| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 1094415 | 42 (0.710) | 6 (0.110) | 4/94 | NT | 12.5% | coding (1962/3057 nt) | ydiJ | predicted FAD‑linked oxidoreductase |
| ? | minE | = 1094431 | 45 (0.830) | coding (1946/3057 nt) | ydiJ | predicted FAD‑linked oxidoreductase | |||||
ACGCTTTACAGGCCAGACAGCCCGACATCGCCTCTTTGACTTCGTGTGAGAAGTCATATTCGCCTTTATTCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/1094342‑1094415‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcaCGCGCAATAGCTGGCATGCGAATAAAGGCGAATATGACTTCTCACACGAAGTCAAAGAGGCGATGTCGGG < minE/1094431‑1094362 ACGCTTTACAGGCCAGACAGCCCGACATCGCCTCTTTGACTTCGTGTGAGAAGTCATATTCGCCTTTATTC > 1:91530/1‑71 CGCTTTACAGGCCAGACAGCCCGACATCGCCTCTTTGACTTCGTGTGAGAAGTCATATTCGCCTTTATTCG > 1:3713745/1‑71 CGCTTTACAGGCCAGACAGCCCGACATCGCCTCTTTGACTTCGTGTGAGAAGTCATATTCGCCTTTATTCG > 1:3521210/1‑71 CGCTTTACAGGCCAGACAGCCCGACATCGCCTCTTTGACTTCGTGTGAGAAGTCATATTCGCCTTTATTCG < 1:655238/71‑1 CGCTTTACAGGCCAGACAGCCCGACATCGCCTCTTTGACTTCGTGTGAGAAGTCATATTCGCCTTTATTCG < 1:1197071/71‑1 CGCTTTACAGGCCAGACAGCCCGACATCGCCTCTTTGACTTCGTGTGAGAAGTCATATTCGCCTTTATTCG < 1:3352960/71‑1 CTTTACAGGCCAGACAGCCCGACATCGCCTCTTTGACTTCGTGTGAGAAGTCATATTCGCCTTTATTCGCA > 1:2502071/1‑71 CGACATCGCCTCTTTGACTTCGTGTGAGAAGTCATATTCGCCTTTATTCGCACGCGCAATAGCTGGCATGC < 1:379249/71‑1 CGACATCGCCTCTTTGACTTCGTGTGAGAAGTCATATTCGCCTTTATTCGCACGCGCAATAGCTGGCATGC > 1:344909/1‑71 CGACATCGCCTCTTTGACTTCGTGTGAGAAGTCATATTCGCCTTTATTCGCACGCGCAATAGCTGGCATGC < 1:3443979/71‑1 GCCTCTTTGACTTCGTGTGAGAAGTCATATTCGCCTTTATTCGCACGCGCAATAGCTGGCATGCGAATAAA < 1:921074/71‑1 CTCTTTGACTTCGTGTGAGAAGTCATATTCGCCTTTATTCG < 1:2637308/41‑1 GTCATATTCGCCTTTATTCGCACGCGCAATAGCTGGC < 1:1923417/37‑1 GTCATATTCGCCTTTATTCGCACGCGCAATAGCTGGC < 1:3155760/37‑1 CGCACGCGCAATAGCTGGCATGCGAATAAAGGCGAATATGACTTCTCACACGAAGTCAAAGAGGCGATGTC > 1:3125045/1‑71 CGCACGCGCAATAGCTGGCATGCGAATAAAGGCGAATATGACTTCTCACACGAAGTCAAAGAGGCGATGTC < 1:1981963/71‑1 GCACGCGCAATAGCTGGCATGCGAATAAAGGCGAATATGACTTCTCACACGAAGTCAAAGAGGCGATGTCG > 1:3119580/1‑71 GCACGCGCAATAGCTGGCATGCGAATAAAGGCGAATATGACTTCTCACACGAAGTCAAAGAGGCGATGTCG < 1:3086233/71‑1 GCACGCGCAATAGCTGGCATGCGAATAAAGGCGAATATGACTTCTCACACGAAGTCAAAGAGGCGATGTCG > 1:1581386/1‑71 GCACGCGCAATAGCTGGCATGCGAATAAAGGCGAATATGACTTCTCACACGAAGT < 1:1783304/55‑1 GCACGCGCAATAGCTGGCATGCGAATAAAGGCGAATATGACTTCTCACACGAAGT < 1:411353/55‑1 GCACGCGCAATAGCTGGCATGCGAATAAAGGCGAATATGACTTCTCACACGAAGT < 1:442134/55‑1 GCACGCGCAATAGCTGGCATGCGAATAAAGGCGAATATGACTTCTCACACGAAGT < 1:593583/55‑1 GCACGCGCAATAGCTGGCATGCGAATAAAGGCGAATATGACTTCTCACACGAAGT < 1:62303/55‑1 GCACGCGCAATAGCTGCCATGCGAATAAAGGCGAATATGACTTCTCACACGAAGT < 1:498957/55‑1 CACGCGCAATAGCTGGCATGCGAATAAAGGCGAATATGACTTCTCACACG < 1:3431711/50‑1 CACGCGCAATAGCTGGCATGCGAATAAAGGCGAATATGACTTCTCACACG < 1:803565/50‑1 CACGCGCAATAGCTGGCATGCGAATAAAGGCGAATATGACTTCTCACACG < 1:2029758/50‑1 ACGCGCAATAGCTGGCATGCGAATAAAGGCGAATATGACTTCTCACACGAAGTCAAAGAGGCGATGTCGGG > 1:1211555/1‑71 ACGCGCAATAGCTGGCATGCGAATAAAGGCGAATATGACTTCTCACACGAAGTCA > 1:605456/1‑55 ACGCGCAATAGCTGGCATGCGAATAAAGGCGAATATGACTTCTCACACGAAGTCA > 1:2565798/1‑55 ACGCGCAATAGCTGGCATGCGAATAAAGGCGAATATGACTTCTCACACGAAGTCA > 1:2045418/1‑55 ACGCTTTACAGGCCAGACAGCCCGACATCGCCTCTTTGACTTCGTGTGAGAAGTCATATTCGCCTTTATTCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/1094342‑1094415‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcaCGCGCAATAGCTGGCATGCGAATAAAGGCGAATATGACTTCTCACACGAAGTCAAAGAGGCGATGTCGGG < minE/1094431‑1094362 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |