| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 1956306 | 71 (1.200) | 5 (0.100) | 3/88 | NT | 7.9% | intergenic (+249/+140) | ygfA/serA | predicted ligase/D‑3‑phosphoglycerate dehydrogenase |
| ? | minE | = 1956330 | 55 (1.080) | intergenic (+273/+116) | ygfA/serA | predicted ligase/D‑3‑phosphoglycerate dehydrogenase | |||||
CAAGCCCTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGTAAATCCCCATTAAATAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/1956231‑1956306‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaataaaTCAAAGTCAGATCAATGCGTTGTGTTTATTTAATGGGGATTTACGATGGCAGGGCAGCATGGGGCTGTAA < minE/1956330‑1956261 CAAGCCCTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGTAAATCCCCATTA < 1:616808/70‑1 AAGCCCTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGTAAATCCCCATTAAA > 1:955106/1‑71 AAGCCCTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGTAAATCCCCATTAAA > 1:902331/1‑71 AAGCCCTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGTAAATCCCCATTAAA > 1:770402/1‑71 AGCCCTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGTAAATCCCCATTAAA > 1:3627663/1‑70 AGCCCTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGTAAATCCCCATTAAA > 1:3088507/1‑70 agcGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGTAAATCCCCATTAAATA > 1:3018035/4‑60 CTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGTAAATCCCCATTA < 1:1377140/48‑1 CTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGTAAATCCCCATTA < 1:2357253/48‑1 TTACCGTTACAGCCCCATGCTGCCCTGCCATCGTAAATCCCCATTAAA < 1:300669/48‑1 TTACCGTTACAGCCCCATGCTGCCCTGCCATCGTAAATCCCCATTAAA < 1:3285953/48‑1 GCCCCATGCTGCCCTGCCATCGTAAATCCCCATTAAATAAATCAAAGTCAGATCAATGCGTTGTGTTTATT < 1:1325796/71‑1 GCCCCATGCTGCCCTGCCATCGTAAATCCCCATTAAATAAATCAAAGTCAGATCAATGCGTTGTGTTTATT < 1:696130/71‑1 CCCCATGCTGCCCTGCCATCGTAAATCCCCATTAAATAAATCAAAGTCAGATCAATGCGTTGTGTTTATTT < 1:2790486/71‑1 CCCCATGCTGCCCTGCCATCGTAAATCCCCATTAAATAAATCAAAGTCAGATCAATGCGTTGTGTTTATTT < 1:2435847/71‑1 CCCCATGCTGCCCTGCCATCGTAAATCCCCATTAAATAA > 1:2543976/1‑39 CCCCATGCTGCCCTGCCATCGTAAATCCCCATTAAATAA > 1:3716523/1‑39 TGCTGCCCTGCCATCGTAAATCCCCATTAAATAAATCAAAGTCAGATCAATGCGTTGTGTTTATTTAATGG < 1:365947/71‑1 AAATAAATCAAAGTCAGATCAATGCGTTGTGTTTATTTAATGGGGATTTACGATGGCAGGGCAGCATGGGG < 1:2902654/71‑1 AAATAAATCAAAGTCAGATCAATGCGTTGTGTTTATTTAATGGGGATTTACGATGGCAGGGCAGCATGGGG < 1:1538635/71‑1 AAATAAATCAAAGTCAGATCAATGCGTTGTGTTTATTTAATGGGGATTTAC > 1:895902/1‑51 ATAAATCAAAGTCAGATCAATGCGTTGTGTTTATTTAATGGGGATTTACGATGGCAGGGCAGCATGGGGCT > 1:832220/1‑71 ATAAATCAAAGTCAGATCAATGCGTTGTGTTTATTTAATGGGGATTTACGATGGCAGGGCAGCATGGGGCT < 1:3155168/71‑1 ATAAATCAAAGTCAGATCAATGCGTTGTGTTTATTTAATGGGGATTTACGATGGCAGGGCAGCATGGGGC > 1:3524106/1‑70 AAATCAAAGTCAGATCAATGCGTTGTGTTTATTTAATGGGGATTTACGATGGCAGGGCAGCATGGGGCTG > 1:1775529/1‑70 AAATCAAAGTCAGATCAATGCGTTGTGTTTATTTAATGGGGATTTACGATGGCAG > 1:2467530/1‑55 AATCAAAGTCAGATCAATGCGTTGTGTTTATTTAATGGGGATTTACGATGGCAGGGCAGCATGGGGCTGT < 1:3668183/70‑1 AATCAAAGTCAGATCAATGCGTTGTGTTTATTTAATGGGGATTTACGATGGCAGGGCAGCATGGGGCTGT < 1:3672562/70‑1 AATCAAAGTCAGATCAATGCGTTGTGTTTATTTAATGGGGATTTACGATGGCAGGGCAGCATGGGGCTGT < 1:842994/70‑1 ATCAAAGTCAGATCAATGCGTTGTGTTTATTTAATGGGGATTTACGATGGCAGGGCAGCATGGGGCTGTAA < 1:696811/71‑1 ATCAAAGTCAGATCAATGCGTTGTGTTTATTTAATGGGGATTTACGATGGCAGGGCAGCATGGGGCTGTAA < 1:1768544/71‑1 CAAGCCCTCGCTTCGGTGAGGGCTTTACCGTTACAGCCCCATGCTGCCCTGCCATCGTAAATCCCCATTAAATAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/1956231‑1956306‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaataaaTCAAAGTCAGATCAATGCGTTGTGTTTATTTAATGGGGATTTACGATGGCAGGGCAGCATGGGGCTGTAA < minE/1956330‑1956261 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |