| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | 428834 = | 71 (1.200) | 5 (0.090) | 3/92 | NT | 7.6% | coding (1590/1947 nt) | nagE | fused N‑acetyl glucosamine specific PTS enzyme IICBA components |
| ? | minE | 428867 = | 57 (1.070) | coding (1623/1947 nt) | nagE | fused N‑acetyl glucosamine specific PTS enzyme IICBA components | |||||
GTGATGTCGTGGCACTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACC > minE/428764‑428904 | cgcgcctttttcggtttccaggcagaacgcgtggttggtgttgaagattttcacgattgtccctgcggctg > 1:2710944‑M1/71‑71 (MQ=255) tGATGTCGTGGCACTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGCGGTGGGTGACGGTGTGGCgg > 1:3603489/1‑71 (MQ=255) gcgcctttttcggtttccaggcagaacgcgtggttggtgttgaagattttcacgattgtccctgcggctgg > 1:2613502‑M1/70‑71 (MQ=255) gcctttttcggtttccaggcagaacgcgtggttggtgttgaagattttcacgattgtccctgcggctGGt < 1:3397873‑M1/3‑1 (MQ=255) cctttttcggtttccaggcagaacgcgtggttggtgttgaagattttcacgattgtccctgcggctGGTGa < 1:3119083‑M1/5‑1 (MQ=255) tCGTGGCACTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGCGGTGTGTGACGGTGTGGCGGTGaaa > 1:1421184/1‑71 (MQ=255) tCGTGGCACTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGCGGTGGGTGACGGTGTGGCGGTGaaa < 1:3216065/71‑1 (MQ=255) tCGTGGCACTGGATCAGGTTCCTGACGAAGCATTCGCCAGAAAAGCGGTGGGTGACGGTGTGGCGGTGaa > 1:3099289/1‑70 (MQ=255) cGTGGCACTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGCGGTGGGTGACGGTGTGGCGGTGAAAc > 1:162705/1‑71 (MQ=255) tGGCACTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCg < 1:1256772/71‑1 (MQ=255) tGGCACTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCg < 1:2178987/71‑1 (MQ=255) gCACTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCGa > 1:337924/1‑70 (MQ=255) gCACTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCGa < 1:591077/70‑1 (MQ=255) cTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCGa > 1:1964797/1‑67 (MQ=255) cTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCGa > 1:3236815/1‑67 (MQ=255) cTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCGa > 1:2254596/1‑67 (MQ=255) cTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGa < 1:2423306/71‑1 (MQ=255) ttccaggcagaacgcgtggttggtgttgaagattttcacgattgtccctgcggctGGTGa < 1:3647348‑M1/5‑1 (MQ=255) ttccaggcagaacgcgtggttggtgttgaagattttcacgattgtccctgcggctGGTGa < 1:2156230‑M1/5‑1 (MQ=255) tGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGa > 1:3619906/1‑70 (MQ=255) gATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATa < 1:920723/70‑1 (MQ=255) cAGGTTCCTGACGAAGCATTCGCCAGCAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAAt > 1:2542922/1‑71 (MQ=255) aGGTTCCTGACGAAGCATTCGCCAGCAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAAtc > 1:1975327/1‑71 (MQ=255) ggTTCCTGACGAAGCATTCGCCAGCAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAAtcg < 1:194980/71‑1 (MQ=255) ttCCTGACGAAGCATTCGCCAGCAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAAtcgtc < 1:1503928/71‑1 (MQ=255) tCCTGACGAAGCATTCGCCAGCAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAAtcgtcg > 1:1910505/1‑71 (MQ=255) aacgcgtggttggtgttgaagattttcacgattgtccctgcggctGGTGAAACCGACAGATAAAAtcgtcg < 1:2681112‑M1/26‑1 (MQ=255) aacgcgtggttggtgttgaagattttcacgattgtccctgcggctGGTGAAACCGACAGATAAAAtcgtcg < 1:1816638‑M1/26‑1 (MQ=255) ccTGACGAAGCATTCGCCAGCAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAAtcgtcg > 1:2830200/1‑70 (MQ=255) ccTGACGAAGCATTCGCCAGCAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAAtcgtcg < 1:2600865/70‑1 (MQ=255) ccTGACGAAGCATTCGCCAGCAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAAtcgtcg > 1:154328/1‑70 (MQ=255) ccTGACGAAGCATTCGCCAGCAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAAtcgtcg > 1:1934617/1‑70 (MQ=255) acgcgtggttggtgttgaagattttcacgattgtccctgcggctgg < 1:3652777‑M1/2‑1 (MQ=255) acgcgtggttggtgttgaagattttcacgattgtccctgcggctgg < 1:2237260‑M1/2‑1 (MQ=255) acgcgtggttggtgttgaagattttcacgattgtccctgcggctgg < 1:410634‑M1/2‑1 (MQ=255) cTGACGAAGCATTCGCCAGCAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAATcgtcgt < 1:2265627/70‑1 (MQ=255) cTGACGAAGCATTCGCCAGCAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAATcgtcgt < 1:2835639/70‑1 (MQ=255) cTGACGAAGCATTCGCCAGCAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAATcgtcgt < 1:1264649/70‑1 (MQ=255) gACGAAGCATTCGCCAGCAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTAt > 1:3240528/1‑70 (MQ=255) aCGAAGCATTCGCCAGCAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCa > 1:602841/1‑71 (MQ=255) cGAAGCATTCGCCAGCAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCAc > 1:2108951/1‑71 (MQ=255) cGAAGCATTCGCCAGCAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCAc > 1:771487/1‑71 (MQ=255) gttggtgttgaagattttcacgattgtccctgcggctGGTGAAACCGACAGATAAAATCGTCGTATCAcc > 1:1722688‑M1/38‑70 (MQ=255) gttggtgttgaagattttcacgattgtccctgcggctGGTGAAACCGACAGATAAAATCGTCGTATCAcc > 1:3053189‑M1/38‑70 (MQ=255) aaGCATTCGCCAGCAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCa < 1:365786/71‑1 (MQ=255) aGCATTCGCCAGCAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTa > 1:136778/1‑64 (MQ=255) aGCATTCGCCAGCAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAg > 1:3184166/1‑71 (MQ=255) aGCATTCGCCAGCAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAg > 1:965929/1‑71 (MQ=255) ttCGCCAGCAAAGCGGTGGGTGACGGTGTGGCGGt > 1:3643299/1‑35 (MQ=255) ttCGCCAGCAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCg > 1:1655459/1‑70 (MQ=255) ttCGCCAGCAAAGCAGTGGGTGACGGTGTGGCGGt > 1:1902068/1‑35 (MQ=255) gCCAGCAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAgg > 1:2662408/1‑71 (MQ=255) cAGCAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAggg < 1:388417/70‑1 (MQ=255) aGCAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGAt > 1:3594203/1‑42 (MQ=255) aGCAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGAt > 1:1617701/1‑42 (MQ=255) aGCAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGa > 1:1899330/1‑70 (MQ=255) gCAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGAc > 1:3099934/1‑70 (MQ=255) gCAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGAc > 1:1749360/1‑70 (MQ=255) gCAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGAc > 1:2823990/1‑70 (MQ=255) cAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCGa > 1:804769/1‑35 (MQ=255) cAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACaa > 1:2142536/1‑71 (MQ=255) attttcacgattgtccctgcggctGGTGAAACCGACAGATAAAATCGTCGTATCa < 1:409330‑M1/31‑1 (MQ=255) aaaGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAAt > 1:2072445/1‑71 (MQ=255) aaaGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAAt > 1:1559166/1‑71 (MQ=255) aaaGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAAt > 1:3262510/1‑71 (MQ=255) aaGCGGTGGGTGACGGTGTGGCGGTGAAACCGACatat < 1:2765014/38‑1 (MQ=255) aaGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGAt < 1:3522017/38‑1 (MQ=255) aaGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAggg < 1:1171789/65‑1 (MQ=255) aaGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAggg < 1:753097/65‑1 (MQ=255) gCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGt < 1:3240987/71‑1 (MQ=255) gCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGt < 1:1395494/71‑1 (MQ=255) gtgggtgACGGTGTGGCGGTGAAACCGACAGATaaa < 1:323706/36‑1 (MQ=255) gtgggtgACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACaa < 1:3584014/64‑1 (MQ=255) gtgggtgACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACaa < 1:1046892/64‑1 (MQ=255) gtgggtgACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGa > 1:1778095/1‑70 (MQ=255) gtgggtgACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGa > 1:3642107/1‑70 (MQ=255) tgggtgACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGaaa < 1:3578066/71‑1 (MQ=255) gggtgACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGa > 1:1108258/1‑59 (MQ=255) tgACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCt > 1:3257971/1‑71 (MQ=255) tgACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCt < 1:3718383/71‑1 (MQ=255) tgACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCt < 1:3222461/71‑1 (MQ=255) aCGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCtt > 1:490666/1‑70 (MQ=255) aCGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTc < 1:95572/71‑1 (MQ=255) aCGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTc < 1:883550/71‑1 (MQ=255) cGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTc > 1:3022844/1‑70 (MQ=255) cGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTCa < 1:3482786/71‑1 (MQ=255) ggTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTCaa > 1:37261/1‑71 (MQ=255) gtgtGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTc < 1:2013605/68‑1 (MQ=255) tgGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTCAACacc < 1:2994817/71‑1 (MQ=255) tgGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTCAACacc < 1:1281281/71‑1 (MQ=255) gCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTCAaca > 1:572717/1‑67 (MQ=255) gCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTCAaca > 1:568308/1‑67 (MQ=255) gCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTCAaca > 1:144696/1‑67 (MQ=255) cGGTAAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTCAACaccaac > 1:2428337/1‑71 (MQ=255) GGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTCAACaccaacc > 1:2729426‑M1/1‑71 (MQ=255) GGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTCAACaccaacc > 1:3217018‑M1/1‑71 (MQ=255) | GTGATGTCGTGGCACTGGATCAGGTTCCTGACGAAGCATTCGCCAGCAAAGCGGTGGGTGACGGTGTGGCGGTGAAACCGACAGATAAAATCGTCGTATCACCAGCCGCAGGGACAATCGTGAAAATCTTCAACACCAACC > minE/428764‑428904 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |