| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 2957932 | 52 (0.880) | 4 (0.080) | 4/90 | NT | 7.0% | coding (247/606 nt) | osmY | periplasmic protein |
| ? | minE | = 2957954 | 60 (1.150) | coding (269/606 nt) | osmY | periplasmic protein | |||||
ACCGCGAAAGTGAAGGCGGCCCTGGTGGATCATGACAACATCAAGAGCACCGATATCTCTGTAAAAACCGATCAAAAAGTCGTGACCCTGAGCGGTTTCGTTGAAAGCCAGGCCCAGGCCGAAGAGGCAGTGAAAGTGGC > minE/2957863‑2958002 | aCCGCGAAAGTGAAGGCGGCCCTGGTGGATCATGACAACATCAAGAGCACCGATATCTCTGTAAAAACCGa > 1:2711596/1‑71 (MQ=255)aCCGCGAAAGTGAAGGCGGCCCTGGTGGATCATGACAACATCAAGAGCACCGATATCTCTGTAAAAACCG < 1:2346063‑M1/70‑1 (MQ=255) cgcgAAAGTGAAGGCGGCCCTGGTGGATCATGACAACATCAAGAGCTCCGATATCTCTGTAAAAACCGa > 1:268253/1‑69 (MQ=255) cgcgAAAGTGAAGGCGGCCCTGGTGGATCATGACAACATCAAGAGCACCGATATCTCTGTAAAAACCGa > 1:2263515/1‑69 (MQ=255) gcgAAAGTGAAGGCGGCCCTGGTGGATCATGACAACATCAAGAGCACCGATATCTCTGTAAAAACCGATCa < 1:971214/71‑1 (MQ=255) cgAAAGTGAAGGCGGCCCTGGTGGATCATGACAACATCAAGAGCACCGATATCTCTGTAAAAACCGATCa > 1:1363343/1‑70 (MQ=255) gAAAGTGAAGGCGGCCCTGGTGGATCATGACAACATCAAGAGCACCGATATCTCTGTAAAAACCGATCaaa < 1:2152723/71‑1 (MQ=255) aaGGCGGCCCTGGTGGATCATGACAACATCAAGAGCACCGATATCTCTGTAAAAACCGATCAAAAAGTCGt < 1:889239/71‑1 (MQ=255) ggcggcCCTGGTGGATCATGACAACATCAAGAGCACCGATATCTCTGTAAAAACCGATCaaaaa > 1:1377634/1‑64 (MQ=255) ggcggcCCTGGTGGATCATGACAACATCAAGAGCACCGATATCTCTGTAAAAACCGATCaaaaa > 1:539880/1‑64 (MQ=255) cccTGGTGGATCATGACAACATCAAGAGCACCGATATCTCTGTAAAAACCGATCAAAAAGTCGTGACCCt > 1:2638885/1‑70 (MQ=255) ccTGGTGGATCATGACAACATCAAGAGCACCGATATCTCTGTAAAAACCGATCAAAAAGTCGTGACCCTGa < 1:3133597/71‑1 (MQ=255) ccTGGTGGATCATGACAACATCAAGAGCACCGATATCTCTGTAAAAACCGATCAAAAAGTCGTGACCCTGa < 1:1765275/71‑1 (MQ=255) ccTGGTGGATCATGACAACATCAAGAGCACCGATATCTCTGTAAAAACCG < 1:1781233‑M1/50‑1 (MQ=255) ccTGGTGGATCATGACAACATCAAGAGCACCGATATCTCTGTAAAAACCG < 1:1997834‑M1/50‑1 (MQ=255) cTGGTGGATCATGACAACATCAAGCGCACCGATATCTCTGTAAAAACCGATCaaa > 1:2575726/1‑55 (MQ=255) cTGGTGGATCATGACAACATCAAGAGCACCGATATCTCTGTAAAAACCGATCaaa > 1:1760062/1‑55 (MQ=255) tggtggATCATGACAACATCAAGAGCACCGATATCTCTGTAAAAACCGATCAAAAAGTCGTGACCCTGAGc < 1:1751133‑M2/71‑2 (MQ=255) tggaggATCATGACAACATCAAGAGCACCGATATCTCTGTAAAAACCGctcagggtcacgactttttgatc > 1:2017346‑M1/1‑48 (MQ=255) ggtggATCATGACAACATCAAGAGCACCGATATCTCTGTAAAAACCGATCAAAAAGTCGTGACCCTGAGcg < 1:3168197‑M2/71‑3 (MQ=255) gtggATCATGACAACATCAAGAGCACCGATATCTCTGTAAAAACCGctcagggtcacgactttttgatcg < 1:3734841‑M1/70‑25 (MQ=255) gtggATCATGACAACATCAAGAGCACCGATATCTCTGTAAAAACCGATCAAAAAGTCGt < 1:103885/59‑1 (MQ=255) gtggATCATGACAACATCAAGAGCACCGATATCTCTGTAAAAACCGATCAAAAAGTCGt < 1:2314249/59‑1 (MQ=255) gtggATCATGACAACATCAAGAGCACCGATATCTCTGTAAAAACCGATCAAAAAGTCGt < 1:3161377/59‑1 (MQ=255) gtggATCATGACAACATCAAGAGCACCGATATCTCTGTAAAAACCGATCAAAAAGTCGTGACCCTGAGcgg < 1:944252‑M2/71‑4 (MQ=255) tggATCATGACAACATCAAGAGCACCGATATCTCTGTAAAAACCGctcagggtcacgactttttgatcggt > 1:914191‑M1/1‑45 (MQ=255) tggATCATGACAACATCAAGAGCACCGATATCTCTGTAAAAACCGctcagggtcacgactttttgatcggt < 1:3311861‑M1/71‑27 (MQ=255) tggATCATGACAACATCAAGAGCACCGATATCTCTGTAAAAACCGATCAAAAAGTCGt < 1:807989/58‑1 (MQ=255) tCATGACAACATCAAGAGCACCGATATCTCTGTAAAAACCGATCAAAAAGTCGTGACCCTGAGCGGTTTCg < 1:860649/71‑1 (MQ=255) tCATGACAACATCAAGAGCACCGATATCTCTGTAAAAACCGATCAAAAAGTCGTGACCCTGAGCGGTTTCg < 1:3403281/71‑1 (MQ=255) tCATGACAACATCAAGAGCACCGATATCTCTGTAAAAACCGATCAAAAAGTCGTGACCCTGAGCGGTTTCg < 1:2514845/71‑1 (MQ=255) aTGACAACATCAAGAGCACCGATATCTCTGTAAAAACCGa < 1:601627/40‑1 (MQ=255) aTGACAACATCAAGAGCACCGATATCTCTGTAAAAACCGa < 1:3328619/40‑1 (MQ=255) aTGACAACATCAAGAGCACCGATATCTCTGTAAAAACCGa < 1:1171936/40‑1 (MQ=255) aTGACAACATCAAGAGCACCGATATCTCTGTAAAAACCGATCaaa < 1:1157231/45‑1 (MQ=255) aTGACAACATCAAGAGCACCGATATCTCTGTAAAAACCGATCaaa < 1:2179461/45‑1 (MQ=255) aTGACAACATCAAGAGCACCGATATCTCTGTAAAAACCGATCaaa < 1:2682747/45‑1 (MQ=255) aTGACAACATCAAGAGCACCGATATCTCTGTAAAAACCGATCaaa < 1:434710/45‑1 (MQ=255) aTGACAACATCAAGAGCACCGATATCTCTGTAAAAACCGATCaaa < 1:3171150/45‑1 (MQ=255) aTGACAACATCAAGAGCACCGATATCTCTGTAAAAACCGATCAAAAAGTCGTGACCCTGa > 1:1307297/1‑60 (MQ=255) aTGACAACATCAAGAGCACCGATATCTCTGTAAAAACCGATCAAAAAGTCGTGACCCTGa > 1:2878714/1‑60 (MQ=255) tGACAACATCAAGAGCACCGATATCTCTGTAAAAACCGa < 1:2530382/39‑1 (MQ=255) tGACAACATCAAGAGCACCGATATCTCTGTAAAAACCGATCAAAAAGTCGTGACCCTGAGCGGTTTCGtt > 1:262499/1‑70 (MQ=255) gACAACATCAAGAGCACCGATATCTCTGTAAAAACCGATCaaaaa > 1:116975/1‑45 (MQ=255) caacaTCAAGAGCACCGATATCTCTGTAAAAACCGATCAAAAAGTCGTGACCCTGAGCGGTTTCGTTGaa < 1:3716443/70‑1 (MQ=255) aacaTCAAGAGCACCGATATCTCTGTAAAAACCGATCAAAAAGTCGTGACCCTGAGcggt < 1:3177086‑M2/60‑5 (MQ=255) acaTCAAGAGCACCGATATCTCTGTAAAAACCGATCAAAAAGTCGTGACCCTGAGCGGTTTCGTTGAAAGc > 1:3580447/1‑71 (MQ=255) caTCAAGAGCACCGATATCTCTGTAAAAACCGATCAAAAAGTCGTGACCCTGAGCGGTTTCGTTGAAAGcc < 1:126567/71‑1 (MQ=255) caTCAAGAGCACCGATATCTCTGTAAAAACCGATCAAAAAGTCGTGACCCTGAGCGGTTTCGTTGAAAGcc < 1:2668741/71‑1 (MQ=255) aTCAAGAGCACCGATATCTCTGTAAAAACCGATCaaa < 1:2871225/37‑1 (MQ=255) tCAAGAGCACCGATATCTCTGTAAAAACCGATCAAAAAGTCGTGACCCTGAGCGGTTTCGTTGAAAGccag > 1:2813048/1‑71 (MQ=255) agCACCGATATCTCTGTAAAAACCGATCAAAAAGTCGTGACCCTGAGCGGTTTCGTTGAAAGccaggccca < 1:2900164/71‑1 (MQ=255) aCCGATATCTCTGTAAAAACCGATCAAAAAGTCGTGACCCTGAGCGGTTTCGTTGAAAGccaggcccaggc > 1:1174571/1‑71 (MQ=255) ccGATATCTCTGTAAAAACCGATCAAAAAGTCGTGACCCTGAGCGGTTTCGTTGAAAGCcaggcccaggcc > 1:3260611/1‑71 (MQ=255) cGATATCTCTGTAAAAACCGATCAAAAAGTCGTGACCCTg > 1:844397/1‑40 (MQ=255) cGATATCTCTGTAAAAACCGATCAAAAAGTCGTGACCCTGAGcggttt < 1:1132922‑M2/48‑7 (MQ=255) cGATATCTCTGTAAAAACCGATCAAAAAGTCGTGACCCTGAGcgg > 1:3087015‑M2/1‑42 (MQ=255) cGATATCTCTGTAAAAACCGATCAAAAAGTCGTGACCCTGAGcgg > 1:824987‑M2/1‑42 (MQ=255) cGATATCTCTGTAAAAACCGATCAAAAAGTCGTGACCCTGAGcgg > 1:718185‑M2/1‑42 (MQ=255) atCTCTGTAAAAACCGATCAAAAAGTCGTGACCCTGAGCGGTTTCGTTGAAAGccaggccc < 1:772284/61‑1 (MQ=255) atCTCTGTAAAAACCGATCAAAAAGTCGTGACCCTGAGCGGTTTCGTTGAAAGccaggccc < 1:1912699/61‑1 (MQ=255) tctGTAAAAACCGATCAAAAAGTCGTGACCCTGAGCGGTTTCGTTGAAAGCCAGGCCCAGGCCGAAGAgg > 1:664042/1‑70 (MQ=255) ctGTAAAAACCGATCAAAAAGTCGTGACCCTGAGCGGTTTCGTTGAAAGCCAGGCCCAGGCCGAAGAgg > 1:2544614/1‑69 (MQ=255) tGTAAAAACCGATCAAAAAGTCGTGACCCTGAGCGGTTTCGTTGAAAGccaggcccag < 1:1615916/58‑1 (MQ=255) tGTAAAAACCGATCAAAAAGTCGTGACCCTGAGCGGTTTCGTTGAAAGccaggcccag < 1:2578133/58‑1 (MQ=255) tGTAAAAACCGATCAAAAAGTCGTGACCCTGAGCGGTTTCGTTGAAAGccaggcccag < 1:3587252/58‑1 (MQ=255) tGTAAAAACCGATCAAAAAGTCGTGACCCTGAGCGGTTTCGTTGAAAGccaggcccag < 1:2530322/58‑1 (MQ=255) tGTAAAAACCGATCAAAAAGTCGTGACCCTGAGCGGTTTCGTTGAAAGCCAGGCCCAGGCCGAagag < 1:2316270/67‑1 (MQ=255) tGTAAAAACCGATCAAAAAGTCGTGACCCTGAGCGGTTTCGTTGAAAGCCAGGCCCAGGCCGAaga < 1:3542809/66‑1 (MQ=255) tGTAAAAACCGATCAAAAAGTCGTGACCCTGAGCGGTTTCGTTGAAAGCCAGGCCCAGGCCGAAGAgg < 1:2466606/68‑1 (MQ=255) gTAAAAACCGATCAAAAAGTCGTGACCCTGAGCGGTTTCGTTGAAAGCCAGGCCCAGGCCg > 1:3530101/1‑61 (MQ=255) aaaaCCGATCAAAAAGTCGTGACCCTGAGCGGTTTCGtt < 1:1784817/39‑1 (MQ=255) aaaaCCGATCAAAAAGTCGTGACCCTGAGCGGTTTCGTTg > 1:573336/1‑40 (MQ=255) aaaaCCGATCAAAAAGTCGTGACCCTGAGCGGTTTCGTTGa > 1:909463/1‑41 (MQ=255) aaaaCCGATCAAAAAGTCGTGACCCTGAGCGGTTTCGTTGAAAGccaggcccag < 1:2711672/54‑1 (MQ=255) aaaaCCGATCAAAAAGTCGTGACCCTGAGCGGTTTCGTTGAAAGccaggcccag < 1:1015589/54‑1 (MQ=255) aaaCCGctcagggtcacgactttttgatcggtttttacagagatatcg < 1:1132922‑M1/48‑43 (MQ=255) aCCGctcagggtcacgactttttgatcggtttttacagagatatcggtgctcttgatgtt < 1:3177086‑M1/60‑57 (MQ=255) aCCGATCAAAAAGTCGTGACCCTGAGcggtttttacagagatatcggtgctcttgatgttgtcatgatcca < 1:3311861‑M2/71‑46 (MQ=255) aCCGATCAAAAAGTCGTGACCCTGAGcggtttttacagagatatcggtgctcttgatgttgtcatgatcca > 1:914191‑M2/1‑26 (MQ=255) ccGctcagggtcacgactttttgatcggtttttacagagatatcggtgctcttgatgttgtcatgatccac < 1:944252‑M1/71‑69 (MQ=255) ccGctcagggtcacgactttttgatcggtttttacagagatatcg > 1:718185‑M1/1‑3 (MQ=255) ccGctcagggtcacgactttttgatcggtttttacagagatatcg > 1:824987‑M1/1‑3 (MQ=255) ccGctcagggtcacgactttttgatcggtttttacagagatatcg > 1:3087015‑M1/1‑3 (MQ=255) ccGATCAAAAAGTCGTGACCCTGAGCGGTTTCGTTGAAAGccaggccca < 1:2325024/49‑1 (MQ=255) cGctcagggtcacgactttttgatcggtttttacagagatatcggtgctcttgatgttgtcatgatccacc < 1:3168197‑M1/71‑70 (MQ=255) cGATCAAAAAGTCGTGACCCTGAGcggtttttacagagatatcggtgctcttgatgttgtcatgatccac < 1:3734841‑M2/70‑47 (MQ=255) cGATCAAAAAGTCGTGACCCTGAGCGGTTTCGTTGAAAGCCAGGCCCAGGCCGAAGAGGCAGTg < 1:3241179/64‑1 (MQ=255) cGATCAAAAAGTCGTGACCCTGAGCGGTTTCGTTGAAAGCCAGGCCCAGGCCGAAGAGGCAGTg < 1:307090/64‑1 (MQ=255) cGATCAAAAAGTCGTGACCCTGAGCGGTTTCGTTGAAAGCCAGGCCCAGGCCGAAGAGGCAGTg < 1:274545/64‑1 (MQ=255) cGATCAAAAAGTCGTGACCCTGAGCGGTTTCGTTGAAAGCCAGGCCCAGGCCGAAGAGGCAGTg < 1:2181303/64‑1 (MQ=255) gctcagggtcacgactttttgatcggtttttacagagatatcggtgctcttgatgttgtcatgatccacca < 1:1751133‑M1/71‑71 (MQ=255) gATCAAAAAGTCGTGACCCTGAGcggtttttacagagatatcggtgctcttgatgttgtcatgatcctcca > 1:2017346‑M2/1‑23 (MQ=255) | ACCGCGAAAGTGAAGGCGGCCCTGGTGGATCATGACAACATCAAGAGCACCGATATCTCTGTAAAAACCGATCAAAAAGTCGTGACCCTGAGCGGTTTCGTTGAAAGCCAGGCCCAGGCCGAAGAGGCAGTGAAAGTGGC > minE/2957863‑2958002 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |