGCCAGCTAAGGTCCCAAAGTCATGGTTAAGTGGGAAACGATGTGGGAAGGCCCAGACAGCCAGGAT > 1:910414/1‑71 AGACCGCCAGCTAAGGTCCCAAAGTCATGGTTAAGTGGGAAACGATGTGGGAAGGCCCAGACAGCCAGGAT < 1:672923/71‑1 AGACCGCCAGCTAAGGTCCCAAAGTCATGGTTAAGTGGGAAACGATGTGGGAAGGCCCAGACAGCCAGGAT > 1:437973/1‑71 AGACCGCCAGCTAAGGTCCCAAAGTCATGGTTAAGTGGGAAACGATGTGGGAAGGCCCAGACAGCCAGGAT > 1:1606414/1‑71 AGACCGCCAGCTAAGGTCCCAAAGTCATGGTTAAGTGGGAAACGATGTGGGAAGGCCCAGACAGCCAGGA > 1:2284247/1‑70 GACCGCCAGCTAAGGTCCCAAAGTCATGGTTAAGTGGGAAACGATGTGGGAAGGCCCAGACAGCCAGGATG > 1:2810151/1‑71 GACCGCCAGCTAAGGTCCCAAAGTCATGGTTAAGTGGGAAACGATGTGGGAAGGCCCAGACAGCCAGGATG < 1:2929133/71‑1 GACCGCCAGCTAAGGTCCCAAAGTCATGGTTAAGTGGGAAACGATGTGGGAAGGCCCAGACAGCCAGGATG > 1:1636421/1‑71 GTCCCAAAGTCATGGTTAAGTGGGAAACGATGTGGGAAGGCCCAGACAGCCAGGATGTTGGCTGCTTCTAA < 1:1176673/71‑1 AAAGTCATGGTTAAGTGGGAAACGATGTGGGAAGGCCCAGACAGCCAGGA > 1:2022426/1‑50 AGTCATGGTTAAGTGGGAAACGATGTGGGAAGGCCCAGACAGCCAGGA > 1:1283962/1‑48 AGTCATGGTTAAGTGGGAAACGATGTGGGAAGGCCCAGACAGCCAGGA > 1:1286446/1‑48 AGTCATGGTTAAGTGGGAAACGATGTGGGAAGGCCCAGACAGCCAGGA > 1:3264464/1‑48 AGTCATGGTTAAGTGGGAAACGATGTGGGAAGGCCCAGACAGCCAGGA > 1:2924828/1‑48 AGTCATGGTTAAGTGGGAAACGATGTGGGAAGGCCCAGACAGCCAGGA > 1:1599688/1‑48 ATGGTTAAGTGGGAAACGATGTGGGAAGGCCCAGACAGCCAGGATGATGGCTGCTTCTAAGCCAACATCC < 1:1366064/70‑1 ATGGTTAAGTGGGAAACGATGTGGGAAGGCCCAGACAGCCAGGATGATGGCTGCTTCTAAGCCAACATCC < 1:761710/70‑1 ATGGTTAAGTGGGAAACGATGTGGGAAGGCCCAGACAGCCAGGATGATGGCTGCTTCTAAGCCAACATCC < 1:2561484/70‑1 ATGGTTAAGTGGGAAACGATGTGGGAAGGCCCAGACAGCCAGGATGATGGCTGCTTCTAAGCCAACATCC < 1:696065/70‑1 GGTTAAGTGGGAAACGATGTGGGAAGGCCCAGACAGCCAGGATGATGGCTGCTTCTAAGCCAACATCCTG > 1:2969657/1‑70 GTTAAGTGGGAAACGATGTGGGAAGGCCCAGACAGCCAGGAT < 1:930996/42‑1 TGGGAAACGATGTGGGAAGGCCCAGACAGCCAGGATGATGGCTGATTCTAAGCCAA < 1:1300644/56‑1 GGGAAACGATGTGGGAAGGCCCAGACAGCCAGGATG > 1:1060063/1‑36 GGGAAACGATGTGGGAAGGCCCAGACAGCCAGGATG > 1:26046/1‑36 GGGAAACGATGTGGGAAGGCCCAGACAGCCAGGAT > 1:989281/1‑35 GGAAACGATGTGGGAAGGCCCAGACAGCCAGGATGATGGCTGCTTCTAAG < 1:1394015/50‑1 AAACGATGTGGGAAGGCCCAGACAGCCAGGATGATGGCTGCTTCTAAGCC > 1:821451/1‑50 ATGTGGGAAGGCCCAGACAGCCAGGATGTTGGCTGCTTCTA > 1:2203461/1‑41 ATGTGGGAAGGCCCAGACAGCCAGGATGTTGGCTGCTTCTA > 1:2384663/1‑41 TGGGAAGGCCCAGACAGCCAGGATGATGGCTGCTTCTAAGC < 1:770501/41‑1 ATGATGGCTGCTTCTATGCCAACATCCTGGCTGTCTGGGCCTTCCCACATCGTTTCCCACTTAACCATGgc > 1:1450727/1‑69 ATGATGGCTGCTTCTAAGCCAACATCCTGGCTGTCTGGGCCTTCCCACATCGTTTCCCACTTAACCATGAC < 1:636280/71‑1 ATGATGGCTGCTTCTAAGCCAACATCCTGGCTGTCTGGGCCTTCCCACATCGTTTCCCACTTAACCATGAC < 1:1953471/71‑1 ATGATGGCTGCTTCTAAGCCAACATCCTGGCTGTCTGGGCCTTCCCACATCGTTTCCCACTTAACCATGAC < 1:1716306/71‑1 ATGATGGCTGCTTCTAAGCCAACATCCTGGCTGTCTGGGCCTTC > 1:749695/1‑44 ATGATGGCTGCTTCTAAGCCAACATCCTGGCTGTCT‑‑GCCTTCCCACATCGTTTCCCACTTAACCATGACTT < 1:1324079/71‑1 TGATGGCTGCTTCTGAGCCAACATCCTGGCTGTCTGGGCCTTCCCACATCGTTTCCCACTTAACCATGACT > 1:458665/1‑71 TGATGGCTGCTTCTAAGCCAACATCCTGGCTGTCTGGGCCTTCCCACATCGTTTCCCACTTAACCATGACT < 1:65493/71‑1 TGATGGCTGCTTCTAAGCCAACATCCTGGCTGTCTGGGCCTTCCCACATCGTTTCCCACTTAACCATGACT > 1:3337187/1‑71 TGATGGCTGCTTCTAAGCCAACATCCTGGCTGTCTGGGCCTTCCCACATCGTTTCCCACTTAACCATGACT > 1:2827372/1‑71 TGATGGCTGCTTCTAAGCCAACATCCTGGCTGTCTGGGCCTTCCCACATCGTTTCCCACTTAACCATGACT > 1:2334847/1‑71 TGATGGCTGCTTCTAAGCCAACATCCAGGCTGTCTGGGCCTTCCCACATCG > 1:2245098/1‑51 GATGGCTGCTTCTAAGCCAACATCCTGGCTGTCTGGGCCTTCCCACATCGTTTCCCACTTAACCATGACTT > 1:3721914/1‑71 GATGGCTGCTTCTAAGCCAACATCCTGGCTGTCTGGGCCTTCCCACATCGTTTCCCACTTAACCATGACTT > 1:3538416/1‑71 GATGGCTGCTTCTAAGCCAACATCCTGGCTGTCTGGGCCTTCCCACATCGTTTCCCACTTAACCATGACTT > 1:2821362/1‑71 GATGGCTGCTTCTAAGCCAACATCCTGGCTGTCTGGGCCTTCCCACATCGTTTCCCACTTAACCATGACT < 1:2237231/70‑1 CAGACCGCCAGCTAAGGTCCCAAAGTCATGGTTAAGTGGGAAACGATGTGGGAAGGCCCAGACAGCCAGGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/205570‑205642‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgATGGCTGCTTCTAAGCCAACATCCTGGCTGTCTGGGCCTTCCCACATCGTTTCCCACTTAACCATGACTT < minE/205661‑205592 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |