| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 246182 | 54 (0.920) | 5 (0.100) | 4/88 | NT | 10.5% | coding (572/690 nt) | phoB | DNA‑binding response regulator in two‑component regulatory system with PhoR (or CreC) |
| ? | minE | = 246199 | 39 (0.770) | coding (589/690 nt) | phoB | DNA‑binding response regulator in two‑component regulatory system with PhoR (or CreC) | |||||
CGCATCCTGAGCGCGTGTACAGCCGCGAGCAGCTGTTAAACCACGTCTGGGGAACTAACGTGTATGTGGAAGACCGCACGGTCGATGTCCACATTCGTCGCCTGCGTAAAGCACTGGAGCCCGGCGGGCATGACCGCATG > minE/246113‑246252 | cGCATCCTGAGCGCGTGTACAGCCGCGAGCAGCTGTTAAACCACGTCTGGGGAACTAACGTGTATGTGGaa < 1:332589/71‑1 (MQ=255) cATCCTGAGCGCGTGTACAGCCGCGAGCAGCTGTTAAACCACGTCTGGGGAACTAACGTGTATGTGGAAGa < 1:444274/71‑1 (MQ=255) aTCCTGAGCGCGTGTACAGCCGCGAGCAGCTGTTAAACCACGTCTGGGGAACTAACGTGTATGTGGAAGAc > 1:920205/1‑71 (MQ=255) aTCCTGAGCGCGTGTACAGCCGCGAGCAGCTGTTAAACCACGTCTGGGGAACTAACGTGTATGTGGAAGAc > 1:3361365/1‑71 (MQ=255) aTCCTGAGCGCGTGTACAGCCGCGAGCAGCTGTTAAACCACGTCTGGGGAACTAACGTGTATGTGGAAGAc > 1:2236561/1‑71 (MQ=255) aTCCTGAGCGCGTGTACAGCCGCGAGCAGCTGTTAAACCACGTCTGGGGAACTAACGTGTATGTGGAAGAc > 1:562773/1‑71 (MQ=255) cTGAGCGCGTGTACAGCCGCGAGCAGCTGTTAAACCACGTCTGGGGAACTAACGTGTATGTGGAAGACCg < 1:1071720/70‑1 (MQ=255) cTGAGCGCGTGTACAGCCGCGAGCAGCTGTTAAACCACGTCTGGGGAACTAACGTGTATGTGGAAGACCg > 1:569432/1‑70 (MQ=255) gAGCGCGTGTACAGCCGCGAGCAGCTGTTAAACCACGTCTGGGGAACTAACGTGTATGTGGAAGACCGCAc > 1:2687091/1‑71 (MQ=255) aGCGCGTGTACAGCCGCGAGCAGCTGTTAAACCACGTCTGGGGAACTAACGTGTATGTGGAAGACCGCACg > 1:297286/1‑71 (MQ=255) aGCGCGTGTACAGCCGCGAGCAGCTGTTAAACCACGTCTGGGGAACTAACGTGTATGTGGAAGACCGCACg < 1:1896955/71‑1 (MQ=255) aGCGCGTGTACAGCCGCGAGCAGCTGTTAAACCACGTCTGGGGAACTAACGTGTATGTGGAAGACCGCACg > 1:754040/1‑71 (MQ=255) cgcgTGTACAGCCGCGAGCAGCTGTTAAACCACGTCTGGGGAACTAACGTGTATGTGGAAGACCGc < 1:2512277/66‑1 (MQ=255) cgcgTGTACAGCCGCGAGCAGCTGTTAAACCACGTCTGGGGAACTAACGGGTATGTGGAAGACCGc < 1:2621064/66‑1 (MQ=255) gtgtACAGCCGCGAGCAGCTGTTAAACCACGTCTGGGGAACTAACGTGTATGTGGAcatcgaccgtgcggt > 1:621649‑M1/1‑56 (MQ=255) gtgtACAGCCGCGAGCAGCTGTTAAACCACGTCTGGGGAACTAACGTGTATGTGGAcatcgaccgtgcgg > 1:2336841‑M1/1‑56 (MQ=255) gtgtACAGCCGCGAGCAGCTGTTAAACCACGTCTGGGGAACTAACGTGTATGTGGAAGACCGCACGGTc > 1:3513382/1‑69 (MQ=255) gtgtACAGCCGCGAGCAGCTGTTAAACCACGTCTGGGGAACTAACGTGTATGTGGAAGACCGCACGGTCg > 1:3318967/1‑70 (MQ=255) gtgtACAGCCGCGAGCAGCTGTTAAACCACGTCTGGGGAACTAACGTGTATGTGGAAGACCGCACGGTCg > 1:3558265/1‑70 (MQ=255) gtgtACAGCCGCGAGCAGCTGTTAAACCACGTCTGGGGAACTAACGTGTATGTGGAAGACCGCACGGTCGa > 1:1220530/1‑71 (MQ=255) gtACAGCCGCGAGCAGCTGTTAAACCACGTCTGGGGAACTAACGTGTATGTGGaa < 1:620537/55‑1 (MQ=255) gtACAGCCGCGAGCAGCTGTTAAACCACGTCTGGGGAACTAACGTGTATGTGGaa < 1:1090164/55‑1 (MQ=255) gtACAGCCGCGAGCAGCTGTTAAACCACGTCTGGGGAACTAACGTGTATGTGGaa < 1:903348/55‑1 (MQ=255) tACAGCCGCGAGCAGCTGTTAAACCACGTCTGGGGAACTAACGTGTATGTGGAcatcgaccgtgcggtctt < 1:134360‑M1/71‑19 (MQ=255) tACAGCCGCGAGCAGCTGTTAAACCACGTCTGGGGAACTAACGTGTATGTGGAAGACCGCACGGTCGATGt < 1:2409404‑M2/71‑2 (MQ=255) tACAGCCGCGAGCAGCTGTTAAACCACGTCTGGGGAACTAACGTGTATGTGGAAGACCGCACGGTCGATGt < 1:562996‑M2/71‑2 (MQ=255) aacAGCTGCTCGCGGCTGTTAAACCACGTCTGGGGAACTAACGTGTATGTGGAAGACCGCACGGTCGATGt < 1:8845‑M2/70‑2 (MQ=255) cAGCCGCGAGCAGCTGTTAAACCACGTCTGGGGAACTAACGTGTATGTGGAAGACCGCACGGTCGATGtc > 1:3487756‑M2/1‑68 (MQ=255) gCCGCGAGCAGCTGTTAAACCACGTCTGGGGAACTAACGTGTATGTGGAAGACCGCACGGTCGATGtcca < 1:281097‑M2/70‑5 (MQ=255) gCCGCGAGCAGCTGTTAAACCACGTCTGGGGAACTAACGTGTATGTGGAAGACCGCACGGTCGATGtcca > 1:3404091‑M2/1‑66 (MQ=255) ccGCGAGCAGCTGTTAAACCACGTCTGGGGAACTAACGTGTATGTGGAAGACCGCACGGTCGATGtccaca < 1:265098‑M2/71‑7 (MQ=255) cgcgAGCAGCTGTTAAACCACGTCTGGGGAACTAACGTGTATGTGGAcatcgaccgtgcggtcttccaca < 1:3310944‑M1/70‑24 (MQ=255) cgcgAGCAGCTGTTAAACCACGTCTGGGGAACTAACGTGTATGTGGAAGACCGCACGGTCGATGtccacat < 1:1182158‑M2/71‑8 (MQ=255) gcgAGCAGCTGTTAAACCACGTCTGGGGAACTAACGTGTATGTGGAAGACCGCACGGTCGATGTCCACAtt < 1:1345977/71‑1 (MQ=255) cgAGCAGCTGTTAAACCACGTCTGGGGAACTAACGTGTATGTGGAcatcgaccgtgcggtcttccacata > 1:2833908‑M1/1‑45 (MQ=255) cgAGCAGCTGTTAAACCACGTCTGGGGAACTAACGTGTATGTGGAAGACCGCACGGTCGATGTCCACATtc > 1:530108/1‑71 (MQ=255) agcagcTGTTAAACCACGTCTGGGGAACTAACGTGTATGTGGAAGACCGCACGGTCGAt < 1:2703179/59‑1 (MQ=255) agcagcTGTTAAACCACGTCTGGGGAACTAACGTGTATGTGGAAGACCGCACGGTCGAt < 1:382017/59‑1 (MQ=255) cagcTGTTAAACCACGTCTGGGGAACTAACGTGTATGTGGAAGACCGCACGGTc < 1:450053/54‑1 (MQ=255) cagcTGTTAAACCACGTCTGGGGAACTAACGTGTATGTGGAAGACCGCACGGTc < 1:454416/54‑1 (MQ=255) agcTGTTAAACCACGTCTGGGGAACTAACGTGTATGTGGAAGACCGCACGGTCGATGTCCACATTCGTCGc > 1:343293/1‑71 (MQ=255) agcTGTTAAACCACGTCTGGGGAACTAACGTGTATGTGGAAGACCGCACGGTCGATGTCCACATTCGTCGc > 1:3436128/1‑71 (MQ=255) gcTGTTAAACCACGTCTGGGGAACTAACGTGTATGTGGAAGACCGCACGGTCGATGTCCACATTCGTCGcc < 1:621596/71‑1 (MQ=255) gcTGTTAAACCACGTCTGGGGAACTAACGTGAATGTGGAAGACAGCACGGTCGATGTCCACATTCGTCGc > 1:976472/1‑70 (MQ=255) tGTTAAACCACGTCTGGGGAACTAACGTGTATGTGGAAGACCGCACGGTCGATGtccaca > 1:258395‑M2/1‑54 (MQ=255) tGTTAAACCACGTCTGGGGAACTAACGTGTATGTGGAAGACCGCACGGTCGATGTCCACATTCGTCGCCt > 1:717513/1‑70 (MQ=255) ttAAACCACGTCTGGGGAACTAACGTGTATGTGGAAGAc < 1:2229917/39‑1 (MQ=255) ttAAACCACGTCTGGGGAACTAACGTGTATGTGGAAGAc < 1:3008298/39‑1 (MQ=255) ttAAACCACGTCTGGGGAACTAACGTGTATGTGGAAGAc < 1:2045845/39‑1 (MQ=255) ttAAACCACGTCTGGGGAACTAACGTGTATGTGGAAGAc < 1:2041516/39‑1 (MQ=255) ttAAACCACGTCTGGGGAACTAACGTGTATGTGGAAGACCGCACg > 1:2270008/1‑45 (MQ=255) ttAAACCACGTCTGGGGAACTAACGTGTATGTGGAAGACCGCACg > 1:2437027/1‑45 (MQ=255) ttAAACCACGTCTGGGGAACTAACGTGTATGTGGAAGACCGCACGGTc < 1:1212783/48‑1 (MQ=255) ttAAACCACGTCTGGGGAACTAACGTGTATGTGGAAGACCGCACGGTc < 1:45412/48‑1 (MQ=255) ttAAACCACGTCTGGGGAACTAACGTGTATGTGGAAGACCGCACGGTc < 1:1639075/48‑1 (MQ=255) ttAAACCACGTCTGGGGAACTAACGTGTATGTGGAAGACCGCACGGTCGATGTCCACATTCGTCGCCt < 1:762840/68‑1 (MQ=255) ttAAACCACGTCTGGGGAACTAACGTGTATGTGGAAGACCGCACGGTCGATGTCCACATTCGTCGCCTGc < 1:96331/70‑1 (MQ=255) aaaCCACGTCTGGGGAACTAACGTGTATGTGGAAGACCGCACGGTCGATGTCCACATTCGTCGCCTGCGt > 1:635528/1‑70 (MQ=255) aaCCACGTCTGGGGAACTAACGTGTATGTGGAAGACCGCACGGTCGATGTCCACATTCGTCGCCt < 1:2589274/65‑1 (MQ=255) aaCCACGTCTGGGGAACTAACGTGTATGTGGAAGACCGCACGGTCGATGTCCACATTCGTCGCCt < 1:1235998/65‑1 (MQ=255) aaCCACGTCTGGGGAACTAACGTGTATGTGGAAGACCGCACGGTCGATGTCCACATTCGTCGCCt < 1:213798/65‑1 (MQ=255) aCCACGTCAGGGGAACTAACGTGTATGTGGAAGACCGCACGGTCg > 1:2220402/1‑45 (MQ=255) ccACGTCTGGGGAACTAACGTGTATGTGGAAGACCGCACGGTCGATGTCCACATTCGTCGCCTGc > 1:596913/1‑65 (MQ=255) ccACGTCTGGGGAACTAACGTGTATGTGGAAGACCGCACGGTCGATGTCCACATTCGTCGCCTGc > 1:2686889/1‑65 (MQ=255) ccACGTCTGGGGAACTAACGTGTATGTGGAAGACCGCACGGTCGATGTCCACATTCGTCGCCTGc > 1:442382/1‑65 (MQ=255) cACGTCTGGGGAACTAACGTGTATGTGGAAGACCGCACGGTCGAt > 1:1660560/1‑45 (MQ=255) gTCTGGGGAACTAACGTGTATGTGGAAGACCGCACGGTCGATGTCCACATTCGTCGCCTGCGTAAAGCACt > 1:566797/1‑71 (MQ=255) tCTGGGGAACTAACGTGTATGTGGAAGACCGCACGGTc < 1:2266497/38‑1 (MQ=255) cTGGGGAACTAACGTGTATGTGGAAGACCGCACGGTCGATGTCCACATTCGTCGCCTGCGTAAAGCACTg > 1:2022287/1‑70 (MQ=255) cTGGGGAACTAACGTGTATGTGGAAGACCGCACGGTCGATGTCCACATTCGTCGCCTGCGTAAAGCACTg > 1:1852896/1‑70 (MQ=255) tggAACTAACGTGTATGTGGAAGACCGCACGGTCGATGTCCACATTCGTCGCCTGCGTAAAGCACTGGAGc < 1:2809715/70‑1 (MQ=255) aCTAACGTGTATGTGGAAGACCGCACGGTCGATGTCCACATTCGTCGCCTGCGTAAAGCACTGGAGCCcgg > 1:683885/1‑71 (MQ=255) aCTAACGTGTATGTGGAAGACCGCACGGTCGATGTCCACATTCGTCGCCTGCGTAAAGCACTGGAGCCcgg > 1:3036887/1‑71 (MQ=255) cTAACGTGTATGTGGAAGACCGCACGGTCGATGTCCACATTCGTCGCCTGCGTAAAGCACTGGAGCCcggc < 1:2912376/71‑1 (MQ=255) cTAACGTGTATGTGGAAGACCGCACGGTCGATGTCCACATTCGTCGCCTGCGTAAAGCACTGGAGCCcggc < 1:398220/71‑1 (MQ=255) cTAACATGTATGTGGAAGACCGCACGGTCGATGTCCACATTCGTCGCCTGCGTAAAGCACTGGAGCCcggc < 1:379175/71‑1 (MQ=255) gtgtATGTGGAAGACCGCACGGTGGATGTCCACATTCGTCGCCTGCGTAAAGCACTGGAGCCCGGCGGGCa < 1:76193/71‑1 (MQ=255) tATGTGGAAGACCGCACGGTCGATGtccacatacacgttagttccccagacgtggtttaacagctgctcg > 1:2833908‑M2/1‑25 (MQ=255) tATGTGGAAGACCGCACGGTCGATGTCCACATTCGTCGCCTGCGTAAAGCACTGGa > 1:2973045/1‑56 (MQ=255) tATGTGGAAGACCGCACGGTCGATGTCCACATTCGTCGCCTGCGTAAAGCACTGGAGCCCGGCGGGCATg < 1:267054/70‑1 (MQ=255) aTGTGGAcatcgaccgtgcggtcttccacatacacgttagttccccagacgtggtttaacagctgctcgcg < 1:1182158‑M1/71‑65 (MQ=255) aTGTGGAAGACCGCACGGTCGATGTCCACATTCGTCGCCTGCGTaaa > 1:3378990/1‑47 (MQ=255) aTGTGGAAGACCGCACGGTCGATGTCCACATTCGTCGCCTGCGTaaa > 1:2857841/1‑47 (MQ=255) tgtgGAcatcgaccgtgcggtcttccacatacacgttagttccccagacgtggtttaacagctgctcgcgg < 1:265098‑M1/71‑66 (MQ=255) tgtgGAcatcgaccgtgcggtcttccacatacacgttagttccccagacgtggtttaaca > 1:258395‑M1/1‑6 (MQ=255) tgtgGAAGACCGCACGGTCGATGtccacatacacgttagttccccagacgtggtttaacagctgctcgcg < 1:3310944‑M2/70‑48 (MQ=255) gtgGAAGACCGCACGGTCGATGTCCACATTCGTCGCCTGCGTAAAGCACTGGAGCCCGGCGGGCATGAcc < 1:3684604/70‑1 (MQ=255) tgGAcatcgaccgtgcggtcttccacatacacgttagttccccagacgtggtttaacagctgctcgcggc > 1:3404091‑M1/1‑4 (MQ=255) tgGAcatcgaccgtgcggtcttccacatacacgttagttccccagacgtggtttaacagctgctcgcggc < 1:281097‑M1/70‑67 (MQ=255) tgGAAGACCGCACGGTCGATGTCCACATTCGTCGCCTGCGTAAAGCACTg < 1:2250853/50‑1 (MQ=255) gAcatcgaccgtgcggtcttccacatacacgttagttccccagacgtggtttaacagctgctcgcggctg > 1:3487756‑M1/1‑2 (MQ=255) acatcgaccgtgcggtcttccacatacacgttagttccccagacgtggtttaacagctgctcgcggctgta < 1:2409404‑M1/71‑71 (MQ=255) acatcgaccgtgcggtcttccacatacacgttagttccccagacgtggtttaacagctgctcgcggctgta < 1:562996‑M1/71‑71 (MQ=255) acatcgaccgtgcggtcttccacatacacgttagttccccagacgtggtttaacagccgcgagcagctgtt < 1:8845‑M1/71‑71 (MQ=255) aaGACCGCACGGTCGATGtccacatacacgttagttccccagacgtggtttaacagctgctcgcggctgta < 1:134360‑M2/71‑54 (MQ=255) | CGCATCCTGAGCGCGTGTACAGCCGCGAGCAGCTGTTAAACCACGTCTGGGGAACTAACGTGTATGTGGAAGACCGCACGGTCGATGTCCACATTCGTCGCCTGCGTAAAGCACTGGAGCCCGGCGGGCATGACCGCATG > minE/246113‑246252 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |