New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	minE	688504 =	58 (0.980)	4 (0.080)	3/90	NT	7.3%	intergenic (‑93/‑334)	serT/hyaA	tRNA‑Ser/hydrogenase 1, small subunit
	?	minE	688531 =	50 (0.960)					intergenic (‑120/‑307)	serT/hyaA	tRNA‑Ser/hydrogenase 1, small subunit

ATGTTTAGCCGGTTGCTAAACGAGTAAAAGAGAAGGAATTCATGGTGATGAAATGATCAATCTGCTGTTATTTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  minE/688578‑688504 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atttcaTCACCATGAATTCCTTCTCTTTTACTCGTTTAGCAACCGGCTAAACATCCCCACCGCCCGGCCAAAAGA  >  minE/688531‑688599                                                                                                                                                  ATGTTTAGCCGGTTGCTAAACGAGTAAAAGAGAAGGAATTCATGGTGATGAAATGATCAATCTGCTGTTAT                                                                           <  1:2399893/71‑1                               AGAAGGAATTCATGGTGATGAAATGATCAATCTGCTGTTATTTCA                                                                       >  1:1393321/1‑45                               AGAAGGAATTCATGGTGATGAAATGATCAATCTGCTGTTATTTCA                                                                       >  1:260134/1‑45                                               GATGAAATGATCAATCTGCTGTTATTTCATCACCATGAATTCCTTCTCTTTTACTCGTTTAGCAACCGGC                              >  1:511719/1‑70                                                  GAAATGATCAATCTGCTGTTATTTCATCACCATGAATTCCTTCTCTTTTACTCGTTTAGCAAC                                  <  1:3068899/63‑1                                                       GATCAATCTGCTGTTATTTCGTCACCATGAATTCCTTCT                                                     >  1:3675763/1‑39                                                       GATCAATCTGCTGTTATTTCATCACCATGAATTCCTTCT                                                     >  1:1581566/1‑39                                                                      ATTTCATCACCATGAATTCCTTCTCTTTTACTCGTTTAGCAACCGGCTAAACATCCCCACCGCCCGGCCAA      <  1:2036876/71‑1                                                                      ATTTCATCAACATGAATTCCTTCTCTTTTACTCGTTTAGCAACCGGCTAAACATCCCCACCGCCCGGCCAA      <  1:587106/71‑1                                                                       TTTCATCACCATGAATTCCTTCTCTTTTACTCGTTTAGCAACCGGCTA                            <  1:2585873/48‑1                                                                         TCATCACCATGAATTCCTTCTCTTTTACTCGTTTAGCAACCGGCTAA                           >  1:2842515/1‑47                                                                           ATCACCATGAATTCCTTCTCTTTTACTCGTTTAGCAACCGGCTAAACATCCCCACCGCCCGGCCAAAAGA  >  1:1153258/1‑70                                                                           ATCACCATGAATTCCTTCTCTTTTACTCGTTTAGCAACCGGCTAAACATCCCCACCGCCCGGCCAAAAGA  >  1:2150891/1‑70                                                                                                                                                  ATGTTTAGCCGGTTGCTAAACGAGTAAAAGAGAAGGAATTCATGGTGATGAAATGATCAATCTGCTGTTATTTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  minE/688578‑688504 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atttcaTCACCATGAATTCCTTCTCTTTTACTCGTTTAGCAACCGGCTAAACATCCCCACCGCCCGGCCAAAAGA  >  minE/688531‑688599

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.