| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 627360 | 40 (0.680) | 6 (0.120) | 5/88 | NT | 13.4% | intergenic (+40/‑12) | ycaQ/ycaR | conserved hypothetical protein/conserved hypothetical protein |
| ? | minE | = 627371 | 43 (0.840) | intergenic (+51/‑1) | ycaQ/ycaR | conserved hypothetical protein/conserved hypothetical protein | |||||
ACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAG‑ATTTATGCATTCATAACCCGATCCATCTGGAGGAACTATGGATCATCGTCTGCTTGAAATCATTGCCTGCCCGGTTTGCAACGGAAAACTTTGGT > minE/627291‑627429 | aCCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAG‑ATTTATGCATTCATAACCCGATCCATc > 1:1665866/1‑71 (MQ=255) ccGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAG‑ATTTATGCATTCATAACCCGATCCATCt > 1:3219534/1‑71 (MQ=255) cGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAG‑ATTTATGCATTCATAACCCGATCCATCTg < 1:929174/71‑1 (MQ=255) ggCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAG‑ATTTATGCATTCATAACCCCATCCATCTgg < 1:3420721/71‑1 (MQ=255) ggAAATAGACCCCGTCGCATAAATGATTATGATAAG‑ATTTATGCATTCATAACCCGATCCATCTggagga < 1:3608028/70‑1 (MQ=255) ggAAATAGACCCCGTCGCATAAATGATTATGATAAG‑ATTTATGCATTCATAACCCGATCCATCTggagg < 1:2473665/69‑1 (MQ=255) gAAATAGACCCCGTCGCATAAATGATTATGATAAG‑ATTTATGCATTCATAACCCGATCCATagttcctc > 1:1063696‑M1/1‑61 (MQ=255) aTAGACCCCGTCGCATAAATGATTATGATAAG‑ATTTATGCATTCATAACCCGATCCATCTGGAGGAACTat < 1:1923097‑M2/71‑3 (MQ=255) tAGACCCCGTCGCATAAATGATTATGATAAG‑ATTTATGCATTCATAACCCGATCCATCTGGAGGAACTatg > 1:2443649‑M2/1‑68 (MQ=255) tAGACCCCGTCGCATAAATGATTATGATAAG‑ATTTATGCATTCATAACCCGATCCATCTGGAGGAACTatg < 1:683955‑M2/71‑4 (MQ=255) gACCCCGTCGCATAAATGATTATGATAAG‑ATTTATGCATTCATAACCCGATCCATCTGGAGGAACTatgga < 1:1599795‑M2/71‑6 (MQ=255) cccGTCGCATAAATGATTATGATAAG‑ATTTATGCATTCATAACCCGATCCATagttcctccagatgg < 1:2583789‑M1/67‑16 (MQ=255) cccGTCGCATAAATGATTATGATAAG‑ATTTATGCATTCATAACCCGATCCATCTGGAGGGACTat < 1:143547‑M2/65‑3 (MQ=255) cccGTCGCATAAATGATTATGATAAG‑ATTTATGCATTCATAACCCGATCCATCTGGAGGAACTat < 1:2555918‑M2/65‑3 (MQ=255) cccGTCGCATAAATGATTATGATAAG‑ATTTATGCATTCATAACCCGATCCATCTGGAGGAACTATGGatca < 1:2825161/71‑1 (MQ=255) cGTCGCATAAATGATTATGATAAG‑ATTTATGCATTCATAACCCGATCCATCTGGAGGAACTATGGatcatc > 1:3149333/1‑71 (MQ=255) tCGCATAAATGATTATGATAAG‑ATTTATGCATTCATAACCCGATCCATagttcatccagatggatcgggtt < 1:3013362‑M1/71‑24 (MQ=255) tCGCATAAATGATTATGATAAG‑ATTTATGCATTCATAACCCGATCCATCTGGAGGAACTATGGATCATCGt < 1:260847/71‑1 (MQ=255) tCGCATAAATGATTATGATAAG‑ATTTATGCATTCATAACCCGATCCATCTGGAGGAACTATGGATCATCGt > 1:3530651/1‑71 (MQ=255) tgCATAAAT‑CTTATCATAATAATTTATGCATTCATAACCCGATCCATCTGGAGGAACTATGGATAATCGTc > 1:3435007/2‑71 (MQ=21) gCATAAATGATTATGATAAG‑ATTTATGCATTCATAACCCGATCCATCTGGAGGAACTATGGATCATCGTCt > 1:3268074/1‑71 (MQ=255) aTAAATGATTATGATAAG‑ATTTATGCATTCATAACCCGATCCATCTGGAGGAACTATGGATCATCGTCTGc < 1:2279909/71‑1 (MQ=255) aTAAATGATTATGATAAG‑ATTTATGCATTCATAACCCGATCCATCTGGAGGAACTATGGATCATCGTCTGc < 1:34842/71‑1 (MQ=255) aaaTGATTATGATAAG‑ATTTATGCATTCATAACCCGATCCATCTGGAGGAACTATGGATCATCGTCTGc < 1:2757554/69‑1 (MQ=255) aaaTGATTATGATAAG‑ATTTATGCATTCATAACCCGATCCATCTGGAGGAACTATGGATCATCGTCTGc < 1:1825199/69‑1 (MQ=255) aaaTGATTATGATAAG‑ATTTATGCATTCATAACCCGATCCATCTGGAGGAACTATGGATCATCGTCTGCtt > 1:539128/1‑71 (MQ=255) aaTGATTATGATAAG‑ATTTATGCATTCATAACCCGATCCATCTGGAGGAACTATGGATCATCGTCTGCtt < 1:3308910/70‑1 (MQ=255) tGATTATGATAAG‑ATTTATGCATTCATAACCCGATCCATCTGGAGGAACTATGGATCATCGTCTGCTTGaa < 1:2171841/71‑1 (MQ=255) tGATTATGATAAG‑ATTTATGCATTCATAACCCGATCCATCTGGAGGAACTATGGATCATCGTCTGCTTGa > 1:3693848/1‑70 (MQ=255) gATTATGATAAG‑ATTTATGCATTCATAACCCGATCCATagttcctccagatgga < 1:223695‑M1/54‑17 (MQ=255) gATTATGATAAG‑ATTTATGCATTCATAACCCGATCCATCTGGAGGAACTATGGATCATCGTCTGCTTGaaa > 1:1331984/1‑71 (MQ=255) aTTATGATAAG‑ATTTATGCATTCATAACCCGATCCATCTGGAGGAACTATGGATCATCGTCTGCTTGAAAt > 1:2969654/1‑71 (MQ=255) ttATGATAAG‑ATTTATGCATTCATAACCCGATCCATagttcctccagatggatc > 1:3681747‑M1/1‑36 (MQ=255) ttATGATAAG‑ATTTATGCATTCATAACCCGATCCATagttcctccagatggatc > 1:1772563‑M1/1‑36 (MQ=255) aTGATAAG‑ATTTATGCATTCATAACCCGATCCATCTGGAGGAACTATGGATCATCGTCTGCTTGAAATCa < 1:76302/70‑1 (MQ=255) aTGATAAG‑ATTTATGCATTCATAACCCGATCCATCTGGAGGAACTATGGATCATCGTCTGCTTGAAATCa < 1:1493795/70‑1 (MQ=255) tGATAAG‑ATTTATGCATTCATAACCCGATCCATCTGGAGGAACTATGGATCATCGTCTGCTTGAAATCAtt < 1:3627797/71‑1 (MQ=255) gATAAG‑ATTTATGCATTCATAACCCGATCCATCTGGAGGAACTatggat > 1:2845275‑M2/1‑43 (MQ=255) gATAAG‑ATTTATGCATTCATAACCCGATCCATCTGGAGGAACTatggat > 1:31156‑M2/1‑43 (MQ=255) aaG‑ATTTATGCATTCATAACCCGATCCATCTGGAGGAACTATGGATCATCGTCTGCTTg < 1:3182805/59‑1 (MQ=255) aG‑ATTTATGCATTCATAACCCGATCCATCTGGAGGAACTa > 1:244511‑M2/1‑39 (MQ=255) g‑ATTTATGCATTCATAACCCGATCCATCTGGAGGAACTATGGATCATCGTCTGCTTGAAATCATtgcctgc < 1:2903636/71‑1 (MQ=255) aTTTATGCATTCATAACCCGATCCATCTGGAGGAACTatg < 1:2825406‑M2/40‑4 (MQ=255) aTTTATGCATTCATAACCCGATCCATCTGGAGGAACTatg < 1:1633154‑M2/40‑4 (MQ=255) aTTTATGCATTCATAACCCGATCCATCTGGAGGAACTatg < 1:604930‑M2/40‑4 (MQ=255) aTTTATGCATTCATAACCCGATCCATCTGGAGGAACTATGGATCATCGTCTGCTTGAAATCATtgcctgcc > 1:93039/1‑71 (MQ=255) tttATGCATTCATAACCCGATCCATCTGGAGGAACTATGGATCATCGTCTGCTTGAAATCATTGCCTGccc < 1:2744825/71‑1 (MQ=255) tATGCATTCATAACCCGATCCATCTGGAGGAACTATGGATCATCGTCTGCTTGAAATCATTGCCTGCCCg < 1:2780380/70‑1 (MQ=255) tGCATTCATAACCCGATCCATCTGGAGGAACTATGGATCATCGTCTGCTTGAAATCATTGCCTGCCCGGtt > 1:3450125/1‑71 (MQ=255) tGCATTCATAACCCGATCCATCTGGAGGAACTATGGATCATCGTCTGCTTGAAATCATTGCCTGCCCGGtt > 1:3141349/1‑71 (MQ=255) gCATTCATAACCCGATCCATCTGGAGGAACTatggat > 1:1008328‑M2/1‑31 (MQ=255) ttCATAACCCGATCCATCTGGAGGAACTATGGatcatc < 1:3364641/38‑1 (MQ=255) ttCATAACCCGATCCATCTGGAGGAACTATGGATCATCGTCTGCTTGAAATCATTGCCTGCCCGGTTTGCa < 1:785177/71‑1 (MQ=255) cATAACCCGATCCATCTGGAGGAACTATGGatcatc > 1:1502862/1‑36 (MQ=255) cATAACCCGATCCATCTGGAGGAACTATGGATCATCGTCTGCTTGAAATCa > 1:2115650/1‑51 (MQ=255) cATAACCCGATCCATCTGGAGGAACTATGGATCATCGTCTGCTTGAAATCATTGCCTGCCCGGTTTGCaa < 1:3139907/70‑1 (MQ=255) cATAACCCGATCCATCTGGAGGAACTATGGATCATCGTCTGCTTGAAATCATTGCCTGCCCGGTTTGCaa < 1:2020337/70‑1 (MQ=255) aTAACCCGATCCATCTGGAGGAACTATGGATCATCGTCTGCTTGAAATCATTGCCTGCCCGGTTTGCAACg > 1:1561034/1‑71 (MQ=255) aaCCCGATCCATCTGGATGAACTatggatcgggttatgaatgcataaatcttatcataatcatttatgcga < 1:3013362‑M2/71‑49 (MQ=255) aCCCGATCCATCTGGAGGAACTATGGATCATCGTCTGCTTGAAATCATTGCCTGCCCGGTTTGCAACGGaa < 1:2184651/71‑1 (MQ=255) cccGATCCATCTGGAGGAACTATGGATCATCGTCTGCTTGAAAt < 1:2341969/44‑1 (MQ=255) cccGATCCATCTGGAGGAACTATGGATCATCGTCTGCTTGAAAt < 1:2775893/44‑1 (MQ=255) cGATCCATCTGGAGGAACTATGGATCATCGTCTGCTTGAAAt < 1:3187405/42‑1 (MQ=255) gATCCATCTGGAGGAACTatggatcgggttatgaatgcataaatcttatcataa > 1:3681747‑M2/1‑18 (MQ=255) gATCCATCTGGAGGAACTatggatcgggttatgaatgcataaatcttatcataa > 1:1772563‑M2/1‑18 (MQ=255) aTCCATagttcctccagatggatcgggttatgaatgcataaatcttatc > 1:2845275‑M1/1‑6 (MQ=255) aTCCATagttcctccagatggatcgggttatgaatgcataaatcttatc > 1:31156‑M1/1‑6 (MQ=255) aTCCATagttcctccagatggatcgggttatgaatgc > 1:1008328‑M1/1‑6 (MQ=255) aTCCATCTGGAGGAACTATGGATCATCGTCTGCTTGAAATCATTGCCTGCCCGGTTTGCAACGGAAAAc < 1:3307835/69‑1 (MQ=255) tCCATagttcctccagatggatcgggttatgaatgcataaatcttatcataatcatttatgcgacggggtc < 1:1599795‑M1/71‑67 (MQ=255) tCCATCTGGAGGAACTatggatcgggttatgaatgcataaatcttatcataatc < 1:223695‑M2/54‑39 (MQ=255) tCCATCTGGAGGAACTATGGATCATCGTCTGCTTGAAATCATTGCCTGCCCGGTTTGCAACGGAAAACttt > 1:3603274/1‑71 (MQ=255) tCCATCTGGAGGAACTATGGATCATCGTCTGCTTGAAATCATTGCCTGCCCGGTTTGCAACGGAAAACttt > 1:3381272/1‑71 (MQ=255) ccATCTGGAGGAACTatggatcgggttatgaatgcataaatcttatcataatcatttatgcgacggg < 1:2583789‑M2/67‑53 (MQ=255) ccATCTGGAGGAACTATGGATCATCGTCTGCTTGAAATCATTGCCTGCCCGGTTTGCAACGGAAAACTTTg > 1:3525193/1‑71 (MQ=255) ccATCTGGAGGAACTATGGATCATCGTCTGCTTGAAATCATTGCCTGCCCGGTTTGCAACGGAAAACTTTg > 1:3057320/1‑71 (MQ=255) cATagttcctccagatggatcgggttatgaatgcataaatcttatcataatcatttatgcgacggggtcta > 1:2443649‑M1/1‑3 (MQ=255) cATagttcctccagatggatcgggttatgaatgcataaatcttatcataatcatttatgcgacggggtcta < 1:683955‑M1/71‑69 (MQ=255) cATagttcctccagatggatcgggttatgaatgcataaat < 1:1633154‑M1/40‑38 (MQ=255) cATagttcctccagatggatcgggttatgaatgcataaat < 1:604930‑M1/40‑38 (MQ=255) cATagttcctccagatggatcgggttatgaatgcataaat < 1:2825406‑M1/40‑38 (MQ=255) aTagttcctccagatggatcgggttatgaatgcataaatcttatcataatcatttatgcgacggggtctat < 1:1923097‑M1/71‑70 (MQ=255) aTagttcctccagatggatcgggttatgaatgcataaatcttatcataatcatttatgcgacggg < 1:2555918‑M1/65‑64 (MQ=255) aTagtccctccagatggatcgggttatgaatgcataaatcttatcataatcatttatgcgacggg < 1:143547‑M1/65‑64 (MQ=255) tagttcctccagatggatcgggttatgaatgcataaatct > 1:244511‑M1/1‑1 (MQ=255) | ACCGGCTGGGAAATAGACCCCGTCGCATAAATGATTATGATAAG‑ATTTATGCATTCATAACCCGATCCATCTGGAGGAACTATGGATCATCGTCTGCTTGAAATCATTGCCTGCCCGGTTTGCAACGGAAAACTTTGGT > minE/627291‑627429 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |