| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 1572933 | 41 (0.700) | 5 (0.090) | 4/92 | NT | 12.2% | coding (798/1416 nt) | gltX | glutamyl‑tRNA synthetase |
| ? | minE | = 1572957 | 35 (0.660) | coding (774/1416 nt) | gltX | glutamyl‑tRNA synthetase | |||||
TCTCTTCACGAGTGAAGATTTCCTGATCGCCGTGGGACCAGCCCAGACGCACCAGATAGTTCAGCAGTGCTTCTGGCAAATAACCGTCATCACGATACTGCATTACGCTGACTGCCCCGTGACGTTTGGACAGTTTTTTA > minE/1572887‑1573026 | tctcTTCACGAGTGAAGATTTCCTGATCGCCGTGGGACCAGCCCAGACGCACCAGATAGTTCAGCAGTGCt > 1:1616016/1‑71 (MQ=255) ctctTCACGAGTGAAGATTTCCTGATCGCCGTGGGACCAGCCCAGACGCACCAGATAGTTCAGCAGTGCTt < 1:1722055‑M2/71‑2 (MQ=255) tctTCACGAGTGAAGATTTCCTGATCGCCGTGGGACCAGCCCAGACGCACCAGATAGTTCAGCAGTGCTtc < 1:2112401‑M2/71‑3 (MQ=255) ttCACGAGTGAAGATTTCCTGATCGCCGTGGGACCAGCCCAGACGCACCAGATAGTTCAGCAGTGCTtctg < 1:2742409‑M2/71‑5 (MQ=255) ttCACGAGTGAAGATTTCCTGATCGCCGTGGGACCAGCCCAGACGCACCAGATAGTTCAGCAGTGCTtctg < 1:1295921‑M2/71‑5 (MQ=255) ttCACGAGTGAAGATTTCCTGATCGCCGTGGGACCAGCCCAGACGCACCAGATAGTTCAGCAGTGCTtctg < 1:2337062‑M2/71‑5 (MQ=255) ttCACGAGTGAAGATTTCCTGATCGCCGTGGGACCAGCCCAGACGCACCAGATAGTTCAGCAGTGCTtc > 1:1106836‑M2/1‑67 (MQ=255) ttCACGAGTGAAGATTTCCTGATCGCCGTGGGACCAGCCCAGACGCACCAGATAGTTCAGCAGTGCTtc > 1:938842‑M2/1‑67 (MQ=255) ttCACGAGTGAAGATTTCCTGATCGCCGTGGGACCAGCCCAGACGCACCAGATAGTTCAGCAGTGCTtc > 1:3226453‑M2/1‑67 (MQ=255) ttCACGAGTGAAGATTTCCTGATCGCCGTGGGACCAGCCCAGACGCACCAGATAGTTCAGCAGTGCTt > 1:2896305‑M2/1‑67 (MQ=255) tCACGAGTGAAGATTTCCTGATCGCCGTGGGACCAGCCCAGACGCACCAGATAGTTCAGCAGTGCTtct < 1:3459851‑M2/69‑4 (MQ=255) gAGTGAAGATTTCCTGATCGCCGTGGGACCAGCCCAGACGCACCAGATAGTTCAGCAGTGCTTCTGGCaaa > 1:1817582/1‑71 (MQ=255) gTGAAGATTTCCTGATCGCCGTGGGACCAGCCCAGACGCACCAGATAGTTCAGCAGTGCTTCTGGCAAAt > 1:1598488/1‑70 (MQ=255) aaGATTTCCTGATCGCCGTGGGACCAGCCCAGACGCACCAGATAGTTCAGCAGTGCTTCTGGCAAATAAcc > 1:2151644/1‑71 (MQ=255) aaGATTTCCTGATCGCCGTGGGACCAGCCCAGACGCACCAGATAGTTCAGCAGTGCTTCTGGCAAATAAcc > 1:2443754/1‑71 (MQ=255) aaGATTTCCTGATCGCCGTGGGACCAGCCCAGACGCACCAGATAGTTCAGCAGTGCTTCTGGCAAATAAcc > 1:644278/1‑71 (MQ=255) cTGATCGCCGTGGGACCAGCCCAGACGCACCAGATAGTTCAGCAGTGCTTCTGGCAAATAACCGTCATCAc > 1:2539625/1‑71 (MQ=255) cTGATCGCCGTGGGACCAGCCCAGACGCACCAGATAGTTCAGCAGTGCTTCTGGCAAATAACCGTCATCAc > 1:1522049/1‑71 (MQ=255) aTCGCCGTGGGACCAGCCCAGACGCACCAGATAGTTCAGCAGTGCTTCTGGCAAATAACCGTCATCACGa < 1:3678780/70‑1 (MQ=255) aTCGCCGTGGGACCAGCCCAGACGCACCAGATAGTTCAGCAGTGCTTCTGGCAAATAACCGTCATCACGa > 1:3213463/1‑70 (MQ=255) aTCGCCGTGGGACCAGCCCAGACGCACCAGATAGTTCAGCAGTGCTTCTGGCAAATAACCGTCATCACGAt < 1:64030/71‑1 (MQ=255) cGCCGTGGGACCAGCCCAGACGCACCAGATAGTTCAGCAGTGCTTCTGGCAAATAACCGt > 1:2285230/1‑60 (MQ=255) cGCCGTGGGACCAGCCCAGACGCACCAGATAGTTCAGCAGTGCTTCTGGCAAATAACCGTCATCACGATAc > 1:668011/1‑71 (MQ=255) cGCCGTGGGACCAGCCCAGACGCACCAGATAGTTCAGCAGTGCTTCTGGCAAATAACCGTCATCACGATAc > 1:2440227/1‑71 (MQ=255) ccGTGGGACCAGCCCAGACGCACCAGATAGTTCAGCAGTGCTTCTGGCAAATAACCGTCATCACGATACTg > 1:911753/1‑71 (MQ=255) cGTGGGACCAGCCCAGACGCACCAGATAGTTCAGCAGTGCTTCTGGCAAATAACCGTCATCACGATACTGc < 1:25317/71‑1 (MQ=255) gTGGGACCAGCCCAGACGCACCAGATAGTTCAGCAGTGCTTCTGGCAAATAACCGTCATCACGATACTGCa > 1:1246356/1‑71 (MQ=255) gTGGGACCAGCCCAGACGCACCAGATAGTTCAGCAGTGCTTCTGGCAAATAACCGTCATCACGATACTGCa > 1:2276651/1‑71 (MQ=255) gTGGGACCAGCCCAGACGCACCAGATAGTTCAGCAGTGCTTCTGGCAAATAACCGTCATCACGATACTGCa > 1:3455133/1‑71 (MQ=255) gggACCAGCCCAGACGCACCAGATAGTTCAGCAGTGCTTCTGGCAAATAACCGTCATCACGATACTGCAt > 1:2116189/1‑70 (MQ=255) ggACCAGCCCAGACGCACCAGATAGTTCAGCAGTGCTTCTGGCAAATAACCGTCATCACGATACTGCATTa < 1:3680587/71‑1 (MQ=255) ccAGCCCAGACGCACCAGATAGTTCAGCAGTGCTTCTGGCAAATAACCGt < 1:2226173/50‑1 (MQ=255) ccAGCCCAGACGCACCAGATAGTTCAGCAGTGCTTCTGGCAAATAACCGt < 1:2672408/50‑1 (MQ=255) ccAGCCCAGACGCACCAGATAGTTCAGCAGTGCTTCTGGCAAATAACCGTCATCACGATACTGCATTACGc > 1:2604886/1‑71 (MQ=255) ccAGCCCAGACGCACCAGATAGTTCAGCAGTGCTTCTGGCAAATAACCGTCATCACGATACTGCATTACGc > 1:24637/1‑71 (MQ=255) aGCCCAGACGCACCAGATAGTTCAGCAGTGCTTCTGGCAAATAACCGTCATCACGATACTGCATTACGCt > 1:1920162/1‑70 (MQ=255) aGCCCAGACGCACCAGATAGTTCAGCAGTGCTTCTGGCAAATAACCGTCATCACGATACTGCATTACGCt > 1:3546088/1‑70 (MQ=255) gCCCAGAAGCACCAGATAGTTCAGCAGTGCTtctgggctggtcccacggcgatcaggaaatcttcactcgt < 1:3440826‑M2/71‑41 (MQ=255) ccAGACGCACCAGATAGTTCAGCAGTGCTTCTGGCAAATAACCGTCATCACGATACTGCATTACGCTGACt < 1:56227/71‑1 (MQ=255) aGACGCACCAGATAGTTCAGCAGTGCTtctgggctggtcccacggcgatcaggaaatc > 1:999626‑M2/1‑27 (MQ=255) aCGCACCAGATAGTTCAGCAGTGCTtctgggctggtcccacggcgatcagg < 1:3026459‑M2/51‑27 (MQ=255) cGCACCAGATAGTTCAGCAGTGCTTCTGGCAAATAACCGTCATCAc > 1:3126388/1‑46 (MQ=255) aGATAGTTCAGCAGTGCTtctgggctggtcccacggcgatcaggaaatcttcactcgtgaagagatgatca > 1:1447906‑M2/1‑18 (MQ=255) aGATAGTTCAGCAGTGCTtctgggctggtcccacggcgatcaggaaatcttcactcgtgaagagatgatca > 1:1991713‑M2/1‑18 (MQ=255) aGATAGTTCAGCAGTGCTTCTGGCAAATAACCGTCATCACGATACTGCATTa < 1:3346288/52‑1 (MQ=255) gATAGTTCAGCAGTGCTTCTGGCAAATAACCGTCATCACGATACTGCATTACGCTGACTGCCCCGTGACGt > 1:1795832/1‑71 (MQ=255) gATAGTTCAGCAGTGCTTCTGGCAAATAACCGTCATCACGATACTGCATTACGCTGACTGCCCCGTGACGt > 1:814324/1‑71 (MQ=255) ttCAGCAGTGCTTCTGGCAAATAACCGTCATCACGATCCTGCATTACGCTGACTGCCCCGTGACGTTTGGa > 1:3698810/1‑71 (MQ=255) agcagTGCTTCTGGCAAATAACCGTCATCACGATACTGCATTACGCt < 1:2141523/47‑1 (MQ=255) agcagTGCTTCTGGCAAATAACCGTCATCACGATACTGCATTACGCt < 1:3707526/47‑1 (MQ=255) agcagTGCTTCTGGCAAATAACCGTCATCACGATACTGCATTACGCt < 1:2194917/47‑1 (MQ=255) agcagTGCTTCTGGCAAATAACCGTCATCACGATACTGCATTACGCt < 1:2383121/47‑1 (MQ=255) gcagTGCTTCTGGCAAATAACCGTCATCACGATACTg > 1:2439862/1‑37 (MQ=255) gTGCTTCTGGCAAATAACCGTCATCACGATACTGCATTACGCTGACTGCCCCGTGACGTTTGGACAGtttt < 1:1092631/71‑1 (MQ=255) gTGCTTCTGGCAAATAACCGTCATCACGATACTGCATTACGCTGACTGCCCCGTGACGTTTGGACAGtttt < 1:2282138/71‑1 (MQ=255) gTGCTTCTGGCAAATAACCGTCATCACGATACTGCATTACGCTGACTGCCCCGTGACGTTTGGACAGtttt < 1:2018679/71‑1 (MQ=255) tGCTTCTGGCAAATAACCGTCATCACGATACTGCATTACGCTGACTGCCCCGTGACGTTTGGACAGttttt < 1:498497/71‑1 (MQ=255) tGCTTCTGGCAAATAACCGTCATCACGATACTGCATTACGCTGACTGCCCCGTGACGTTTGGACAGttttt < 1:233408/71‑1 (MQ=255) tGCTTCTGGCAAATAACCGTCATCACGATACTGCATTACGCTGACTGCCCCGTGACGTTTGGACAGttttt < 1:2843703/71‑1 (MQ=255) gCTTCTGGCAAATAACCGTCATCACGATACTGCATTACGCTGa < 1:3427390/43‑1 (MQ=255) gCTTCTGGCAAATAACCGTCATCACGATACTGCATTACGCTGa < 1:678949/43‑1 (MQ=255) gCTTCTGGCAAATAACCGTCATCACGATACTGCATTACGCTGa < 1:807158/43‑1 (MQ=255) gCTTCTGGCAAATAACCGTCATCACGATACTGCATTACGCTGa < 1:3269566/43‑1 (MQ=255) cTTCTGGCAAATAACCGTCATCACGATACTGCATTACGCTGACTGCCCCGTGACGTTTGGACAGTTTTTTa > 1:894851/1‑71 (MQ=255) | TCTCTTCACGAGTGAAGATTTCCTGATCGCCGTGGGACCAGCCCAGACGCACCAGATAGTTCAGCAGTGCTTCTGGCAAATAACCGTCATCACGATACTGCATTACGCTGACTGCCCCGTGACGTTTGGACAGTTTTTTA > minE/1572887‑1573026 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |