| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | 2341764 = | 60 (1.020) | 6 (0.120) | 3/88 | NT | 11.8% | coding (1186/1410 nt) | glnA | glutamine synthetase |
| ? | minE | 2341812 = | 38 (0.750) | coding (1234/1410 nt) | glnA | glutamine synthetase | |||||
CGTTCAGTGCTTCTTCCAGAGAGCCTGCAACCTGTGGGATCTCTTTCGCTTCTTCTGGCGGCAGGTCATACAGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < minE/2341839‑2341764‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acaggttGCAGGCTCTCTGGAAGAAGCACTGAACGAACTGGATCTGGACCGCGAGTTC > minE/2341812‑2341862 CGTTCAGTGCTTCTTCCAGAGAGCCTGCAACCTGTGGGATCTCTTTCGCTTCTTCTGGCGGCAGGTCATA > 1:3052287/1‑70 CAGTGCTTCTTCCAGAGAGCCTGCAACCTGTGGGATCTCTTTCGCTTCTTCTGGCGGCAGGTCATACAGGT > 1:3689631/1‑71 AGTGCTTCTTCCAGAGAGCCTGCAACCTGTGGGATCTCTTTCGCTTCTTCTGGCGGCAGGTCATACAGGT < 1:438747/70‑1 GTGCTTCTTCCAGAGAGCCTTCAACCTGTGGGATCTCTTTCGCTTCTTCTGGCGGCAGGTCATACAG < 1:2773160/67‑1 GCAACCTGTGGGATCTCTTTCGCTTCTTCTGGCGGCAGGTCATACAGGTT < 1:2422052/50‑1 GTGGGATCTCTTTCGCTTCTTCTGGCGGCAGGTCATACAGGTTGCAGGCTCTCTGGAAGA < 1:1309055/60‑1 GTGGGATCTCTTTCGCTTCTTCTGGCGGCAGGTCATACAGGTTGCAGGCTCTCTGGAAGA < 1:1451128/60‑1 GTGGGATCTCTTTCGCTTCTTCTGGCGGCAGGTCATACAGGTTGCAGGCTCTCTGGAAGA < 1:3153643/60‑1 GTGGGATCTCTTTCGCTTCTTCTGGCGGCAGGTCATACAGG > 1:2594909/1‑41 GTGGGATCTCTTTCGCTTCTTCTGGCGGCAGGTCATACAGG > 1:2942058/1‑41 GGGATCTCTTTCGCTTCTTCTGGCGGCAGGTCATACAGGTTGCAGGCTCTCTGGAAGAAGCAC < 1:3212745/63‑1 GGGATCTCTTTCGCTTCTTCTGGCGGCAGGCCATACAGGTTGCAGGCTCTCTGGAAGAAGCAC < 1:951210/63‑1 GATCTCTTTCGCTTCTTCTGGCGGCAGGTCATACAGGTTGCAGGCTCTCTGGAAGAAGCACTG > 1:400513/1‑63 CAGGTTGCAGGCTCTCTGGAAGAAGCACTGAACGAACTGGATCTGG > 1:2590428/1‑46 AGGTTGCAGGCTCTCTGGAAGAAGCACTGAACGAACTGGATCTGGACCGCGAGTTC > 1:2291783/1‑56 AGGTTGCAGGCTCTCTGGAAGAAGCACTGAACGAACTGGATCTGGACCGCGAGTTC > 1:2959359/1‑56 CGTTCAGTGCTTCTTCCAGAGAGCCTGCAACCTGTGGGATCTCTTTCGCTTCTTCTGGCGGCAGGTCATACAGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < minE/2341839‑2341764‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acaggttGCAGGCTCTCTGGAAGAAGCACTGAACGAACTGGATCTGGACCGCGAGTTC > minE/2341812‑2341862 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |