| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | 1928403 = | 70 (1.190) | 8 (0.150) | 3/92 | NT | 10.1% | coding (817/1419 nt) | araE | arabinose transporter |
| ? | minE | 1928438 = | 80 (1.500) | coding (782/1419 nt) | araE | arabinose transporter | |||||
GTTGTTCTGTGGTCGTAAAGCCCGCCATTTTGAAGATACGCGGCGCGTAGTACATGATGATGTTCATACCGGTAAACTGCTGCATCGCCTGCAACAACATACCGAGAAACACAGCACGACGGACGTTACGGTTGATCT > minE/1928334‑1928471 | tttgttCTGTGGTCGTAAAGCCCGCCATTTTGAAGATACGCGGCGCGTAGTACATGATGATGTTCATACCg < 1:2103134/70‑1 (MQ=255) ttgttCTGTGGTCGTAAAGCCCGCCATTTTGAAGATACGCGGCGCGTAGTACATGATGATGTTCATACCgg < 1:2885878/71‑1 (MQ=255) ctgaagttaaaacagggcggttgggcactgtttaagatcaaccgtaacgtccgtcgtgctgtgtttctCg > 1:550181‑M1/69‑70 (MQ=255) ttCTGTGGTCGTAAAGCCCGCCATTTTGAAGATACGCGGCGCGTAGTACATGATGATGTTCATACCGGTa < 1:3512305/70‑1 (MQ=255) ttCTGTGGTCGTAAAGCCCGCCATTTTGAAGATACGCGGCGCGTAGTACATGATGATGTTCATACCGGTa < 1:3078059/70‑1 (MQ=255) tgGTCGTAAAGCCCGCCATTTTGAAGATACGCGGCGCGTAGTACATGATGATGTTCATACCGGTAAAct < 1:2384431/69‑1 (MQ=255) acagggcggttgggcactgtttaagatcaaccgtaacgtccgtcgtgctgtgtttctCgg > 1:3364644‑M1/58‑60 (MQ=255) cagggcggttgggcactgtttaagatcaaccgtaacgtccgtcgtgctgtgtttctCGGt < 1:22176‑M1/4‑1 (MQ=255) gTAAAGCCCGCCATTTTGAAGATACGCGGCGCGTAGTACATGATGATGTTCATACCGGTaaa > 1:1109730/1‑62 (MQ=255) gTAAAGCCCGCCATTTTGAAGATACGCGGCGCGTAGTACATGATGATGTTCATACCGGTAAACTGCTGCa < 1:1250475/70‑1 (MQ=255) gTAAAGCCCGCCATTTTGAAGATACGCGGCGCGTAGTACATGATGATGTTCATACCGGTAAACTGCTGCa < 1:913248/70‑1 (MQ=255) gTAAAGCCCGCCATTTTGAAGATACGCGGCGCGTAGTACATGATGATGTTCATACCGGTAAACTGCTGCa < 1:3563346/70‑1 (MQ=255) gTAAAGCCCGCCATTTTGAAGATACGCGGCGCGTAGTACATGATGATGTTCATACCGGTAAACTGCTGCa < 1:1867077/70‑1 (MQ=255) gTAAAGCCCGCCATTTTGAAGATACGCGGCGCGTAGTACATGATGATGTTCATACCGGTAAACTGCTGCa < 1:169431/70‑1 (MQ=255) gTAAAGCCCGCCATTTTGAAGATACGCGGCGCGTAGTACATGATGATGTTCATACCGGTAAACTGCTGCAt < 1:2842114/71‑1 (MQ=255) aaaGCCCGCCATTTTGAAGATACGCGGCGCGTAGTACATGATGATGTTCATACCGGTAAACTGCTGCAt < 1:2864247/69‑1 (MQ=255) aaaGCCCGCCATTTTGAAGATACGCGGCGCGTAGTACATGATGATGTTCATACCGGTAAACTGCTGCATCg > 1:1014458/1‑71 (MQ=255) aaaGCCCGCCATTTTGAAGATACGCGGCGCGTAGTACATGATGATGTTCATACCGGTAAACTGCTGCATCg > 1:1522908/1‑71 (MQ=255) aaGCCCGCCATTTTGAAGATACGCGGCGCGTAGTACATGATGATGTTCATACCGGTAAACTGCTGCATCGc > 1:1213187/1‑71 (MQ=255) cGCCATTTTGAAGATACGCGGCGCGTAGTACATGATGATGTTCATACCGGTAAACTGCTGCATCGcc < 1:81996/67‑1 (MQ=255) cGCCATTTTGAAGATACGCGGCGCGTAGTACATGATGATGTTCATACCGGTAAACTGCTGCATCGcc < 1:141534/67‑1 (MQ=255) cGCCATTTTGAAGATACGCGGCGCGTAGTACATGATGATGTTCATACCGGTAAACTGCTGCATCGcc < 1:3552457/67‑1 (MQ=255) cGCCATTTTGAAGATACGCGGCCCGTAGTACATGATGATGTTCATACCGGTAAACTGCTGCATCGcc < 1:19401/67‑1 (MQ=255) cGCCATTTTGAAGATAAGCGGCGCGTAGTACATGATGATGTTCATACCGGTAAACTGCTGCATCGcc < 1:594805/67‑1 (MQ=255) ccATTTTGAAGATACGCGGCGCGTAGTACATGATGATGTTCATACCGGTAAACTGCTGCATCGCCTGcaa > 1:1547397/1‑70 (MQ=255) ttttTAAGATACGCGGCGCGTAGTACATGATGATGTTCATACCGGTAAActgc < 1:1562471/53‑1 (MQ=255) ttttGAAGATACGCGGCGCGTAGTACATGATGATGTTCATACCGGTAAActgc < 1:3364341/53‑1 (MQ=255) ttttGAAGATACGCGGCGCGTAGTACATGATGATGTTCATACCGGTAAActgc < 1:579643/53‑1 (MQ=255) tttGAAGATACGCGGCGCGTAGTACATGATGATGTTCATACCGGTa < 1:3033577/46‑1 (MQ=255) tGAAGATACGCGGCGCGTAGTACATGATGATGTTCATACCGGTAAACTGCTGCATCGCCTGCAACAACAt < 1:2255635/70‑1 (MQ=255) tttaagatcaaccgtaacgtccgtcgtgctgtgtttctCGGTAAACTGCTGCATCGCCTGCAACAACAt > 1:2347658‑M1/39‑69 (MQ=255) tctgatcaaccgtaacgtccgtcgtgctgtgtttctCGGTAAACTGCTGCATCGCCTGCAACAACATAcc > 1:1483704‑M1/37‑70 (MQ=255) aGATACGCGGCGCGTAGTACATGATGATGTTCATACCGGTAAGCTGCTGCATCGCCt > 1:379740/1‑57 (MQ=255) aGATACGCGGCGCGTAGTACATGATGATGTTCATACCGGTAAACTGCTGCATCGCCTGCAACAACATACCg < 1:79532/71‑1 (MQ=255) aGATACGCGGCGCGTAGTACATGATGATGTTCATACCGGTAAACTGCTGCATCGCCTGCAACAACATACCg < 1:743485/71‑1 (MQ=255) gATACGCGGCGCGTAGTACATGATGATGTTCATACCGGTAAACTGCTGCATCGCCTGCAACAACATACCga < 1:1812120/71‑1 (MQ=255) aTACGCGGCGCGTAGTACATGATGATGTTCATACCGGTAAACTGCTGCATCGCCTGCAACAACAt < 1:3688918/65‑1 (MQ=255) tACGCGGCGCGTAGTACATGATGATGTTCATACCGGTAAACTGCTGCATCGCCTGCAACAACATACCgaga < 1:1530468/71‑1 (MQ=255) aCGCGGCGCGTAGTACATGATGATGTTCATACCGGTAAActgc > 1:3175711/1‑43 (MQ=255) aCGCGGCGCGTAGTACATGATGATGTTCATACCGGTAAACTGCTGCATCGCCTGCAACAACATa > 1:23230/1‑64 (MQ=255) aCGCGGCGCGTAGTACATGATGATGTTCATACCGGTAAACTGCTGCATCGCCTGCAACAACATa > 1:1532813/1‑64 (MQ=255) aCGCGGCGCGTAGTACATGATGATGTTCATACCGGTAAACTGCTGCATCGCCTGCAACAACATa > 1:617456/1‑64 (MQ=255) aCGCGGCGCGTAGTACATGATGATGTTCATACCGGTAAACTGCTGCATCGCCTGCAACAACATa > 1:3411608/1‑64 (MQ=255) cgcgGCGCGTAGTACATGATGATGTTCATACCGGTAAACTGCTGCATCGc > 1:3669481/1‑50 (MQ=255) cgcgGCGCGTAGTACATGATGATGTTCATACCGGTAAACTGCTGCATCGc > 1:548561/1‑50 (MQ=255) cgcgGCGCGTAGTACATGATGATGTTCATACCGGTAAACTGCTGCATCGCCTGCAACAACATACCGAGaaa < 1:1987003/71‑1 (MQ=255) gcggcgCGTAGTACATGATGATGTTCATACCGGTAAACtgctgc < 1:767653/44‑1 (MQ=255) caaccgtaacgtccgtcgtgctgtgtttctCGGTAAACTGCTGCATCGCCTGCAACAACATACCga < 1:3353295‑M1/36‑1 (MQ=255) caaccgtaacgtccgtcgtgctgtgtttctCGGTAAACTGCTGCATCGCCTGCAACAACATACCga < 1:145774‑M1/36‑1 (MQ=255) aaaccgtaacgtccgtcgtgctgtgtttctCGGTAAACTGCTGCATCGCCTGCAACAACATACCga < 1:1786970‑M1/36‑1 (MQ=255) cggcgCGTAGTACATGATGATGTTCATACCGGTAAACTGCTGCATCGCCTGca < 1:2442395/53‑1 (MQ=255) cggcgCGTAGTACATGATGATGTTCATACCGGTAAACTGCTGCATCGCCTGCAACAACATACCGAGAAaca > 1:97903/1‑71 (MQ=255) cggcgCGTAGTACATGATGATGTTCATACCGGTAAACTGCTGCATCGCCTGCAACAACATACCGAGAAaca > 1:2261631/1‑71 (MQ=255) cggcgCGTAGTACATGATGATGTTCATACCGGTAAACTGCTGCATCGCCTGCAACAAC‑TACCGAGAAaca > 1:1179324/1‑70 (MQ=255) ggcgCGTAGTACATGATGATGTTCATACCGGTAAACTGCTGCATCGCCTGCAACAACATACCGAGAAaca > 1:3460893/1‑70 (MQ=255) ggcgCGTAGTACATGATGATGTTCATACCGGTAAACTGCTGCATCGCCTGCAACAACATACCGAGAAaca > 1:3383742/1‑70 (MQ=255) gcgcGTAGTACATGATGATGTTCATACCGGTAAACTGCTGCATCGCCTGCAACAACATACCgaga < 1:2409512/65‑1 (MQ=255) gcgcGTAGTACATGATGATGTTCATACCGGTAAACTGCTGCATCGCCTGCAACAACATACCGAGAAAcaca < 1:1321682/71‑1 (MQ=255) cgcgTAGTACATGATGATGTTCATACCGGTAAACTGCTGCATCGCCTGCAACAACATACCGAGAAACACAg < 1:2547683/71‑1 (MQ=255) taacgtccgtcgtgctgtgtttctCGGTAAACTGCTGCATCGCCTGCAACAACATACCg < 1:2544062‑M1/35‑1 (MQ=255) taacgtccgtcgtgctgtgtttctCGGTAAACTGCTGCATCGCCTGCAACAACATACCg < 1:1926226‑M1/35‑1 (MQ=255) taacgtccgtcgtgctgtgtttctCGGTAAACTGCTGCATCGCCTGCAACAACATACCg < 1:2162469‑M1/35‑1 (MQ=255) gtagtaCATGATGATGTTCATACCGGTAAACTGCTGCATCGCCTGCAACAACATACCGAGAAACACAGCac > 1:1337710/1‑71 (MQ=255) gtaCATGATGATGTTCATACCGGTAAACTGCTGCATCGCCTGCAACAACATACCGAGAAACACAGCacga < 1:1535279/70‑1 (MQ=255) aCATGATGATGTTCATACCGGTAAACTGCTGCATCGCCTGc < 1:2690190/41‑1 (MQ=255) cATGATGATGTTCATACCGGTAAACTGCTGCATCGCCTg > 1:1438457/1‑39 (MQ=255) cATGATGATGTTCATACCGGTAAACTGCTGCATCGCCTg > 1:1847102/1‑39 (MQ=255) cATGATGATGTTCATACCGGTAAACTGCTGCATCGCCTg > 1:547464/1‑39 (MQ=255) cATGATGATGTTCATACCGGTAAACTGCTGCATCGCCTGCAACAACATACCg > 1:852304/1‑52 (MQ=255) cATGATGATGTTCATACCGGTAAACTGCTGCATCGCCTGCAACAACATACCGAGAAACACAGCACgacgga > 1:1403926/1‑71 (MQ=255) cATGATGATGTTCATACCGGTAAACTGCTGCATCGCCTGCAACAACATACCGAGAAACACAGCACgacgga > 1:1681303/1‑71 (MQ=255) cATGATGATGTTCATACCGGTAAACTGCTGCATCGCCTGCAACAACATACCGAGAAACACAGCACgacgga > 1:2050436/1‑71 (MQ=255) cATGATGATGTTCATACCGGTAAACTGCTGCATCGCCTGCAACAACATACCGAGAAACACAGCACgacgga > 1:1008736/1‑71 (MQ=255) atgatgatgTTCATACCGGTAAACTGCTGCATCGCCTGCAACAACATACCGAGAAACACAGCACgacggac > 1:342889/1‑71 (MQ=255) atgatgTTCATACCGGTAAACTGCTGCATCGCCTGCAACAACATACCGAGAAacac > 1:2901423/1‑56 (MQ=255) atgatgTTCATACCGGTAAACTGCTGCATCGCCTGCAACAACATACCGAGAAACACAGCacgacg > 1:966508/1‑65 (MQ=255) atgatgTTCATACCGGTAAACTGCTGCATCGCCTGCAACAACATACCGAGAAACACAGCACGACGGACGt > 1:3733633/1‑70 (MQ=255) atgatgTTCATACCGGTAAACTGCTGCATCGCCTGCAACAACATACCGAGAAACACAGCACGACGGACGt > 1:2499642/1‑70 (MQ=255) atgatgTTCATACCGGTAAACTGCTGCATCGCCTGCAACAACATACCGAGAAACAAAGCACGACGGACGt > 1:2800540/1‑70 (MQ=255) tgatgTTCATACCGGTAAACTGCTGCATCGCCTGCAACAACATACCGAGAAACACAGCACGACGGACGTTa > 1:133667/1‑71 (MQ=255) tgTTCATACCGGTAAACTGCTGCATCGCCTGCAACAACATACCGAGAAACACAGCACGACGGACGt < 1:2032471/66‑1 (MQ=255) tgTTCATACCGGTAAACTGCTGCATCGCCTGCAACAACATACCGAGAAACACAGCACGACGGACGt < 1:1094331/66‑1 (MQ=255) tgTTCATACCGGTAAACTGCTGCATCGCCTGCAACAACATACCGAGAAACACAGCACGACGGACGt < 1:3131897/66‑1 (MQ=255) gTTCATACCGGTAAACTGCTGCATCGCCTGCAACAACATACCGAGAAACACAGCACGACGGACGTTACGGt > 1:194518/1‑71 (MQ=255) gTTCATACCGGTAAACTGCTGCATCGCCTGCAACAACATACCGAGAAACACAGCACGACGGACGTTACGGt > 1:1930232/1‑71 (MQ=255) ttCATACCGGTAAACTGCTGCATCGCCTGCAACAACATACCGAGAAACACAGCACGACGGACGTTACGGt < 1:3399312/70‑1 (MQ=255) cATACCGGTAAACTGCTGCATCGCCTGCAACAACATACCgagca > 1:238203/1‑42 (MQ=255) cATACCGGTAAACTGCTGCATCGCCTGCAACAACATACCGAGAAACACAGCACGACGGACGTTACGGTTGa > 1:22846/1‑71 (MQ=255) cATACCGGTAAACTGCTGCATCGCCTGCAACAACATACCGAGAAACACAGCACGACGGACGTTACGGTTGa > 1:2076203/1‑71 (MQ=255) aTACCGGTAAACTGCTGCATCGCCTGCAACAACATACCGAGAAACACAGCACGACGGACGTTACGGTTGa < 1:3399358/70‑1 (MQ=255) aTACCGGTAAACTGCTGCATCGCCTGCAACAACATACCGAGAAACACAGCACGACGGACGTTACGGTTGAt < 1:3283205/71‑1 (MQ=255) aTACCGGTAAACTGCTGCATCGCCTGCAACAACATACCGAGAAACACAGCACGACGGACGTTACGGTTGAt < 1:2890600/71‑1 (MQ=255) aTACCGGTAAACTGCTGCATCGCCTGCAACAACATACCGAGAAACACAGCACGACGGACGTTACGGTTGAt < 1:2883196/71‑1 (MQ=255) aCCGGTAAACTGCTGCATCGCCTGCAACAACATACCGAGAAACACAGCACgacggacg < 1:625894/58‑1 (MQ=255) ccGGTTAACTGCTGCATCGCCTGCAACAACATACCGAGAAACACAGCACGACGGACGTTACGGTTGATCt < 1:1159577/70‑1 (MQ=255) ccGGTAAACTGCTGCATCGCCTGCAACAACATACCGAGAAACACAGCACGACGGACGTTACGGTTGATCt < 1:2820770/70‑1 (MQ=255) | GTTGTTCTGTGGTCGTAAAGCCCGCCATTTTGAAGATACGCGGCGCGTAGTACATGATGATGTTCATACCGGTAAACTGCTGCATCGCCTGCAACAACATACCGAGAAACACAGCACGACGGACGTTACGGTTGATCT > minE/1928334‑1928471 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |