New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	minE	715224 =	56 (0.950)	8 (0.150)	3/94	NT	10.9%	coding (931/1209 nt)	mdtH	predicted drug efflux system
	?	minE	715252 =	79 (1.450)					coding (903/1209 nt)	mdtH	predicted drug efflux system

AAGCATGATGCCGGTGGGCATGGTCAGCGGCCTGCAACAACTTTTCACCCTGATTTGTCTGTTTTATATCGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  minE/715297‑715224 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggtGAAAAGTTGTTGCAGGCCGCTGACCATGCCCACCGGCATCATGCTTAATGACATTATCAACAGCCCAGC  >  minE/715252‑715320                                                                                                                                                 AAGCATGATGCCGGTGGGCATGGTCAGGGGCCTGCAACAACTTTTCACCCTGATTTGTCTGTTTTATATCG                                                                          >  1:1000665/1‑71                                          TTTTCACCCTGATTTGTCTGTTTTATATCGGGTGAAAAGTTGTTGCAGGCCGCTGACCAT                                            <  1:2905655/60‑1                                          TTTTCACCCTGATTTGTCTGTTTTATATCGGGTGAAAAGTTGTTGCAGGCCGCTGACCAT                                            <  1:3579296/60‑1                                          TTTTCACCCTGATTTGTCTGTTTTATATCGGGTGAAAAGTTGTTGCAGGCCGCTGACCAT                                            <  1:3724410/60‑1                                            TTCACCCTGATTTGTCTGTTTTATATCGGGTGAAAAGTTGTTGCAGGCCGCTGACCATGC                                          >  1:1354220/1‑60                                            TTCACCCTGATTTGTCTGTTTTATATCGGGTGAAAAGTTGTTGCAGGCCGCTGACCATGC                                          >  1:725300/1‑60                                            TTCACCCTGATTTGTCTGTTTTATATCGGGTGAAAAGTTGTTGCAGGCCGCTGACCATGC                                          >  1:757487/1‑60                                            TTCACCCTGATTTGTCTGTTTTATATCGGGTGAAAAGTTGTTGCAGGCCGCTGACCATG                                           >  1:604424/1‑59                                               ACCCTGATTTGTCTGTTTTATATCGGGTGAAAAGTTGTTGCAGGCCGCTGACCATGC                                          >  1:3400028/1‑57                                                                        GGTGAAAAGTTGTTGCAGGCCGCTGACCATGCCCACCGGCATCATGCTTAATGACATTATCAACAGCCCAG   >  1:2177511/1‑71                                                                        GGTGAAAAGTTGTTGCAGGCCGCTGACCATGCCCACCGGCATCATGCTTAATGACATTATCAACAGCCCAG   >  1:3091764/1‑71                                                                         GTGAAAAGTTGTTGCAGGCCGCTGACCATGCCCACCGGCATCATGCTTAATGACATTATCAACAGCCCAGC  <  1:363412/71‑1                                                                          TGAAAAGTTGTTGCAGGCCGCTGACCATGCCCACCGGCATCATGCTTAATGACATTATCAACAGCCCAGC  >  1:1370090/1‑70                                                                                                                                                 AAGCATGATGCCGGTGGGCATGGTCAGCGGCCTGCAACAACTTTTCACCCTGATTTGTCTGTTTTATATCGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  minE/715297‑715224 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggtGAAAAGTTGTTGCAGGCCGCTGACCATGCCCACCGGCATCATGCTTAATGACATTATCAACAGCCCAGC  >  minE/715252‑715320

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.