| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | = 1885816 | 47 (0.800) | 5 (0.090) | 3/92 | NT | 9.3% | coding (1278/2757 nt) | barA | hybrid sensory histidine kinase, in two‑component regulatory system with UvrY |
| ? | minE | = 1885828 | 55 (1.030) | coding (1290/2757 nt) | barA | hybrid sensory histidine kinase, in two‑component regulatory system with UvrY | |||||
ATTACAGCAAATCATCACTAACCTGGTGGGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTGAAGTGCAGATTCGGGATACCG > minE/1885762‑1885895 | aTTACAGCAAATCATCACTAACCTGGTGGGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATattc < 1:1346173‑M2/71‑5 (MQ=255) ttACAGCAAATCATCACTAACCTGGTGGGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATattc > 1:55978‑M2/1‑66 (MQ=255) tACAGCAAATCATCACTAACCTGGTGGGGATTGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTg > 1:763784/1‑71 (MQ=255) tACAGCAAATCATCACTAACCTGGTGGGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTg > 1:3358665/1‑71 (MQ=255) aCAGCAAATCATCACTAACCTGGTGGGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTgg > 1:2978413/1‑71 (MQ=255) aCAGCAAATCATCACTAACCTGGTGGGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTgg > 1:1640514/1‑71 (MQ=255) cAGCAAATCATCACTAACCTGGTGGGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATattctcgt > 1:1289702‑M2/1‑63 (MQ=255) aGCAAATCATCACTAACCTGGTGGGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTGGTa < 1:1200715/71‑1 (MQ=255) cAAATCATCACTAACCTGGTGGGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTGGTAGa < 1:46751/71‑1 (MQ=255) aaaTCATCACTAACCTGGTGGGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTGGTAGaa < 1:2245961/71‑1 (MQ=255) atcatcACTAACCTGGTGGGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTGGTAGaaaa < 1:3113311/71‑1 (MQ=255) atcatcACTAACCTGGTGGGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTGGTAGaaaa < 1:3014311/71‑1 (MQ=255) atcatcACTAACCTGGTGGGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTGGTAGaaaa < 1:3186500/71‑1 (MQ=255) atcatcACTAACCTGGTGGGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTGGTAGaaaa < 1:844728/71‑1 (MQ=255) atcatcACTAACCTGGTGGGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTGGTAGaaaa < 1:3518845/71‑1 (MQ=255) tcatcaCTAACCTGGTGGGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTGGTAGaaaaa > 1:1464821/1‑71 (MQ=255) catcaCTAACCTGGTGGGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAAc > 1:1734538/1‑71 (MQ=255) catcaCTAACCTGGTGGGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAAc > 1:2938386/1‑71 (MQ=255) catcaCTAACCTGGTGGGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAAc > 1:2267712/1‑71 (MQ=255) atcaCTAACCTGGTGGGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAACg < 1:831560/71‑1 (MQ=255) atcaCTAACCTGGTGGGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAACg < 1:11288/71‑1 (MQ=255) atcaCTAACCTGGTGGGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAACg < 1:3244712/71‑1 (MQ=255) aCTAACCTGGTGGGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTgg < 1:2294201/58‑1 (MQ=255) aaCCTGGTGGGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATa < 1:1248714‑M2/49‑2 (MQ=255) aCCTGGTGGGGAATGCAATTAAATTCACCGAGAATGGCGACATTGATATTCTGGTAGAAAAACGTGCGCTg < 1:91150/71‑1 (MQ=255) aCCTGGTGGGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAACGTGCGCt < 1:668023/70‑1 (MQ=255) cTGGTGGGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAACGTgc < 1:149422/65‑1 (MQ=255) cTGGTGGGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAACGTgc < 1:3410687/65‑1 (MQ=255) cTGGTGGGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAg > 1:1971426/1‑71 (MQ=255) tggtggGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTGGTa > 1:1863483/1‑53 (MQ=255) gggAATGCAATTAAATTCACCTAGAATGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATAc < 1:703981/71‑1 (MQ=255) gggAATGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATAc < 1:2441340/71‑1 (MQ=255) gAATGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAACGTgc < 1:3261784/57‑1 (MQ=255) tGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAg > 1:3273906/1‑71 (MQ=255) tGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTGGT‑GGAAAACGTGCGCTGAGTAATACCAAAGt < 1:2875107/71‑1 (MQ=255) cAATTAAATTCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTg < 1:2985906/71‑1 (MQ=255) aaaTTCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAACGTgcgc > 1:388398/1‑49 (MQ=255) aaaTTCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATa > 1:830018/1‑58 (MQ=255) aaaTTCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGAt > 1:663932/1‑71 (MQ=255) aTTCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTg < 1:3204714/71‑1 (MQ=255) ttCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTg < 1:3602630/70‑1 (MQ=255) ttCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTg > 1:1824649/1‑70 (MQ=255) ttCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTg > 1:3003439/1‑70 (MQ=255) tCACCGAGAATGGCAACATTGATattctcggtgaatttaattgcattccccaccaggttagtgatgattt < 1:844464‑M2/70‑48 (MQ=255) tCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTg > 1:79854/1‑69 (MQ=255) aCCGAGAATGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTGAAGt < 1:96146/71‑1 (MQ=255) cGAGAATGGCAACATTGATattctcggtgaatttaattgcattccccaccaggtt > 1:2414479‑M2/1‑19 (MQ=255) cGAGAATGGCAACATTGATattctcggtgaatttaattgcattccccaccaggtt > 1:1097085‑M2/1‑19 (MQ=255) cGAGAATGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTGAAGTGc < 1:3571853/71‑1 (MQ=255) agaATGGCAACATTGATattctcggtgaatttaattgcattccccaccaggttag < 1:2838328‑M2/55‑39 (MQ=255) agaATGGCAACATTGATattctcggtgaatttaattgcattccccaccaggttag < 1:11053‑M2/55‑39 (MQ=255) gaATGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTGAAGTGCAGa < 1:3357887/71‑1 (MQ=255) aaTGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCaa < 1:1571420/50‑1 (MQ=255) aaTGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCaa < 1:2286570/50‑1 (MQ=255) aaTGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTGAAGTGCAGAt > 1:2517057/1‑71 (MQ=255) aaTGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTGAAGTGCAGAt > 1:2664824/1‑71 (MQ=255) aTGGCAACATTGATATTCTTGTAGAAAAACGTGCGCTGAGTAATACCa < 1:3724253/48‑1 (MQ=255) aTGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTGAAGTGCAGAtt < 1:2411393/71‑1 (MQ=255) tGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTg < 1:274517/52‑1 (MQ=255) tGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTGAAGTGCAGATTc < 1:1438518/71‑1 (MQ=255) gCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTGAAGTGCAGATTCgg < 1:2558720/71‑1 (MQ=255) gCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTGAAGTGCAGATTCgg < 1:25442/71‑1 (MQ=255) cAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTGAAGTGCAGATTCggg < 1:3700847/71‑1 (MQ=255) cAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTGAAGTGCAGATTCggg < 1:2950005/71‑1 (MQ=255) cAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTGAAGTGCAGATTCgg > 1:1001296/1‑70 (MQ=255) aaCATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTGAAGTGCAGATTCGGGa > 1:2236124/1‑71 (MQ=255) aCATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGt > 1:2681573/1‑46 (MQ=255) aCATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTGAAGTGCAGATTCGGGAt < 1:1489447/71‑1 (MQ=255) aCATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTGAAGTGCAGATTCGGGAt < 1:536547/71‑1 (MQ=255) aCATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTGAAGTGCAGATTCGGGAt < 1:494421/71‑1 (MQ=255) aTTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTGAAGTGCAGATTCGGGATAc < 1:1613643/71‑1 (MQ=255) tGATATTATGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTGAAGTGCAGATTCGGGATACCg > 1:1705632/1‑71 (MQ=255) tGAAATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTGAAGTGCAGATTCGGGATACCg > 1:2606407/1‑71 (MQ=255) | ATTACAGCAAATCATCACTAACCTGGTGGGGAATGCAATTAAATTCACCGAGAATGGCAACATTGATATTCTGGTAGAAAAACGTGCGCTGAGTAATACCAAAGTGCAGATTGAAGTGCAGATTCGGGATACCG > minE/1885762‑1885895 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |