| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | 1443925 = | 106 (1.800) | 5 (0.090) | 3/92 | NT | 5.8% | coding (197/651 nt) | rcsB | DNA‑binding response regulator in two‑component regulatory system with RcsC and YojN |
| ? | minE | 1443960 = | 68 (1.280) | coding (232/651 nt) | rcsB | DNA‑binding response regulator in two‑component regulatory system with RcsC and YojN | |||||
TTGTTCATAGTCAGAACAATGATCGACAGGCTTGGGAAATGGCGCTTGATGTACTTGATTAAGGTAATGCCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < minE/1443997‑1443925‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccatTTCCCAAGCCTGTCGATCATTGTTCTGACTATGAACAACAACCCGGCGATTCTTAGTGCGGTATTGGATC > minE/1443960‑1444029 TTGTTCATAGTCAGAACAATGATCGACAGGCTTGGGAAATGGCGCTTGATGTACTTGATTAAGGTAATGC < 1:1482564/70‑1TTGTTCATAGTCAGAACAATGATCGACAGGCTTGGGAAATGGCGCTTGATGTACTTGATTAAGGTAATG < 1:596814/69‑1TTGTTCATAGTCAGAACAATGATCGACACGCTTGGGAAATGGCGCTTGATGTACTTGATTAAGGTAATG < 1:3645893/69‑1 GTTCATAGTCAGAACAATGATCGACAGGCTTGGGAAATGGCGCTTGATGTACTTGATTAAGGTAATGCCA < 1:9721/70‑1 GTTCATAGTCAGAACAATGATCGACAGGCTTGGGAAATGGCGCTTGATGTACTTGATTAAGGTAATGCCA < 1:2778636/70‑1 TTCATAGTCAGAACAATGATCGACAGGCTTGGGAAATGGCGCTTGATGTACTTGATTAAGGTAATGCCAT < 1:50765/70‑1 ATGATCGACAGGCTTGGGAAATGGCGCTTGATGTACTTGATTAAGGTAATGCCA < 1:886928/54‑1 ATGATCGACAGGCTTGGGAAATGGCGCTTGATGTACTTGATTAAGGTAATGCCA < 1:654450/54‑1 GATCGACAGGCTTGGGAAATGGCGCTTGATGTACTTGATTAAGGTAATGCC < 1:2016251/51‑1 GATCGACAGGCTTGGGAAATGGCGCTTGATGTACTTGATTAAGGTAATGCC < 1:3456269/51‑1 TCGACAGGCTTGGGAAATGGCGCTTGATGTACTTGATTAAGGTAATGCCAT > 1:1924664/1‑51 AATGGCGCTTGATGTACTTGATTAAGGTAATGCCATTTCCCAAGCCTGTCGATCATTGTTCTGACTATGAA > 1:1689059/1‑71 AATGGCGCTTGATGTACTCGATTAAGGTAATGCCATTTCCCAAGCCTGTCGATCATTGTTCTGACTATGAA > 1:2400115/1‑71 ATGGCGCTTGATGTACTTGATTAAGGTAATGCCATTTCCCAAGCCTGTCGATCATTGTTCTGACTATGAAC < 1:2825488/71‑1 ATGGCGCTTGATGTACTTGATTAAGGTAATGCCATTTCCCAAGCCTGTCGATCATTGTTCTGACTATGAAC < 1:2504565/71‑1 ATGTACTTGATTAAGGTAATGCCATTTCCCAAGCCTGTCGAT < 1:2549201/42‑1 GCCATTTCCCAAGCCTGTCGATCATTGTTCTGACTATGAACAACAACCCGGCGATTCTTAGTGCGGTATTG > 1:1196733/1‑71 GCCATTTCCCAAGCCTGTCGATCATTGTTCTGACTATGAA > 1:3100903/1‑40 GCCATTTCCCAAGCCTGTCGATCATTGTTCTGACTATGAA > 1:2149076/1‑40 GCCATTTCCCAAGCCTGTCGATCATTGTTCTGACTATGAA > 1:1939101/1‑40 CCATTTCCCAAGCCTGTCGATCATTGTTCTGACTATGAACAACAACCCGGCGATTCTTAGTGCGGTATTGG < 1:1696078/71‑1 CCATTTCCCAAGCCTGTCGATCATTGTTCTGACTATGAACAACAACCCGGCGATTCTTAGTGCGGTATTGG < 1:3032183/71‑1 CCATTTCCCAAGCCTGTCGATCATTGTTCTGACTATGAACAACAACCCGGCGATTCTTAGTGCGGTATTGG < 1:2494310/71‑1 CCATTTCCCAAGCCTGTCGATCATTGTTCTGACTATGAACAACAACCCGGCGATTCTT < 1:3059952/58‑1 TTTCCCAAGCCTGTCGATCATTGTTCTGACTATGAACAACAACCCGGCGATTCTTAGTGCGGTATTGGATC > 1:185716/1‑71 TTTCCCAAGCCTGTCGATCATTGTTCTGACTATGAACAACAACCCGGCGATTCTTAGTGCGGTATTGGATC > 1:1634060/1‑71 TTTCCCAAGCCTGTCGATCATTGTTCTGACTATGAACAACAACCCGGCGATTCTT < 1:2169121/55‑1 TTTCCCAAGCCTGTCGATCATTGTTCTGACTATGAACAA > 1:2066686/1‑39 TTTCCCAAGCCTGTCGATCATTGTTCTGACTATGAACAA > 1:747301/1‑39 TTGTTCATAGTCAGAACAATGATCGACAGGCTTGGGAAATGGCGCTTGATGTACTTGATTAAGGTAATGCCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < minE/1443997‑1443925‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccatTTCCCAAGCCTGTCGATCATTGTTCTGACTATGAACAACAACCCGGCGATTCTTAGTGCGGTATTGGATC > minE/1443960‑1444029 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |