| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | minE | 2704186 = | 53 (0.900) | 4 (0.080) | 3/90 | NT | 6.9% | coding (397/1287 nt) | damX | hypothetical protein |
| ? | minE | 2704220 = | 62 (1.190) | coding (431/1287 nt) | damX | hypothetical protein | |||||
GGTTCTGCGCTAAAAGCCCCCTCGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGATCAGGCGAATGGCGTGCAGCCAGCGCCGGGAACCACGTCTGCGGAAAAT > minE/2704150‑2704287 | ggtTCTGCGCTAAAAGCCCCCTCGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCt > 1:3378729/1‑71 (MQ=255) ttCTGCGCTAAAAGCCCCCTCGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTg < 1:2858819/71‑1 (MQ=255) cTGCGCTAAAAGCCCCCTCGACCACTTCAAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCt > 1:3245905/1‑71 (MQ=255) gcgcTAAAAGCCCCCTCGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTgg > 1:3198074/1‑71 (MQ=255) cgcTAAAAGCCCCTTCGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATAGATCTTGCTgg > 1:2920512/1‑70 (MQ=255) cgcTAAAAGCCCCCTCGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCt < 1:863859/68‑1 (MQ=255) cgcTAAAAGCCCCCTCGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCt < 1:3166717/68‑1 (MQ=255) cgcTAAAAGCCCCCTCGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTgg > 1:1908422/1‑70 (MQ=255) cgcTAAAAGCCCCCTCGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTgg > 1:902169/1‑70 (MQ=255) gcTAAAAGCCCCCTCGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCa < 1:442007/71‑1 (MQ=255) tAAAAGCCCCCTCGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAAt > 1:1951634/1‑71 (MQ=255) aaaGCCCCCTCGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAAt < 1:3070770/69‑1 (MQ=255) aGCCCCCTCGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGa < 1:3146218/71‑1 (MQ=255) gCCCCCTCGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGAc > 1:3136029/1‑71 (MQ=255) gCCCCCTCGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGAc > 1:1357631/1‑71 (MQ=255) ccccTCGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGAcc > 1:2135434/1‑70 (MQ=255) ccccTCGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGAcc > 1:2271766/1‑70 (MQ=255) cccTCGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCg > 1:1488628/1‑70 (MQ=255) cccTCGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGa > 1:2778928/1‑71 (MQ=255) cccTCGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGa > 1:849321/1‑71 (MQ=255) ccTCGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCg < 1:1657853/69‑1 (MQ=255) ccTCGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCg < 1:647935/69‑1 (MQ=255) ccTCGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGAt > 1:2634836/1‑71 (MQ=255) cTCGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCt < 1:1286715/55‑1 (MQ=255) cTCGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCt < 1:2731471/55‑1 (MQ=255) cTCGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCaa > 1:1299347/1‑60 (MQ=255) cTCGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGAt > 1:1044657/1‑70 (MQ=255) cTCGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGAt > 1:2735251/1‑70 (MQ=255) cTCGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGAt > 1:2093616/1‑70 (MQ=255) cGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCaa > 1:63094/1‑58 (MQ=255) cGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCaa > 1:455397/1‑58 (MQ=255) cGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCaa > 1:2435616/1‑58 (MQ=255) gACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGATCAg < 1:249148/70‑1 (MQ=255) ccACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGATCAGGc > 1:871262/1‑70 (MQ=255) ccACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGATCAGGc < 1:3057757/70‑1 (MQ=255) aCTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGATCAGGCGaa < 1:290277/71‑1 (MQ=255) cTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGATCAGGCGAAt > 1:114080/1‑71 (MQ=255) ccAGCGATCAAACCGCGTTTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGATCa > 1:2772490/1‑61 (MQ=255) ccAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGATCAGGCGAAt < 1:1120765/68‑1 (MQ=255) ccAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGATCAGGCGAAt < 1:2193855/68‑1 (MQ=255) ccAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGATCAGGCGAATGGc > 1:607671/1‑71 (MQ=255) cAGCGATCAAACCGCGTCTGGCTAGAAGAGTATTGATCTTGCTGGCAATGCGACCGATCAGGCGAATGGCg < 1:1888498/71‑1 (MQ=255) cAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGATCAGGCGAATGGCg < 1:1259291/71‑1 (MQ=255) cAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGATCAGGCGAATGGCg < 1:2537485/71‑1 (MQ=255) cAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGATCAGGCGAATGGCg < 1:644835/71‑1 (MQ=255) aGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGATCAGGCGaa < 1:3347067/65‑1 (MQ=255) gCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCaa > 1:1463498/1‑46 (MQ=255) gCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGATCAGGCGAATGGc < 1:974840/68‑1 (MQ=255) gCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGATCAGGCGAATGGCGTg > 1:2899551/1‑71 (MQ=255) cGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGATCAGGCGAATGGCGTg > 1:1658063/1‑70 (MQ=255) cGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGATCAGGCGAATGGCGTg > 1:2487603/1‑70 (MQ=255) GATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGATCAGGCGAAt < 1:3357763‑M1/63‑1 (MQ=255) GATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGATCAGGCGAAt < 1:3127278‑M1/63‑1 (MQ=255) GATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGATCAGGCGAATGGCGTGc > 1:530437‑M1/1‑70 (MQ=255) ATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGATCAGGCGa > 1:109806‑M1/1‑60 (MQ=255) ATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGATCAGGCGa > 1:569210‑M1/1‑60 (MQ=255) TCAAACCTCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCa > 1:933198‑M1/1‑41 (MQ=255) CAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGATCAGGCGAATGGCGTGcagc > 1:432150‑M1/1‑70 (MQ=255) aatactcttctcgccagacgcggtttgatcTTGCTGGCAATGCGACCGATCAGGCGAATGGCGTGcagc > 1:2825062‑M2/31‑69 (MQ=255) AAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGATCAGGCGAATGGCGTGcagcc > 1:2290074‑M1/1‑70 (MQ=255) AAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGATCAGGCGAATGGCGTGcagcc > 1:2857770‑M1/1‑70 (MQ=255) aCCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGATCAGGCGAATGGCGTGcagccagc > 1:1696131/1‑71 (MQ=255) aCCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGATCAGGCGAATGGCGTGcagcca > 1:552533/1‑69 (MQ=255) aCCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGATCAGGCGAATGGCGTGcagcca > 1:1734128/1‑69 (MQ=255) cgcgTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCg < 1:1341550/44‑1 (MQ=255) tCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGATCAGGCGAATGGCGTGca > 1:2191213/1‑59 (MQ=255) tcgccagacgcggtttgatcTTGCTGGCAATGCGACCGa < 1:2882528‑M2/19‑1 (MQ=255) tGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGATCAgg > 1:972737/1‑44 (MQ=255) tGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGATCAGGCGAATGGCGTGcagccag < 1:1905070/62‑1 (MQ=255) tGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGATCAGGCGAATGGCGTGCAGCCAGCGCCGGGaa > 1:1342314/1‑71 (MQ=255) gccagacgcggtttgatcTTGCTGGCAATGCGACCGATc > 1:1471989‑M2/19‑39 (MQ=255) gccagacgcggtttgatcTTGCTGGCAATGCGACCGATc > 1:562717‑M2/19‑39 (MQ=255) gCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGATCAGGCGaa < 1:1640720/46‑1 (MQ=255) gCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGATCAGGCGaa < 1:2836399/46‑1 (MQ=255) gCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGATCAGGCGAATGGCGTGCAGCCAGCGCCGGGAAc > 1:228975/1‑70 (MQ=255) gagaAGAGTATTGATCTTGCTGGCAATGCGACCGATCa > 1:1686393/1‑38 (MQ=255) gagaAGAGTATTGATCTTGCTGGCAATGCGACCGATCa > 1:939901/1‑38 (MQ=255) gagaAGAGTATTGATCTTGCTGGCAATGCGACCGATCa > 1:1953666/1‑38 (MQ=255) gagaAGAGTATTGATCTTGCTGGCAATGCGACCGATCAGGCGAATg > 1:119752/1‑46 (MQ=255) gagaAGAGTATTGATCTTGCTGGCAATGCGACCGATCAGGCGAATg > 1:777823/1‑46 (MQ=255) gagaAGAGTATTGATCTTGCTGGCAATGCGACCGATCAGGCGAATGGCGTGcagccag > 1:2754983/1‑58 (MQ=255) gagaAGAGTATTGATCTTGCTGGCAATGCGACCGATCAGGCGAATGGCGTGcagccag > 1:2952281/1‑58 (MQ=255) agTATTGATCTTGCTGGCAATGCGACCGATCAGGCg < 1:2205113/36‑1 (MQ=255) agTATTGATCTTGCTGGCAATGCGACCGATCAGGCg < 1:2917191/36‑1 (MQ=255) agTATTGATCTTGCTGGCAATGCGACCGATCAGGCGAATGGCGTGCAGCCAGCGCCGGGAACCACGTCTGc > 1:1612129/1‑71 (MQ=255) tATTGATCTTGCTGGCAATGCGACCGATCAGGCGAATGGCGTGcag < 1:431392/46‑1 (MQ=255) ttgatcTTGCTGGCAATGCGACCGATCAGGCGAATGGCGTGCAGCCAGCGCCGGGAACCAc > 1:865850‑M2/7‑61 (MQ=255) ttgatcTTGCTGGCAATGCGACCGATCAGGCGAATGGCGTGCAGCCAGCGCCGGGAACCACGTCTGCGGa > 1:1295032‑M2/7‑70 (MQ=255) ttgatcTTGCTGGCAATGCGACCGATCAGGCGAATGGCGTGCAGCCAGCGCCAGGAACCACGTCTGCGGa > 1:1350463‑M2/7‑70 (MQ=255) gatcTTGCTGGCAATGCGACCGATCAGGCGAATGGCGTGCAGCCAGCGCCGGGAACCACGTCTGCGGaaaa > 1:305985‑M2/5‑71 (MQ=255) gatcTTGCTGGCAATGCGACCGATCAGGCGAATGGCGTGCAGCCAGCGCCGGGAACCACGTCTGCGGaaaa > 1:344555‑M2/5‑71 (MQ=255) tcTTGCTGGCAATGCGACCGATCAGGCGAATGGCGTGCAGCCAGCGCCGGGAACCACGTCTGCGGAAAAt > 1:2535411‑M2/3‑70 (MQ=255) ttGCTGGCAATGCGACCGATCAGGCGAATGGCGTGCAGCCAGCGCCGGGa < 1:2872555/50‑1 (MQ=255) ttGCTGGCAATGCGACC‑ATCAGGCGAATGGCGTGCAGCCAGCGCCGGGAACCACGTCTGAGGaaaa > 1:2011858/1‑66 (MQ=255) | GGTTCTGCGCTAAAAGCCCCCTCGACCACTTCCAGCGATCAAACCGCGTCTGGCGAGAAGAGTATTGATCTTGCTGGCAATGCGACCGATCAGGCGAATGGCGTGCAGCCAGCGCCGGGAACCACGTCTGCGGAAAAT > minE/2704150‑2704287 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |