| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | 3845 = | 34 (0.580) | 6 (0.120) | 4/90 | NT | 13.8% | coding (112/1287 nt) | thrC | threonine synthase |
| ? | minE | 3877 = | 45 (0.860) | coding (144/1287 nt) | thrC | threonine synthase | |||||
AATCAGGGGCTGTTTTTTCCGCACGACCTGCCGGAATTCAGCCTGACTGAAATTGATGAGATGCTGAAGCTGGATTTTGTCACCCGCAGTGCGAAGATCCTCTCGGCGTTTATTGGTGATGAAATCCCACAGGA > minE/3809‑3942 | gagaggatcttcgcactgcgggtgacaaaatccagcTTCAGCCTGACTGAAATTGATGAGATGCTGAAGCt > 1:773938‑M1/37‑71 (MQ=255) aTCAGGGGCTGTTTTTTCAGCACGACCTGCCGGAATTCAGCCTGACTGAAATTGATGAGATGCTGAAGCTg < 1:531134/71‑1 (MQ=255) tCAGGGGCTGTTTTTTCCGCACGACCTGCCGGAATTCAGCCTGACTGAAATTGATGAGATGCTGAAGCTgg < 1:2563433/71‑1 (MQ=255) tCAGGGGCTGTTTTTTCCGCACGACCTGCCGGAATTCAGCCTGACTGAAATTGATGAGATGCTGAAGCTgg < 1:1456806/71‑1 (MQ=255) cAGGGGCTGTTTTTTCCGCACGACCTGCCGGAATTCAGCCTGACTGAAATTGATGAGATGCTGAAGCTgg < 1:3231219/70‑1 (MQ=255) cAGGGGCTGTTTTTTCCGCACGACCTGCCGGAATTCAGCCTGACTGAAATTGATGAGATGCTGAAGCTGGa > 1:985022/1‑71 (MQ=255) ggggCTGTTTTTTCCGCACGACCTGCCGGAATTCAGCCTGACTGAAATTGATGAGATGCTGAAGCTGGAtt < 1:908564/71‑1 (MQ=255) ttttttCCGCACGACCTGCCGGAATTCAGCCTGACTGAAATTGATGAGATGCTGAAGCTGGATTTTGTc < 1:1357604/69‑1 (MQ=255) ttttttCCGCACGACCTGCCGGAATTCAGCCTGACTGAAATTGATGAGATGCTGAAGCTGGATTTTGTc < 1:3513075/69‑1 (MQ=255) ttttttCCGCACGACCTGCCGGAATTCAGCCTGACTGAAATTGATGAGATGCTGAAGCTGGATTTTGTCAc < 1:2918550/71‑1 (MQ=255) ccGCACGACCTGCCGGAATTCAGCCTGACTGAAATTGATGAGATGCTGAAGCTGGAtttt > 1:3660255/1‑60 (MQ=255) ccGCACGACCTGCCGGAATTCAGCCTGACTGAAATTGATGAGATGCTGAAGCTGGAtttt > 1:833236/1‑60 (MQ=255) aCGACCTGCCGGAATTCAGCCTGACTGAAATTGATGAGATGCTGAAGCTGGATTTTGTCACCCGCAGTGc > 1:2580075/1‑70 (MQ=255) aCGACCTGCCGGAATTCAGCCTGACTGAAATTGATGAGATGCTGAAGCTGGATTTTGTCACCCGCAGTGc > 1:2329652/1‑70 (MQ=255) aCGACCTGCCGGAATTCAGCCTGACTGAAATTGATGAGATGCTGAAGCTGGATTTTGTCACCCGCAGTGCg < 1:1144636/71‑1 (MQ=255) aCCTGCCGGAATTCAGCCTGACTGAAATTGATGAGATGCTGAAGCTGGATTTTGTCACCCGCAGTGCGAAg < 1:909462/71‑1 (MQ=255) aCCTGCCGGAATTCAGCCTGACTGAAATTGATGAGATGCTGAAGCTGGATTTTGTCACCCGCAGTGCGAAg < 1:2309587/71‑1 (MQ=255) gCCGGAATTCAGCCTGACTGAAATTGATGAGATGCTGAAGCTGGATTTTGTCACCCGCAGTGCGGAGATcc > 1:1752509/1‑71 (MQ=255) cGGAATTCAGCCTGACTGAAATTGATGAGATGCTGAAGCTGGATTTTGTCACCCGCAGTGCGAAGATCctc < 1:11308/71‑1 (MQ=255) ggAATTCAGCCTGACTGAAATTGATGAGATGCTGAAGCTGGAttt > 1:571584/1‑45 (MQ=255) ggAATTCAGCCTGACTGAAATTGATGAGATGCTGAAGCTGGATTTTGTCACCCGCAGTGCGAAGATCctct < 1:27753/71‑1 (MQ=255) gAATTCAGCCTGACTGAAATTGATGAGATGCTGAAGCTGGATTTTGTCACCCGCAGTGCg < 1:1997938/60‑1 (MQ=255) gAATTCAGCCTGACTGAAATTGATGAGATGCTGAAGCTGGATTTTGTCACCCGCAGTGCg < 1:3233176/60‑1 (MQ=255) agcttcagcatctcatcaatttcagtcaggctgaaGCTGGATTTTGTCACCCGCAGTGCGAAGATCCtctc > 1:773938‑M2/36‑71 (MQ=255) aaTTCAGCCTGACTGAAATTGATGAGATGCTGAAGCTGGATTTTGTCACCCGCAGTGCGAAGATCCtctc > 1:1643644/1‑70 (MQ=255) aTTCAGCCTGACTGAAATTGATGAGATGCTGAAGCTGGATTTTGTCACCCGCAGTGCGAAGATCctc > 1:1698515/1‑67 (MQ=255) aaCAGCCTGACTGAAATTGATGAGATGCTGAAGCTGGATTTTGTCACCCGCAGTGCGAAGATCCTCTCGGc > 1:3257425‑M1/3‑71 (MQ=255) aaCAGCCTGACTGAAATTGATGAGATGCTGAAGCTGGATTTTGTCACCCGCAGTGCGAAGATCCTCTCGGc > 1:2040890‑M1/3‑71 (MQ=255) aCAGCCTGACTGAAATTGATGAGATGCTGAAGCTGGATTTTGTCACCCGCAGTGCGAAGATCCTCTCGGc > 1:293286‑M1/2‑70 (MQ=255) AGCCTGACTGAAATTGATGAGATGCTGAAGCTGGATTTTGTCACCCGCAGTGCGAAGATCCTCTCGGCGtt < 1:2287403‑M1/71‑1 (MQ=255) AGCCTGACTGAAATTGATGAGATGCTGAAGCTGGATTTTGTCACCCGCAGTGCGAAGATCCTCTCGGCGtt < 1:907489‑M1/71‑1 (MQ=255) AGCCTGACTGAAATTGATGAGATGCTGAAGCTGGATTTTGTCACCCGCAGTGCGAAGATCCTCTCGGCGtt < 1:2474876‑M1/71‑1 (MQ=255) AGCCTGACTGAAATTGATGAGATGCTGAAGCTGGATTTTGTCACCCGCAGTGCGAAGATCCTATCGGCGtt < 1:1504593‑M1/71‑1 (MQ=255) gcatctcatcaatttcagtcaggctgaaGCTGGATTTTGTCACCCGCAGTGCGAAGATCCTCTCGGCGtt > 1:2260610‑M2/29‑70 (MQ=255) GCCTGACTGAAATTGATGAGATGCTGAAGCTGGATTTTGTCACCCGCAGTGCGAAGATCCTCTCGGCGtt < 1:2739207‑M1/70‑1 (MQ=255) ctgactgaAATTGATGAGATGCTGAAGCTGGATTTTGTCACCCGCAGTGCGAAGATCCTCTCGGCGt > 1:2663343/1‑67 (MQ=255) ctgactgaAATTGATGAGATGCTGAAGCTGGATTTTGTCACCCGCAGTGCGAAGATCCTCTCGGCGt > 1:1112918/1‑67 (MQ=255) ctgactgaAATTGATGAGATGCTGAAGCTGGATTTTGTCACCCGCAGTGCGAAGATCCTCTCGGCGt > 1:1924058/1‑67 (MQ=255) tgactgaAATTGATGAGATGCTGAAGCTGGAtttt < 1:1666486/35‑1 (MQ=255) tgactgaAATTGATGAGATGCTGAAGCTGGATTTTGTCACCCGCa < 1:2915426/45‑1 (MQ=255) tgactgaAATTGATGAGATGCTGAAGCTGGATTTTGTCACCCGCAGTGCGAAGATCCTCTCGGCGTTTAtt > 1:237028/1‑71 (MQ=255) tctcatcaatttcagtcaggctgaaGCTGGATTTTGTCACCCGCAGTGCGAAGATCCTCTCGGCGTTTAtt > 1:2066291‑M2/26‑71 (MQ=255) tctcatcaatttcagtcaggctgaaGCTGGATTTTGTCACCCGCAGTGCGAAGATCCTCTCGGCGTTTAtt > 1:2308663‑M2/26‑71 (MQ=255) gactgaAATTGATGAGATGCTGAAGCTGGATTTTGTCACCCGCAGTGCGAAGATCCTCTCGGCGtt > 1:850220/1‑66 (MQ=255) gactgaAATTGATGAGATGCTGAAGCTGGATTTTGTCACCCGCAGTGCGAAGATCCTCTCGGCGtt < 1:1524562/66‑1 (MQ=255) actgaAATTGATGAGATGCTGAAGCTGGATTTTGTCACCCGCAGTGCGAAGATCCTCTCGGCGTTTATTgg > 1:2736492/1‑71 (MQ=255) ctgaAATTGATGAGATGCTGAAGCTGGATTTTGTCACCCGCAGTGCGAAGATCCTCTCGGCGTTTATTGGt < 1:2171846/71‑1 (MQ=255) ctgaAATTGATGAGATGCTGAAGCTGGATTTTGTCACCCGCAGTGCGAAGATCCTCTCGGCGTTTATTGGt < 1:469448/71‑1 (MQ=255) tgaAATTGATGAGATGCTGAAGCTGGATTTTGTCACCCGCAGTGCGaa > 1:849464/1‑48 (MQ=255) tgaAATTGATGAGATGCTGAAGCTGGATTTTGTCACCCGCAGTGCGaa > 1:1274682/1‑48 (MQ=255) tgaAATTGATGAGATGCTGAAGCTGGATTTTGTCACCCGCAGTGCGa < 1:2854202/47‑1 (MQ=255) tgaAATTGATGAGATGCTGAAGCTGGATTTTGTCACCCGCAGTGCGa < 1:3052029/47‑1 (MQ=255) tgaAATTGATGAGATGCTGAAGCTGGATTTTGTCACCCGCAGTGCGa < 1:970815/47‑1 (MQ=255) atcaatttcagtcaggctgaaGCTGGATTTTGTCACCCGCAGTGCGAAGATCCTCTCGGCGTTTATTg < 1:162031‑M2/47‑1 (MQ=255) atcaatttcagtcaggctgaaGCTGGATTTTGTCACCCGCAGTGCGAAGATCCTCTCGGCGTTTATTg < 1:56060‑M2/47‑1 (MQ=255) aaaTTGATGAGATGCTGAAGCTGGATTTTGTCACCCGCAGTGCGaa > 1:2150710/1‑46 (MQ=255) aaaTTGATGAGATGCTGAAGCTGGATTTTGTCACCCGCAGTGCGaa > 1:3332639/1‑46 (MQ=255) aaaTTGATGAGATGCTGAAGCTGGATTTTGTCACCCGCAGTGCGaa > 1:3598048/1‑46 (MQ=255) aaaTTGATGAGATGCTGAAGCTGGATTTTGTCACCCGCAGTGCGAAg > 1:329358/1‑47 (MQ=255) aaTTGATGAGATGCTGAAGCTGGATTTTGTCACCCGCAGTGCGAAGATCCTCTCGGCGTTTATTGGtgat > 1:874739/1‑70 (MQ=255) aTTGATGAGATGCTGAAGCTGGATTTTGTCACCCGCAGTGCGAAGATCCTCTCGGCGTTTATTGGtgatga < 1:188803/71‑1 (MQ=255) aTTGATGAGATGCTGAAGCTGGATTTTGTCACCCGCAGTGCGAAGATCCTCTCGGCGTTTATTGGtgatga < 1:139087/71‑1 (MQ=255) gatgaGATGCTGAAGCTGGATTTTGTCACCCGCAGTGCGAAGATc > 1:3094547/1‑45 (MQ=255) tgaGATGCTGAAGCTGGATTTTGTCACCCGCAGTGCGAAGATCCTCTCGGCg < 1:471988/52‑1 (MQ=255) gaTGCTGAAGCTGGATTTTGTCACCCGCAGTGCGAAg < 1:1501218/37‑1 (MQ=255) gaTGCTGAAGCTGGATTTTGTCACCCGCAGTGCGAAg < 1:1867530/37‑1 (MQ=255) gaTGCTGAAGCTGGATTTTGTCACCCGCAGTGCGAAg < 1:1994868/37‑1 (MQ=255) aTGCTGAAGCTGGATTTTGTCACCCGCAGTGCGAAGATCCTCTCGGCGTTTAt < 1:2423146/53‑1 (MQ=255) tGCTGAAGCTGGATTTTGTCACCCGCAGTGCGAAGATCCTCTCGGCGtt < 1:624472/49‑1 (MQ=255) tGCTGAAGCTGGATTTTGTCACCCGCAGTGCGAAGATCCTCTCGGCGtt < 1:286112/49‑1 (MQ=255) gctgaaGCTGGATTTTGTCACCCGCAGTGCGAAGATCCTCTCGGCGt < 1:2697858‑M2/41‑1 (MQ=255) gctgaaGCTGGATTTTGTCACCCGCAGTGCGAAGATCCTCTCGGCGt < 1:198702‑M2/41‑1 (MQ=255) gctgaaGCTGGATTTTGTCACCCGCAGTGCGAAGATCCTCTCGGCGt < 1:281772‑M2/41‑1 (MQ=255) gctgaaGCTGGATTTTGTCACCCGCAGTGCGAAGATCCTCTCGGCGTTTATTgg > 1:2217272‑M2/7‑54 (MQ=255) gctgaaGCTGGATTTTGTCACCCGCAGTGCGAAGATCCTCTCGGCGTTTATTgg > 1:1065109‑M2/7‑54 (MQ=255) gctgaaGCTGGATTTTGTCACCCGCAGTGCGAAGATCCTCTCGGCGTTTATTg > 1:565841‑M2/7‑53 (MQ=255) ctgaaGCTGGATTTTGTCACCCGCAGTGCGAAGATCCTCTCGGCGTTTATTGGTGATGAAATCCCACAGGa < 1:2737386‑M2/66‑1 (MQ=255) | AATCAGGGGCTGTTTTTTCCGCACGACCTGCCGGAATTCAGCCTGACTGAAATTGATGAGATGCTGAAGCTGGATTTTGTCACCCGCAGTGCGAAGATCCTCTCGGCGTTTATTGGTGATGAAATCCCACAGGA > minE/3809‑3942 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |