| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 1213192 | 48 (0.810) | 3 (0.060) | 3/80 | NT | 6.0% | intergenic (+112/+32) | yobH/kdgR | hypothetical protein/predicted DNA‑binding transcriptional regulator |
| ? | minE | = 1213205 | 56 (1.210) | intergenic (+125/+19) | yobH/kdgR | hypothetical protein/predicted DNA‑binding transcriptional regulator | |||||
GTAAAATACTCTTATAGCAAGCGCGTTTAATATAACGCCACCTTCAACTTTATTTTTCTCATGCTAAATAAAGAACCTGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/1213112‑1213192‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagaacctgtcGGAATATCAAACAGACAGGTTCTTTATTTAGCATGAGAAAAATAAAGTTGAAGGTGGCGTTATATTAAAC < minE/1213205‑1213136 GTAAAATACTCTTATAGCAAGCGCGTTTAATATAACGCCACCTTCAACTTTATTTTTCTCATGCTAAATAA < 1:1305012/71‑1GTAAAATACTCTTATAGCAAGCGCGTTTAATATAACGCCACCTTCAACTTTATTTTTCTCATGCTAAATAA < 1:3245287/71‑1 AAATACTCTTATAGCAAGCGCGTTTAATATAACGCCACCTTCAACTTTATTTTTCTCATGCTAAATAAAG > 1:3719620/1‑70 AAATACTCTTATAGCAAGCGCGTTTAATATAACGCCAACTTCAACTTTATTTTTCTCATGCTAAATAAAGA < 1:3272818/71‑1 TACTCTTATAGCAAGCGCGTTTAATATAACGCCACCTTCAACTTTATTTTTCTCATGCTAAATAAAGAACC > 1:463065/1‑71 TAATATAACGCCACCTTCAACTTTATTTTTCTCATGCTAAATAAAGAACC > 1:3445576/1‑50 ATATAACGCCACCTTCAACTTTATTTTTCTCATGCTAAATAAAGAACCTGTCGGAATATCAAACAGACA < 1:3323388/69‑1 TATAACGCCACCTTCAACTTTATTTTTCTCATGCTAAATAAAGAACCTGTCGGAATATCAAACAGACAGGT < 1:1486156/71‑1 ATAACGCCACCTTCAACTTTATTTTTCTCATGCTAAATAAAGAACCTGTCGGAATATCAAACAGACAGG > 1:2911635/1‑69 AACGCCACCTTCAACTTTATTTTTCTCATGCTAAATAA < 1:1236995/38‑1 AACGCCACCTTCAACTTTATTTTTCTCATGCTAAATAA < 1:1787998/38‑1 AACGCCACCTTCAACTTTATTTTTCTCATGCTAAATAA < 1:2283461/38‑1 CGCCACCTTCAACTTTATTTTTCTCATGCTAAATAAAG > 1:1759531/1‑38 CGCCACCTTCAACTTTATTTTTCTCATGCTAAATAAAG > 1:2195674/1‑38 AGAACCTGTCGGAATATCAAACAGACAGGTTCTTTATTTAGCATGAGAAAAATAAAGTTGAAGGTGGCGT > 1:1741746/1‑70 GAACCTGTCGGAATATCAAACAGACAGGTTCTTTATTTAGCATGAGAAAAATAAAGTTGAAGGTGGCGTTA < 1:847101/71‑1 GAACCTGTCGGAATATCAAACAGACAGGTTCTTTATTTA < 1:1583279/39‑1 AACCTGTCGGAATATCAAACAGACAGGTTCTTTATTTAGCATGAGAAAAATAAAGTTGAAGGTGGCGTTAT < 1:3539485/71‑1 AACCTGTCGGAATATCAAACAGACAGGTTCTTTATTTAGCATGAGAAAA < 1:2954662/49‑1 ACCTGTCGGAATATCAAACAGACAGGTTCTTTATTTAGCATGAGAAAAATAAAGTTGAAGGTGGCGTTAT < 1:1659030/70‑1 CTGTCGGAATATCAAACAGACAGGTTCTTTATTTAGCATGAGAAAAATAAAGTTGAAGGTGGCGTTATATT < 1:3652226/71‑1 CTGTCCGAATATCAAACAGACAGGTTCTTTATTTAGCATGAGAAAAATAAAGTTGAAGGTGGCGTTATATT < 1:425702/71‑1 TGTCGGAATATCAAACAGACAGGTTCTTTATTTAGCATGAGAAAAATAAAGTTGAAGGTGGCGTTATATT < 1:3100352/70‑1 GTCGGAATATCAAACAGACAGGTTCTTTATTTAGCATGAGAAAAATAAAGTTGAAGGTGGCGTTATATTA > 1:3268333/1‑70 GTCGGAATATCAAACAGACAGGTTCTTTATTTAGCA > 1:3642098/1‑36 TCGGAATATCAAACAGACAGGTTCTTTATTTAGCATGAGAAAAATAAAGTTGAAGGTGGCGTTATATTAAA > 1:2914151/1‑71 TCGGAATATCAAACAGACAGGTTCTTTATTTAGCATGAGAAAAATAAAGTTGAAGGTGGCGTTATATTAAA > 1:3627323/1‑71 TCGGAATATCAAACAGACAGGTTCTTTATTTAGCATGAGAAAAATAAAGTTGAAGGTGGCGTTATATTAAA > 1:579758/1‑71 CGGAATATCAAACAGACAGGTTCTTTATTTAGCATGAGAAAAATAAAGTTGAAGGTGGCGTTATATTAAAC > 1:1532143/1‑71 GTAAAATACTCTTATAGCAAGCGCGTTTAATATAACGCCACCTTCAACTTTATTTTTCTCATGCTAAATAAAGAACCTGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/1213112‑1213192‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagaacctgtcGGAATATCAAACAGACAGGTTCTTTATTTAGCATGAGAAAAATAAAGTTGAAGGTGGCGTTATATTAAAC < minE/1213205‑1213136 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |