| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | 808136 = | 50 (0.850) | 6 (0.120) | 3/90 | NT | 12.8% | coding (31/2868 nt) | ycgV | predicted adhesin |
| ? | minE | 808171 = | 38 (0.730) | intergenic (‑5/+764) | ycgV/ychF | predicted adhesin/predicted GTP‑binding protein | |||||
CAAAATCCATAGACCCATAGTCTGGGTACTATATAGGAGTGGTATGGGCATCAAACAACACAATGGGAATACCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < minE/808209‑808136‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ataccaCTCCTATATAGTACCCAGACTATGGGTCTATGGATTTTGTCATTTTGTTTAAATCAATGAATAATATCC > minE/808171‑808239 CAAAATCCATAGACCCATAGTCTGGGTACTATATAGGAGTGGTATGGGCATCAAACAACACAATGGGAATA > 1:602433/1‑71 TCTGGGTACTATATAGGAGTGGTATGGGCATCAAACAACACAATGGGAATACCA < 1:140705/54‑1 TCTGGGTACTATATAGGAGTGGTATGGGCATCAAACAACACAATGGGAATACCA < 1:716730/54‑1 AGTGGTATGGGCATCAAACAACACAATGGGAATACCACTCCTATATAGTACCCAGAC < 1:3303633/57‑1 TGGTATGGGCATCAAACAACACAATGGGAATACCACTCCTATATAGTACCCAGACTATGGGTCTATGGATT < 1:3589764/71‑1 CAACACAATGGGAATACCACTCCTATATAGTACCCAGACTATGGG > 1:1001385/1‑45 CAACACAATGGGAATACCACTCCTATATAGTACCCAGACTATGGG > 1:3591973/1‑45 CAACACAATGGGAATACCACTCCTATATAGTACCCAGACTATGGG > 1:630222/1‑45 CAACACAATGGGAATACCACTCCTATATAGTACCCAGACTATGGG > 1:1439794/1‑45 ATACCACTCCTATATAGTACCCAGACTATGGGTCTATGGATTTTGTCATTTTGTTTAAATCA < 1:2188410/62‑1 ATACCACTCCTATATAGTACCCAGACTATGGGTCTATGGATTTTGTCATTTTGTTTAAATCA < 1:3428755/62‑1 TACCACTCCTATATAGTACCCAGACTATGGGTCTATGGATTTTGTCATTTTGTTTAAATCAATGAATAATA < 1:2238109/71‑1 TACCACTCCTATATAGTACCCAGACTATGGGTCTATGGATTTTGTCATTTTGTTTAAATCAATGAATAATA < 1:2247898/71‑1 CCACTCCTATATAGTACCCAGACTATGGGTCTATGGATTTTGTCATTTTGTTTAAA < 1:3591698/56‑1 CACTCCTATATAGTACCCAGACTATGGGTCTATGGATTTTGTCATTTTGTTTAAATCAATGATTAATATCC > 1:726352/1‑71 CACTCCTATATAGTACCCAGACTATGGGTCTATGGATTTTGTCATTTTGTTTAAATCAATGAATAATATC > 1:2936553/1‑70 CACTCCTATATAGTACCCAGACTATGGGTCTATGGATTTTGTCATTTTGTTTAA < 1:1477599/54‑1 CAAAATCCATAGACCCATAGTCTGGGTACTATATAGGAGTGGTATGGGCATCAAACAACACAATGGGAATACCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < minE/808209‑808136‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ataccaCTCCTATATAGTACCCAGACTATGGGTCTATGGATTTTGTCATTTTGTTTAAATCAATGAATAATATCC > minE/808171‑808239 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |