| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 1540903 | 31 (0.530) | 4 (0.080) | 3/88 | NT | 13.6% | intergenic (‑5/+676) | yfcV/sixA | predicted fimbrial‑like adhesin protein/phosphohistidine phosphatase |
| ? | minE | = 1540916 | 24 (0.470) | intergenic (‑18/+663) | yfcV/sixA | predicted fimbrial‑like adhesin protein/phosphohistidine phosphatase | |||||
GATTGTTGCCGTAGAGGTGAACGCGCCCATCACCATTGCCGCAGCAATAGCTGTTTTAACAAACTTACTCATTATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/1540827‑1540903‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attatttATAGTTTAAGGACAAATAATGAGTAAGTTTGTTAAAACAGCTATTGCTGCGGCAATGGTGATGGGCGC < minE/1540916‑1540849 GATTGTTGCCGTAGAGGTGAACGCGCCCATCACCATTGCCGCAGCAATAGCTGTTTTAACAAACTTACTCA < 1:1352471/71‑1GATTGTTGCCGTAGAGGTGAACGCGCCCATCACCATTGCCGCAGCAATAGCTGTTTTAACAAACTTACTCA > 1:3333273/1‑71 TTGCCGTAGAGGTGAACGCGCCCATCACCATTGCCGCAGCAATAGCTGTTTTAACAAACTTACTCATTAT < 1:2035657/70‑1 GCCCATCACCATTGCCGCAGCAATAGCTGTTTTAACAAACTTACTCATTATTTATAGTTTAAGGACAAATA < 1:3084960/71‑1 TCACCATTGCCGCAGCAATAGCTGTTTTAACAAACTTACTCATTATTTATAGTTTAAGGACAAATAAT > 1:2095628/1‑68 TCACCATTGCCGCAGCAATAGCTGTTTTAACAAACTTACTCATTATTTATAGTTTAAGGACAAATAAT > 1:577919/1‑68 CAAACTTACTCATTATTTATAGTTTAAGGACAAAT > 1:1042812/1‑35 ATTATTTATAGTTTAAGGACAAATAATGAGTAAGTTTGTTAAAACAGCTATTGCTGCGGCAATGGTGATGG < 1:2028467/71‑1 ATTATTTATAGTTTAAGGACAAATAATGAGTAAGTTTGTTAAAACAGCTATTGCTGCGGCAATGGTGATGG < 1:2763609/71‑1 ATTATTTATAGTTTAAGGACAAATAATGAGTAAGTTTGTTAAAACAGCTATTGCTGCGGCAATGGTGATGG < 1:2765456/71‑1 ATTATTTATAGTTTAAGGACAAATAATGAGTAAGTTTGTTAAAACAGCTATTGCTGCGGCAATGGTGATG < 1:2880973/70‑1 TATTTATAGTTTAAGGACAAATAATGAGTAAGTTTGTTAAAACAGCTATTGCTGCGGCAATGGTGATGGGC > 1:1769850/1‑71 TTTATAGTTTAAGGACAAATAATGAGTAAGTTTGTTAAAACAGCTATTGCTGCGGCAATGGTGATGGGCGC < 1:1384039/71‑1 TTTATAGTTTAAGGACAAATAATGAGTAAGTTTGTTAAAACAGCTATTGCTGCGGCAA < 1:1509950/58‑1 TTTATAGTTTAAGGACAAATAATGAGTAAGTTTGTTAAAACAGCTATTGCTGCGGCAA < 1:329138/58‑1 TTATAGTTTAAGGACAAATAATGAGTAAGTTTGTTAAAACAGCTATTGCTGCGGCAATGGTG < 1:3646978/62‑1 GATTGTTGCCGTAGAGGTGAACGCGCCCATCACCATTGCCGCAGCAATAGCTGTTTTAACAAACTTACTCATTATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/1540827‑1540903‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attatttATAGTTTAAGGACAAATAATGAGTAAGTTTGTTAAAACAGCTATTGCTGCGGCAATGGTGATGGGCGC < minE/1540916‑1540849 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |