| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 2751796 | 56 (0.950) | 6 (0.120) | 3/90 | NT | 11.7% | coding (801/990 nt) | rpoA | RNA polymerase, alpha subunit |
| ? | minE | = 2751807 | 41 (0.790) | coding (812/990 nt) | rpoA | RNA polymerase, alpha subunit | |||||
GAAAGAAGAGAAACCAGAGTTCGATCCGATCCTGCTGCGCCCTGTTGACGATCTGGAATTGACTGTCCGCTCTGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/2751721‑2751796‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tctgctTTAAGGCAGTTAGCAGAGCGGACAGTCAATTCCAGATCGTCAACAGGGCGCAGCAGGATCGGATCGAACT < minE/2751807‑2751738 GAAAGAAGAGAAACCAGAGTTCGATCCGATCCTGCTGCGCCCTGTTGACGATCTGGAATTGACTGTCCGCT > 1:1919766/1‑71 AAAGAAGAGAAACCAGAGTTCGATCCGATCCTGCTGCGCCCTGTTGACGATCTGGAATTGACTGTCCGCTC < 1:64419/71‑1 AGAAGAGAAACCAGAGTTCGATCCGATCCTGCTGCGCCCTGTTGACGATCTGGAATTGACTGTCCGCTCTG > 1:3511928/1‑71 AAGAGAAACCAGAGTTCGATCCGATCCTGCTGCGCCCTGTTGACGATCTGGAATTGACTGTCCGCTCTGC > 1:2015452/1‑70 AGAGAAACCAGAGTTCGATCCGATCCTGCTGCCCCCTGTTGACGATCTGGAATTGACTGTCCGCTCTGCT > 1:2121330/1‑70 GAGAAACCAGAGTTCGATCCGATCCTGCTGCGCCCTGTTGACGATCTGGAATTGACTGTCCGCTCTGC > 1:1421410/1‑68 AGAAACCAGAGTTCGATCCGATCCTGCTGCGCCCTGTTGACGATCTGGAATTGACTGTCCGCT < 1:2314653/63‑1 TTCGATCCGATCCTGCTGCGCCCTGTTGACGATCTGGAATTGACTGTCCGCTCTGCT < 1:356771/57‑1 TTCGATCCGATCCTGCTGCGCCCTGTTGACGATCTGGAATTGACTGTCCGCTCTGCT < 1:2768742/57‑1 TGCGCCCTGTTGACGATCTGGAATTGACTGTCCGCTC > 1:1066833/1‑37 TGCGCCCTGTTGACGATCTGGAATTGACTGTCCGCTC > 1:3404202/1‑37 TGCGCCCTGTTGACGATCTGGAATTGACTGTCCGCTC > 1:3418932/1‑37 TGCGCCCTGTTGACGATCTGGAATTGACTGTCCGCTC > 1:3516606/1‑37 CCTGTTGACGATCTGGAATTGACTGTCCGCTCTGCTTTAAGGCAGTTAGCAGA < 1:602418/53‑1 CCTGTTGACGATCTGGAATTGACTGTCCGCTCTGCTTTAAGGCAGTTAGCAGA < 1:3236001/53‑1 CCTGTTGACGATCTGGAATTGACTGTCCGCTCTGCTTTAAGGCAGTT < 1:1127988/47‑1 CCTGTTGACGATCTGGAATTGACTGTCCGCTCTGCTTTAAGGCAGTT < 1:3298149/47‑1 CCTGTTGACGATCTGGAATTGACTGTCCGCTCTGCTTTAAGGCAGTT < 1:2096051/47‑1 TGTTGACGATCTGGAATTGACTGTCCGCTCTGCTTTAAGGCAGTTAGCAGAGC > 1:2552419/1‑53 CTGCTTTAAGGCAGTTAGCAGAGCGGACAGTCAATTCCAGATCGTCAACAGGGCGCAGCAGGATCGGATC > 1:2793416/1‑70 CTGCTTTAAGGCAGTTAGCAGAGCGGACAGTCAATTCCAGATCGTCAACAGGGCGCAGCAGGATCGGATC > 1:2091609/1‑70 CTGCTTTAAGGCAGTTAGCAGAGCGGACAGTCAATTCCAGATCGTCAACAGGGCGCAGCAGGATCGGATC > 1:374708/1‑70 CTGCTTTAAGGCAGTTAGCAGAGCGGACAGTCAATTCCAGATCGTCAACAGGGCGCAGCAGGATCGGATC > 1:1465211/1‑70 TGCTTTAAGGCAGTTAGCAGAGCGGACAGTCAATTCCAGATCGTCAACAGGGCGCAGCAGGATCGGATCG > 1:3150946/1‑70 CTTTAAGGCAGTTAGCAGAGCGGACAGTCAATTCCAGATCGTCAACAGGGCGCAGCAGGATCGGATCGAAC < 1:3161614/71‑1 TTTAAGGCAGTTAGCATAGCGGACAGTCAATTCCATATCGTCAACAGGGCGCAGCAGGATCGGATCGAAC > 1:1404502/1‑70 TTTAAGGCAGTTAGCAGAGCGGACAGTCAATTCCAGATCGTCAACAGGGCGCAGCAGGATCGGATCGAACT > 1:546638/1‑71 GAAAGAAGAGAAACCAGAGTTCGATCCGATCCTGCTGCGCCCTGTTGACGATCTGGAATTGACTGTCCGCTCTGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > minE/2751721‑2751796‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tctgctTTAAGGCAGTTAGCAGAGCGGACAGTCAATTCCAGATCGTCAACAGGGCGCAGCAGGATCGGATCGAACT < minE/2751807‑2751738 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |