| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | 1699109 = | 35 (0.590) | 6 (0.100) | 3/100 | NT | 14.6% | coding (989/1281 nt) | csiE | stationary phase inducible protein |
| ? | minE | 1699134 = | 36 (0.620) | coding (1014/1281 nt) | csiE | stationary phase inducible protein | |||||
ATGAGGAAAGTGGTCTGGTCGCGGTGATTTTCGGTGCCTGGCTAATGCAGGAAAACGATCTGCATGAAAAACAGATTATTCTTCTTACCGGGAATGATAGCGAGCGAGAAGCGCAGATTGAGCAGCAGTTACGCG > minE/1699067‑1699201 | atgaGGAAAGTGGTCTGGTCGCGGTGATTTTCGGTGCCTGGCTAATGCAGGAAAACGATCTGCATGaaaa > 1:3536359/1‑70 (MQ=255) gaGGAAAGTGGTCTGGTCGCGGTGATTTTCGGTGCCTGGCTAATGCAGGAAAACGATCTGCATGaaaaa > 1:3698210/1‑69 (MQ=255) gctatcattcccggtaagaagaataatctgttttTAATGCAGGAAAACGATCTGCATGAAAAACAGattat > 1:3224690‑M1/35‑71 (MQ=255) gctatcattcccggtaagaagaataatctgttttTAATGCAGGAAAACGATCTGCATGAAAAACAGattat > 1:886897‑M1/35‑71 (MQ=255) aGTGGTCTGGTCGCGGTGATTTTCGGTGCCTGGCTAATGCAGGAAAACGATCTGCATGAAAAACAGattat < 1:3388672/71‑1 (MQ=255) aGTGGTCTGGTCGCGGTGATTTTCGGTGCCTGGCTAATGCAGGAAAACGATCTGCATGAAAAACAGattat < 1:3601786/71‑1 (MQ=255) cgcgGTGATTTTCGGTGCCTGGCTAATGCAGGAAAACGATCTGCATGAAAAACAGATTATTCTTCTTACCg > 1:1141121/1‑71 (MQ=255) gcgGTGATTTTCGGTGCCTGGCTAATGCAGGAAAACGATCTGCATGAAAAACAGATTATTCTTCTTACCgg < 1:3542635/71‑1 (MQ=255) gcgGTGATTTTCGGTGCCTGGCTAATGCAGGAAAACGATCTGCATGAAAAACAGATTATTCTTCTTACCgg < 1:2288934/71‑1 (MQ=255) cgGTGATTTTCGGTGCCTGGCTAATGAAGGAAAACGATCTCCATGAAAAACAGATTATTCTTCTTAc > 1:2613009/1‑67 (MQ=255) ggTGATTTTCGGTGCCTGGCTAATGCAGGAAAACGATCTGCATGAAAAACAGATTATTCTTCTTACCGGGa < 1:986257/71‑1 (MQ=255) ggTGATTTTCGGTGCCTGGCTAATGCAGGAAAACGATCTGCATGAAAAACAGATTATTCTTCTTACCGGGa < 1:3097750/71‑1 (MQ=255) aTTTTCGGTGCCTGGCTAATGCAGGAAAACGATCTGCATGAAAAACAGATTATTCTTCTTACCGGGAATGa > 1:1268027/1‑71 (MQ=255) ttttCGGTGCCTGGCTAATGCAGGAAAACGATCTGCATGAAAAACAGATTATTCTTCTTACCGGGa < 1:1890227/66‑1 (MQ=255) ttttCGGTGCCTGGCTAATGCAGGAAAACGATCTGCATGAAAAACAGATTATTCTTCTTACCGGGa < 1:2526259/66‑1 (MQ=255) ataatctgtttttcatgcagatcgttttcctgcattaAAAACAGATTATTCTTCTTACCGGGAATGATagc > 1:886897‑M2/38‑71 (MQ=255) ataatctgtttttcatgcagatcgttttcctgcattaAAAACAGATTATTCTTCTTACCGGGAATGATagc > 1:3224690‑M2/38‑71 (MQ=255) cGGTGCCTGGCTAATGCAGGAAAACGATCTGCATGAAAAACAGATTATTCTTCTTACCGGGAATGATagc > 1:248055/1‑70 (MQ=255) ggTGCCTGGCTAATGCAGGAAAACGATCTGCATGAAAAACAGATTATTCTTCTTACCGGGAATGATagcg < 1:1230972/70‑1 (MQ=255) ccTGGCTAATGCAGGAAAACGATCTGCATGAAAAACAGatta > 1:362880/1‑42 (MQ=255) ccTGGCTAATGCAGGAAAACGATCTGCATGAAAAACAGatta > 1:977313/1‑42 (MQ=255) ccTGGCTAATGCAGGAAAACGATCTGCATGAAAAACAGatta > 1:981675/1‑42 (MQ=255) ccTGGCTAATGCAGGAAAACGATCTGCATGAAAAACAGATTATTCTTCTTACCGGGAATGATagcgagc > 1:427489/1‑69 (MQ=255) ccTGGCTAATGCAGGAAAACGATCTGCATGAAAAACAGATTATTCTTCTTACCGGGAATGATagcgagc > 1:1496080/1‑69 (MQ=255) cTGGCTAATGCAGGAAAACGATCTGCATGAAAAACAGATTATTCTTCTTACCGGGAATGATagcgagc > 1:2398153/1‑68 (MQ=255) cTGGCTAATGCAGGAAAACGATCTGCATGAAAAACAGATTATTCTTCTTACCGGGAATGATAGcgagcgag < 1:446867/71‑1 (MQ=255) cTGGCTAATGCAGGAAAACGATCTGCATGAAAAACAGATTATTCTTCTTACCGGGAATGATAGcgagcgag < 1:3026909/71‑1 (MQ=255) tGGCTAATGCAGGAAAACGATCTGCATGAAAAACAGATTATTCTTCTTACCGGGAATGATAGcgagcgag > 1:1676923/1‑70 (MQ=255) tGGCTAATGCAGGAAAACGATCTGCATGAAAAACAGATTATTCTTCTTACCGGGAATGATAGcgagcgag > 1:3217827/1‑70 (MQ=255) tGGCTAATGCAGGAAAACGATCTGCATGAAAAACAGATTATTCTTCTTACCGGGAATGATAGcgagcgag > 1:349315/1‑70 (MQ=255) gCTAATGCAGGAAAACGATCTGCATGAAAAACAGATTATTCTTCTTACCGGGAATGATa > 1:317798/1‑59 (MQ=255) tcatgcagatcgttttcctgcattaAAAACAGATTATTCTTCTTACCGGGAATGATAGCGAGCGAGAAgcg > 1:1182170‑M2/26‑71 (MQ=255) catgcagatcgttttcctgcattaAAAACAGATTATTCTTCTTAc > 1:439960‑M2/25‑45 (MQ=255) catgcagatcgttttcctgcattaAAAACAGATTATTCTTCTTAc > 1:861952‑M2/25‑45 (MQ=255) catgcagatcgttttcctgcattaAAAACAGATTATTCTTCTTAc > 1:328828‑M2/25‑45 (MQ=255) aTGCAGGAAAACGATCTGCATGAAAAACAGATTATTCTTCTTACCGGGAATGATAGCGAGCGAGAAgcg > 1:53737/1‑69 (MQ=255) ggAAAACGATCTGCATGAAAAACAGATTATTCTTCTTACCGGGAATGATAGCGAGCGAGAAGCGCAGAtt < 1:235527/70‑1 (MQ=255) ggAAAACGATCTGCATGAAAAACAGATTATTCTTCTTACCGGGAATGATAGCGAGCGAGAAGCGCAGATTg < 1:834550/71‑1 (MQ=255) gAAAACGATCTGCATGAAAAACAGATTATTCTTCTTACCGGGAATGATAGCGAGCGAGAAGCGCAGATTGa < 1:1373222/71‑1 (MQ=255) gAAAACGATCTGCATGAAAAACAGATTATTCTTCTTACCGGGAATGATAGCGAGCGAGAAGCGCAGATTGa < 1:618205/71‑1 (MQ=255) aaaCGATCTGCATGAAAAACAGATTATTCTTCTTACCGGGAATGATAGCGAGCGAGAAGCGCAGATTGagc < 1:518475/71‑1 (MQ=255) aaaCGATCTGCATGAAAAACAGATTATTCTTCTTACCGGGAATGATAGCGAGCGAGAAGCGCAGATTGagc < 1:3164237/71‑1 (MQ=255) aaCGATCTGCATGAAAAACAGATTATTCTTCTTACCGGGAATGATAgcgagcga < 1:677358/54‑1 (MQ=255) aCGATCTGCATGAAAAACAGATTATTCTTCTTACCGGGAATGATAGCGAGCGAGAAGCGCAGATTGagcag < 1:3348809/71‑1 (MQ=255) cGATCTGCATGAAAAACAGATTATTCTTCTTACCGGGAATGATAGCGAGCGAGAAGCGCAGATTGagcag < 1:3377802/70‑1 (MQ=255) gATCTGCATGAAAAACAGATTATTCTTCTTACCGGGAATGATAGCGAGCGAGAAGCGCAg > 1:2528820/1‑60 (MQ=255) gCATGAAAAACAGATTATTCTTCTTACCGGGAATg < 1:44102/35‑1 (MQ=255) gCATGAAAAACAGATTATTCTTCTTACCGGGAATGATagcga < 1:2754222/42‑1 (MQ=255) cATGAAAAACAGATTATTCTTCTTACCGGGAATGATAGCGAGCGAGAAg > 1:616687/1‑49 (MQ=255) cATGAAAAACAGATTATTCTTCTTACCGGGAATGATAGCGAGCGAGAAGCGCAGATTGAGCAGCAGTTAcg > 1:2066641/1‑71 (MQ=255) aTGAAAAACAGATTATTCTTCTTACCGGGAATGATAGCGAGCGAGAAGCGCAGATTGAGCAGCAGTTAcgc > 1:2275054/1‑71 (MQ=255) aTGAAAAACAGATTATTATTCTTACAGGGAATGATAGCGAGCGAGAAg > 1:2270756/1‑48 (MQ=255) tGAAAAACAGATTATTCTTCTTACCGGGAATGATAGCGAGCGAGAAGCGCAGATTGAGCAGCAGTTAcgcg < 1:2742952/71‑1 (MQ=255) tGAAAAACAGATTATTCTTCTTACCGGGAATGATAGCGAGCGAGAAGCGCAGATTGAGCAGCAGTTAcgcg < 1:2364787/71‑1 (MQ=255) tGAAAAACAGATTATTCTTCTTACCGGGAATGATAGCGAGCGAGAAGCGCAGATTGAGCAGCAGTTAcgcg < 1:196105/71‑1 (MQ=255) gAAAAACAGATTATTCTTCTTACCGGGAATGATAgcgagcgata < 1:2124082/44‑3 (MQ=255) gAAAAACAGATTATTCTTCTTACCGGGAATGATAGCGAGCgaga < 1:2316/44‑1 (MQ=255) gAAAAACAGATTATTCTTCTTACCGGGAATGATAGCGAGCGAGAAGCGCAGATTGAGCAGCAGTTAcgcg > 1:634466/1‑70 (MQ=255) gAAAAACAGATTATTCTTCTTACCGGGAATGATAGCGAGCGAGAAGCGCAGATTGAGCAGCAGTTAcgcg > 1:3197854/1‑70 (MQ=255) aAAAACAGATTATTCTTCTTACCGGGAATGATagcg > 1:2974300‑M2/2‑36 (MQ=255) aAAAACAGATTATTCTTCTTACCGGGAATGATAGcgagcgag < 1:2450767‑M2/41‑1 (MQ=255) aAAAACAGATTATTCTTCTTACCGGGAATGATAGCGAGCGAGAAGCGCAGAt > 1:2580740‑M2/2‑52 (MQ=255) aaaaCAGATTATTCTTCTTACCGGGAATGATAGCGAGCGAGAAGCGCAGATTGa < 1:2554321/54‑1 (MQ=255) | ATGAGGAAAGTGGTCTGGTCGCGGTGATTTTCGGTGCCTGGCTAATGCAGGAAAACGATCTGCATGAAAAACAGATTATTCTTCTTACCGGGAATGATAGCGAGCGAGAAGCGCAGATTGAGCAGCAGTTACGCG > minE/1699067‑1699201 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |