| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | 2001438 = | 72 (1.220) | 4 (0.080) | 3/92 | NT | 5.6% | intergenic (‑156/‑49) | gss/yghU | fused glutathionylspermidine amidase and glutathionylspermidine synthetase/predicted S‑transferase |
| ? | minE | 2001487 = | 70 (1.320) | coding (1/867 nt) | yghU | predicted S‑transferase | |||||
CGGGCTGATAAGTATTGTCTGTCATAGTGAGTTGCCTTCTGAGTGGTAGTGTTGAAGCAGTGTAGCAGGTCACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < minE/2001511‑2001438‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcactATGACAGACAATACTTATCAGCCCGCGAAAGTCTGGACGTGGGATAAATCCGCTGGCGGCGCGTTCGCC > minE/2001487‑2001555 CGGGCTGATAAGTATTGTCTGTCATAGTGAGTTGCCTTCTGAGTGGTAGTGTTGAAGCAGTGTAGCAGGT < 1:909730/70‑1 GCTGATAAGTATTGTCTGTCATAGTGAGTTGCCTTCTGAGTGGTAGTGTTGAAGCAGTGTAGCAGGTCACT > 1:2985658/1‑71 GCTGATAAGTATTGTCTGTCATAGTGAGTTGCCTTCTGAGTGGTAGTGTTGAAGCAGTGTAGCAGGTCACT > 1:3556099/1‑71 GCTGATAAGTATTGTCTGTCATAGTGAGTTGCCTTCTGAGTGGTAGTGTTGAAGCAGTGTAGCAGGTCACT > 1:1959937/1‑71 ATAAGTATTGTCTGTCATAGTGAGTTGCCTTCTGAGTGGTAGTGTTGAAGCAGTGTAGCAGGT > 1:3408956/1‑63 ATAAGTATTGTCTGTCATAGTGAGTTGCCTTCTGAGTGGTAGTGTTGAAGCAGTGTAGAAGGT > 1:1581746/1‑63 TGTCATAGTGAGTTGCCTTCTGAGTGGTAGTGTTGAAGCAGTGTAGCAGGTC < 1:1792320/52‑1 ATAGTGAGTTGCCTTCTGAGTGGTAGTGTTGAAGCAGTGTAGCAGGTCAC > 1:1537685/1‑50 ATAGTGAGTTGCCTTCTGAGTGGTAGTGTTGAAGCAGTGTAGCAGGTCAC > 1:1458686/1‑50 ATAGTGAGTTGCCTTCTGAGTGGTAGTGTTGAAGCAGTGTAGCAGGTCAC > 1:3134947/1‑50 GCCTTCTGAGTGGTAGTGTTGAAGCAGTGTAGCAGGTC > 1:1603376/1‑38 CCTTCTGAGTGGTAGTGTTGAAGCAGTGTAGCAGGTCACTATGACAGACAATACTTAT < 1:2011662/58‑1 TTCTGAGTGGTAGTGTTGAAGCAGTGTAGCAGGTCACTATGACAGACAATACTTATCA > 1:2887023/1‑58 TTCTGAGTGCTAGTGTTGAAGCAGTGTAGCAGGTCACTATGACAGACAATACTTATCA > 1:1910939/1‑58 CTGAGTGGTAGTGTTGAAGCAGTGTAGCAGGTCACTATGACAGACAATACTTATCAGCCCGCGAAAGTC < 1:488534/69‑1 CTGAGTGGTAGTGTTGAAGCAGTGTAGCAGGTCAC > 1:791736/1‑35 CTGAGTGGTAGTGTTGAAGCAGTGTAGCAGGTCAC > 1:2316830/1‑35 CACTATGACAGACAATACTTATCAGCCCGCGAAAGTCTGGACGTGGGATAA < 1:412244/51‑1 CACTATGACAGACAATACTTATCAGCCCGCGAAAGTCTGGACGTGGGATAA < 1:2945408/51‑1 CACTATGACAGACAATACTTATCAGCCCGCGAAAGTCTGGACGTGGGATAA < 1:765405/51‑1 ACTATGACAGACAATACTTATCAGCCCGCGAAAGTCTGGACGTGGGATAAATCCGCTGGCGGCGCGTTCGC < 1:3400425/71‑1 ACTATGACAGACAATACTTATCAGCCCGCGAAAGTCTGGACGTGGGATAAATCCGCTGGCGGCGCGTTC < 1:2112463/69‑1 ACTATGACAGACAATACTTATCAGCCCGCGAAAGTCTGGACGTGGGATAAATCCGCTGGCGGCGCGTTC < 1:3604897/69‑1 ACTATGACAGACAATACTTATCAGCCCGCGAAAGTCTG < 1:1407191/38‑1 CTATGACAGACAATACTTATCAGCCCGCGAAAGTCTGGACGTGGGATAAATCCGCTGGCGGCGCGTTCGCC < 1:2661286/71‑1 CTATGACAGACAATACTTATCAGCCCGCGAAAGTCTGGACGTGGGATAAATCCGCTGGCGGCGCGTTCGC < 1:2011438/70‑1 TATGACAGACAATACTTATCAGCCCGCGAAAGTCTGGACGTGGGATAAATCCGCTGGCGGCGCGTTCGCC < 1:634008/70‑1 TATGACAGACAATACTTATCAGCCCGCGAAAGTCTGGACGTGGGATAAATCCGCTGGCGGCGCGTTCGCC > 1:1514408/1‑70 TATGACAGACAATACTTATCAGCCCGCGAAAGTCTGGACGTGGGA > 1:1275163/1‑45 CGGGCTGATAAGTATTGTCTGTCATAGTGAGTTGCCTTCTGAGTGGTAGTGTTGAAGCAGTGTAGCAGGTCACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < minE/2001511‑2001438‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcactATGACAGACAATACTTATCAGCCCGCGAAAGTCTGGACGTGGGATAAATCCGCTGGCGGCGCGTTCGCC > minE/2001487‑2001555 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |