| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | 409429 = | 54 (0.920) | 6 (0.110) | 3/92 | NT | 11.8% | coding (330/582 nt) | rlpB | minor lipoprotein |
| ? | minE | 409460 = | 41 (0.770) | coding (299/582 nt) | rlpB | minor lipoprotein | |||||
CTTTGGCGCTAATCGGGTAGATATCACGGCCGGGGATCAACACGGTCGCATTAACCGTCATGATCATCTGATACTCTGCTGTTTGACCGTTACGGAATACCGATGCGGTATCTTTCGCGATGCTCACTTTACCCA > minE/409395‑409529 | cTTTGGCGCTAATCGGGTAGATATCACGGCCGGGGATCAACACGGTCGCATTAACCGTCATGATCATCTg < 1:2686537/70‑1 (MQ=255)cTTTGGCGCTAATCGGGTAGATATCACGGCCGGGGATCAACACGGTCGCATTAACCGTCATGATCATCTg < 1:2550923/70‑1 (MQ=255) tttGGCGCTAATCGGGTAGATATCACGGCCGGGGATCAACACGGTCGCATTAACCGTCATGATCATCTGa > 1:2528903/1‑70 (MQ=255) tttGGCGCTAATCGGGTAGATATCACGGCCGGGGATCAACACGGTCGCATTAACCGTCATGATCATCTGa > 1:1758679/1‑70 (MQ=255) aaTCGGGTAGATATCACGGCCGGGGATCAACACGGTCGCATTAACCGTCATGATCATCTGATACTctgctg > 1:2163707/1‑71 (MQ=255) aTCGGGTAGATATCACGGCCGGGGATCAACACGGTCGCATTAACCGTCATGATCATCTGATACTCTGCTGt > 1:2489364/1‑71 (MQ=255) aTCGGGTAGATATCACGGCCGGGGATCAACACGGTCGCATTAACCGTCATGATCATCTGATACTCTGCTGt > 1:2149464/1‑71 (MQ=255) tCGGGTAGATATCACGGCCGGGGATCAACACGGTCGCATTAACCGTCATGATCATCTGATACTCTGCTGtt > 1:111015/1‑71 (MQ=255) cGGGTAGATATCACGGCCGGGGATCAACACGGTCGCATTAACCGTCATGATCATCTGATACTCTGCTGttt > 1:1781332/1‑71 (MQ=255) gggTAGATATCACGGCCGGGGATCAACACGGTCGCATTAACCGTCATGATCATCTGATACTCTGCTGttt > 1:3645609/1‑70 (MQ=255) gggTAGATATCACGGCCGGGGATCAACACGGTCGCATTAACCGTCATGATCATCTGATACTCTGCTGttt > 1:1795537/1‑70 (MQ=255) gggTAGATATCACGGCCGGGGATCAACACGGTCGCATTAACCGTCATGATCATCTGATACTCTGCTGttt > 1:3685755/1‑70 (MQ=255) atttCACGGCCGGGGATCAACACGGTCGGATTAACCGTCATGATCATCTGATACTCTGCTGTTTGACCGt < 1:174275/67‑1 (MQ=255) atCACGGCCGGGGATCAACACGGTCGCATTAACCGTCATGATCATCTGATACTCTGCTGTTTGAACGTTAc > 1:1186042/1‑71 (MQ=255) tCACGGCCGGGGATCAACACGGTCGCATTAACCGTCATGATCATCTGATAATCTGCTGTTTGACCGTTACg < 1:1789722/71‑1 (MQ=255) cACGGCCGGGGATCAACACGGTCGCATTAACCGTCATGATCATCTGATACTCTGCTGTTTGACCGTTACg > 1:17880/1‑70 (MQ=255) cACGGCCGGGGATCAACACGGTCGCATTAACCGTCATGATCATCTGATACTCTGCTGTTTGACCGTTACg > 1:71697/1‑70 (MQ=255) cACGGCCGGGGATCAACACGGTCGCATTAACCGTCATGATCATCTGATACTCTGCTGTTTGACCGTTACg > 1:1456370/1‑70 (MQ=255) aCGGCCGGGGATCAACACGGTCGCATTAACCGTCATGATCATCTGATACTCTGCTGTTTGACCGTTACgg < 1:3276541/70‑1 (MQ=255) ggCCGGGGATCAACACGGTCGCATTAACCGTCATGATCATCTGATACTCTGCTGTTTGACCGTTACGGaa > 1:3511420/1‑70 (MQ=255) gCCGGGGATCAACACGGTCGCATTAACCGTCATGATCATCTGATACTctgct > 1:1129018/1‑52 (MQ=255) gCCGGGGATCAACACGGTCGCATTAACCGTCATGATCATCTGATACTctgct > 1:2505405/1‑52 (MQ=255) cGGGGATCAACACGGTCGCATTAACCGTCATGATCATCTGATACTCTGCTGttt > 1:2352227/1‑54 (MQ=255) cGGGGATCAACACGGTCGCATTAACCGTCATGATCATCTGATACTCTGCTGTTTGACCGTTACGGAATAcc > 1:2856897/1‑71 (MQ=255) gggATCAACACGGTCGCATTAACCGTCATGATCATCTGATACTCTGCTGTTTGACCGTTACGGAATACCGa < 1:3204504/71‑1 (MQ=255) gggATCAACACGGTCGCATTAACCGTCATGATCATCTGATACTCTGCTGTTTGACCGTTACGGAATACCGa < 1:2783014/71‑1 (MQ=255) gatcatgacggttaatgcgaccgtgttgatcATCTGATACTCTGCTGt < 1:3008925‑M2/17‑1 (MQ=255) gatcatgacggttaatgcgaccgtgttgatcATCTGATACTCTGCTGt < 1:3670640‑M2/17‑1 (MQ=255) gatcatgacggttaatgcgaccgtgttgatcATCTGATACTCTGCTGt < 1:1998725‑M2/17‑1 (MQ=255) catgacggttaatgcgaccgtgttgatcATCTGATACTCTGCTGt > 1:244303‑M2/29‑45 (MQ=255) catgacggttaatgcgaccgtgttgatcATCTGATACTCTGCTGTTTGACCGTTACGGAATACCGATGCgg > 1:1934258‑M2/29‑71 (MQ=255) gacggttaatgcgaccgtgttgatcATCTGATACTCTGCTGTTTGACCGTTACGGAATACCGATg < 1:423959‑M2/40‑1 (MQ=255) cacGGTCGCATTAACCGTCATGATCATCTGATACTCTGCTGTTTGACCGTTACGGAAt > 1:1193416/1‑58 (MQ=255) cacGGTCGCATTAACCGTCATGATCATCTGATACTCTGCTGTTTGACCGTTACGGAATACCGATGCGGTAt > 1:3554909/1‑71 (MQ=255) acGGTCGCATTAACCGTCATGATCATCTGATACTCTGCTGTTTGACCGTTACGGAATACCGATGCGGTATc > 1:950320/1‑71 (MQ=255) cGGTCGCATTAACCGTCATGATCATCTGATACTCTGCTGTTTGACCGTTACgg < 1:3355346/53‑1 (MQ=255) cGGTCGCATTAACCGTCATGATCATCTGATACTCTGCTGTTTGACCGTTACgg < 1:2609626/53‑1 (MQ=255) ggTCGCATTAACCGTCATGATCATCTGATACTCTGCTGTTTGACCGTTACgg < 1:914053/52‑1 (MQ=255) gTCGCATTAACCGTCATGATCATCTGATACTCTGCTGTTTGACCGTTACGGaa > 1:209135/1‑53 (MQ=255) gTCGCATTAACCGTCATGATCATCTGATACTCTGCTGTTTGACCGTTACGGaa > 1:2623042/1‑53 (MQ=255) tCGCATTAACCGTCATGATCATCTGATACTCTGCTGTTTGAc < 1:2142139/42‑1 (MQ=255) gCATTAACCGTCATGATCATCTGATACTCTGCTGTTTGACCGTTACGGAATACCGATGCGGTATCTTTcg < 1:2252092/70‑1 (MQ=255) cATTAACCGTCATGATCATCTGATACTCTGCTGTTTGACCGTTACgg > 1:2191809/1‑47 (MQ=255) cATTAACCGTCATGATCATCTGATACTCTGCTGTTTGACCGTTACgg > 1:3071466/1‑47 (MQ=255) cATTAACCGTCATGATCATCTGATACTCTGCTGTTTGACCGTTACGGAATACCGATGCGGTGTCTTTcgcg < 1:2148608/71‑1 (MQ=255) ttAACCGTCATGATCATCTGATACTCTGCTGTTTGACCGTTACGGAATACCGATGCGGTATCTTTCGCGAt < 1:3665799/71‑1 (MQ=255) aaCCGTCATGATCATCTGATACTCTGCTGTTTGACCGTTACGGAATACCGATGCGGTATCTTTCGCGATg < 1:107063/70‑1 (MQ=255) aaCCGTCATGATCATCTGATACTCTGCTGTTTGACCGTTACGGAATACCGATGCGGTATCTTTCGCGATg < 1:2606615/70‑1 (MQ=255) aCCGTCATGATCATCTGATACTCTGCTGTTTGACCGTTACGGAATACCGATGCGGTATCTTTCGCGATGCt > 1:165033/1‑71 (MQ=255) cGTCATGATCATCTGATACTCTGCTGTTTGACCGTTACGGaa < 1:756192/42‑1 (MQ=255) cGTCATGATCATCTGATACTCTGCTGTTTGACCGTTACGGaa < 1:2876331/42‑1 (MQ=255) cGTCATGATCATCTGATACTCTGCTGTTTGACCGTTACGGaa < 1:309232/42‑1 (MQ=255) cGTCATGATCATCTGATACTCTGCTGTTTGACCGTTACGGaa < 1:391239/42‑1 (MQ=255) cGTCATGATCATCTGATACTCTGCTGTTTGACCGTTACGGaa < 1:3475282/42‑1 (MQ=255) cGTCATGATCATCTGATACTCTGCTGTTTGACCGTTACGGAATACCGATGCGGTATCTTTCGCGATGCTCa < 1:1745324/71‑1 (MQ=255) tCATGATCATCTGATACTCTGCTGTTTGACCGTTACGGAATACCGATGCGGTATCTTTCGCGATGCTCACt > 1:1528246/1‑71 (MQ=255) aTGATCATCTGATACTCTGCTGTTTGACCGTTACg > 1:3427344/1‑35 (MQ=255) aTGATCATCTGATACTCTGCTGTTTGACCGTTACGGAATACCGATGCGGTATCTTTCGCGATGCTCACttt < 1:1517110/71‑1 (MQ=255) tgatcATCTGATACTCTGCTGTTTGACCGTTACGGAATACCGATGCGGTATCTTTcgc < 1:933106‑M2/53‑1 (MQ=255) tgatcATCTGATACTCTGCTGTTTGACCGTTACGGAATACCGATGCGGTATCTTTcgc < 1:1448301‑M2/53‑1 (MQ=255) tgatcATCTGATACTCTGCTGTTTGACCGTTACGGAATACCGATGCGGTATCTTTcgc < 1:3448361‑M2/53‑1 (MQ=255) tgatcATCTGATACTCTGCTGTTTGACCGTTACGGAATACCGATGCGGTATCTTTcgc < 1:1383889‑M2/53‑1 (MQ=255) tgatcATCTGATACTCTGCTGTTTGACCGTTACGGAATACCGATGCGGTATCTTTcgc < 1:598392‑M2/53‑1 (MQ=255) tgatcATCTGATACTCTGCTGTTTGACCGTTACGGAATACCGATGCGGTATCTTTcgc < 1:2205302‑M2/53‑1 (MQ=255) tgatcATCTGATACTCTGCTGTTTGACCGTTACGGAATACCGATGCGGTATCTTTCGCGATGCTc < 1:3321824‑M2/60‑1 (MQ=255) tgatcATCTGATACTCTGCTGTTTGACCGTTACGGAATACCGATGCGGTATCTTTCGCGATGCTc < 1:3288025‑M2/60‑1 (MQ=255) tgatcATCTGATACTCTGCTGTTTGACCGTTACGGAATACCGATGCGGTATCTTTCGCGATGCTc < 1:2756759‑M2/60‑1 (MQ=255) gatcATCTGATACTCTGCTGTTTGACCGTTACGGaa < 1:2634848‑M2/32‑1 (MQ=255) atcATCTGATACTCTGCTGTTTGACCGTTACGGAATACCg > 1:1936686‑M2/4‑40 (MQ=255) atcATCTGATACTCTGCTGTTTGACCGTTACGGAATACCGATGCGGTATCTTTcgc < 1:3136063‑M2/53‑1 (MQ=255) atcATCTGATACTCTGCTGTTTGACCGTTACGGAATACCGATGCGGTATCTTTCGCGATGCTCAc > 1:3582414‑M2/4‑65 (MQ=255) atcATCTGATACTCTGCTGTTTGACCGTTACGGAATACCGATGCGGTATCTTTCGCGATGCTCACTTTAcc > 1:2851660‑M2/4‑71 (MQ=255) atcATCTGATACTCTGCTGTTTGACCGTTACGGAATACCGATGCGGTATCTTTCGCGATGCTCACTTTAcc > 1:1123523‑M2/4‑71 (MQ=255) atcATCTGATACTCTGCTGTTTGACCGTTACGGAATACCGATGCGGTATCTTTCGCGATGCTCACTTTAcc > 1:124775‑M2/4‑71 (MQ=255) atcATCTGATACTCTGCTGTTTGACCGTTACGGAATACCGATGCGGTATCTTTCGCGATGCTCACTTTAcc > 1:129082‑M2/4‑71 (MQ=255) tcATCTGATACTCTGCTGTTTGACCGTTACGGAATACCGATGCGGTATCTTTCGCGATGCTCACTTTAccc < 1:992835‑M2/69‑1 (MQ=255) cATCCGATACTCTGCTGTTTGACCGTTACGGAATACCGATGCGGTATCTTTCGCGATGCTCACTTTAccc > 1:1714784‑M2/2‑70 (MQ=255) atcTGATACTCTGCTGTTTGACCGTTACGGAATACCGATGCGGTATCTTTCGCGATGCTCACTTTACCCa < 1:2342784/70‑1 (MQ=255) | CTTTGGCGCTAATCGGGTAGATATCACGGCCGGGGATCAACACGGTCGCATTAACCGTCATGATCATCTGATACTCTGCTGTTTGACCGTTACGGAATACCGATGCGGTATCTTTCGCGATGCTCACTTTACCCA > minE/409395‑409529 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |