| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 2192617 | 50 (0.850) | 7 (0.130) | 4/92 | NT | 13.3% | coding (86/639 nt) | sspA | stringent starvation protein A |
| ? | minE | = 2192634 | 46 (0.860) | coding (69/639 nt) | sspA | stringent starvation protein A | |||||
GAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/2192544‑2192617‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccaTCAGGTCCGCATTGTGCTGGCTGAGAAAGGTGTAAGTTTCGAGATCGAACACGTGGAAAAGGACAA < minE/2192634‑2192569 GAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAG > 1:1976976/1‑71GAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAG > 1:2764600/1‑71GAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAG > 1:3104829/1‑71 AGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGC < 1:594614/71‑1 AGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGC < 1:1470689/71‑1 GTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGC > 1:2017169/1‑69 GTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGC > 1:3102177/1‑69 GTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGC > 1:3389177/1‑69 AATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGC < 1:1541162/66‑1 GATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCA > 1:581184/1‑59 GATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCA > 1:450871/1‑59 GATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCA > 1:3266040/1‑59 TCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCC < 1:529845/60‑1 GTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCATCAGGTCCGCATTGTG > 1:3176845/1‑63 CTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCATCAGGTCCGCATTGTGCTGGCTGAGAA < 1:3587911/71‑1 CTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCATCAGGTCCGCATTGTGCTGGCTGAGAA < 1:1738971/71‑1 CGTGTTCGATCTCGAAACTTACACCTTTCTTAGCCATCAGGTCCGCATTGTGCTGGCTGAGAA > 1:2909484/1‑63 CGTGTTCGATCTCGAAACTTACACCTTTCTTAGCCATCAGGTCCGCATTGTGCTGGCTGAGAA > 1:2646131/1‑63 CGTGTTCGATCTCGAAACTTACACCTTTCTTAGCCATCAGGTCCGCATTGTGCTGGCTGAGAA > 1:932870/1‑63 CGATCTCGAAACTTACACCTTTCTCAGCCATCAGGTCCGCATTGTGCTGGCTGA > 1:500206/1‑54 GCCATCAGGTCCGCATTGTGCTGGCTGAGAAAGGTGTAAGTTTCGAGATCGAACACGTGGAAAAGGACAA < 1:15893/70‑1 GCCATCAGGTCCGCATTGTGCTGGCTGAGAAAGGTGTAAGTTTCGAGATCGAACACGTGGAAAAGGACAA < 1:727583/70‑1 GAGGTCAATCAGATCCTGAGGCGGATTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/2192544‑2192617‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agccaTCAGGTCCGCATTGTGCTGGCTGAGAAAGGTGTAAGTTTCGAGATCGAACACGTGGAAAAGGACAA < minE/2192634‑2192569 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |