| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,390,615 | A→G | 7.6% | Q249Q (CAA→CAG) | nfo → | endonuclease IV with intrinsic 3'‑5' exonuclease activity |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,390,615 | 0 | A | G | 7.6% | 386.1 / 17.7 | 132 | Q249Q (CAA→CAG) | nfo | endonuclease IV with intrinsic 3'‑5' exonuclease activity |
| Reads supporting (aligned to +/- strand): ref base A (60/62); new base G (2/8); total (62/70) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.02e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.80e-01 | |||||||||||
Only 100 of 138 total aligned reads displayed.
GCCGCGTTGACCGCCATCATAGCCTCGGTGAAGGCAATATCGGTCATGATGCGTTCCGCTGGATCATGCAAGACGACCGTTTCGACGGCATTCCGCTGATCCTCGAAACCATCAACCCGGATATCTGGGCAGAAGAGATC > minE/1390545‑1390684 | gCCGCGTTGACCGCCATCATAGCCTCGGTGAAGGCAATATCGGTCATGATGCGTTCCGCTGGATCATGCaa < 1:1097718/71‑1 (MQ=255) ccGCGTTGACCGCCATCATAGCCTCGGTGAAGGCAATATCGGTCATGATGCGTTCCGCTGGATCATGCAAg < 1:2729056/71‑1 (MQ=255) ccGCGTTGACCGCCATCATAGCCTCGGTGAAGGCAATATCGGTCATGATGCGTTCCGCTGGATCATGCAAg < 1:2090965/71‑1 (MQ=255) ccGCGTTGACCGCCATCATAGCCTCGGTGAAGGCAATATCGGTCATGATGCGTTCCGCTGGATCATGCAAg < 1:3685389/71‑1 (MQ=255) gTTGACCGCCATCATAGCCTCGGTGAAGGCAATATCGGTCATGATGCGTTCCGCTGGATCATGCAAgacga < 1:2706011/71‑1 (MQ=255) gTTGACCGCCATCATAGCCTCGGTGAAGGCAATATCGGTCATGATGCGTTCCGCTGGATCATGCAAgac > 1:1360636/1‑69 (MQ=255) gACCGCCATCATAGCCTCGGTGAAGGCAATATCGGTCATGATGCGTTCCGCTGGATCATGCAAGACGACCg > 1:3123553/1‑71 (MQ=255) gACCGCCATCATAGCCTCGGTGAAGGCAATATCGGTCATGATGCGTTCCGCTGGATCATGCAAGACGACCg > 1:2959623/1‑71 (MQ=255) aCCGCCATCATAGCCTCGGTGAAGGCAATATCGTTCATGATGCGTTCCGCTGGATCATGCAAGACGACCGt > 1:2928315/1‑71 (MQ=255) aCCGCCATCATAGCCTCGGTGAAGGCAATATCGGTCATGATGCGTTCCGCTGGATCATGCAAGACGACCGt > 1:1582249/1‑71 (MQ=255) aCCGCCATCATAGCCTCGGTGAAGGCAATATCGGTCATGATGCGTTCCGCTGGATCATGCAAGACGACCGt < 1:3113875/71‑1 (MQ=255) cGCCATCATAGCCTCGGTGAAGGCAATATCGGTCATGATGCGTTCCGCTGGATCATGCAAGACGACCGttt > 1:3448315/1‑71 (MQ=255) cGCCATCATAGCCTCGGTGAAGGCAATATCGGTCATGATGCGTTCCGCTGGATCATGCAAGACGACCGttt > 1:519994/1‑71 (MQ=255) cGCCATCATAGCCTCGGTGAAGGCAATATCGGTCATGATGCGTTCCGCTGGATCATGCAAGACGACCGtt > 1:3162511/1‑70 (MQ=255) gCCATCATAGCCTCGGTGAAGGCAATATCGGTCATGATGCGTTCCGCTGGATCATGCAAGACGACCGTTTc < 1:1253868/71‑1 (MQ=255) gCCATCATAGCCTCGGTGAAGGCAATATCGGTCATGATGCGTTCCGCTGGATCATGCAAGACGACCGTTTc < 1:672887/71‑1 (MQ=255) ccATCATAGCCTCGGTGAAGGCAATATCGGTCATGATGCGTTCCGCTGGATCATGCAAGACGACCGTTTc > 1:1486726/1‑70 (MQ=255) ccATCATAGCCTCGGTGAAGGCAATATCGGTCATGATGCGTTCCGCTGGATCATGCAAGACGACCGTTTCg < 1:1176563/71‑1 (MQ=255) ccATCATAGCCTCGGTGAAGGCAATATCGGTCATGATGCGTTCCGCTGGATCATGCAAGACGACCGTTTCg < 1:1640257/71‑1 (MQ=255) ccATCATAGCCTCGGTGAAGGCAATATCGGTCATGATGCGTTCCGCTGGATCATGCAAGACGACCGTTTCg < 1:520104/71‑1 (MQ=255) catcatAGCCTCGGTGAAGGCAATATCGGTCATGATGCGTTCCGCTGGATCATGCAAGACGACCGTTTCGa < 1:1814213/71‑1 (MQ=255) atcatAGCCTCGGTGAAGGCAATATCGGTCATGATGCGTTCCGCTGGATCATGCAAGACGACCGTTTCGAc < 1:3187645/71‑1 (MQ=255) atcatAGCCTCGGTGAAGGCAATATCGGTCATGATGCGTTCCGCTGGATCATGCAAGACGACCGTTTCGAc < 1:2572562/71‑1 (MQ=255) catAGCCTCGGTGAAGGCAATATCGGTCATGATGCGTTCCGCTGGATCATGCAAGACGACCGTTTCGACgg > 1:2677675/1‑71 (MQ=255) tAGCCTCGGTGAAGGCAATATCGGTCATGATGCGTTCCGCTGGATCATGCAAGACGACCGTTTCGACGGCa < 1:2768596/71‑1 (MQ=255) gcgtCGGTGAAGGCAATATCGGTCATGATGCGTTCCGCTGGATCATGCAAGACGACCGTTTCGACGGCAt < 1:403662/67‑1 (MQ=255) gCCTCGGTGAAGGCAATATCGGTCATGATGCGTTCCGCTGGATCATGCAGGACGACCGTTTCGACGGCAt < 1:2474625/70‑1 (MQ=255) gCCTCGGTGAAGGCAATATCGGTCATGATGCGTTCCGCTGGATCATGCAGGACGACCGTTTCGACGGCAt < 1:2700673/70‑1 (MQ=255) gCCTCGGTGAAGGCAATATCGGTCATGATGCGTTCCGCTGGATCATGCAAGACGACCGTTTCGACGGCAt < 1:3076411/70‑1 (MQ=255) gCCTCGGTGAAGGCAATATCGGTCATGATGCGTTCCGCTGGATCATGCAAGACGACCGTTTCGACGGCAt < 1:2016601/70‑1 (MQ=255) ccTCGGTGAAGGCAATATCGGTCATGATGCGTTCCGCTGGATCATGCAAGACGACCGTTTCGa < 1:1876822/63‑1 (MQ=255) ccTCGGTGAAGGCAATATCGGTCATGATGCGTTCCGCTGGATCATGCAAGACGACCGTTTCGa < 1:1217558/63‑1 (MQ=255) ccTCGGTGAAGGCAATATCGGTCATGATGCGTTCCGCTGGATCATGCAAGACGACCGTTTCGACGGCATTc > 1:2551911/1‑71 (MQ=255) cTCGGTGAAGGCAATATCGGTCATGATGCGTTCCGCTGGATCATGCAAGACGACCGTTTCg < 1:2161016/61‑1 (MQ=255) tCGGTGAAGGCAATATCGGTCATGATGCGTTCCGCTGGATCATGCAAGACGACCGTTTCGAc > 1:2113032/1‑62 (MQ=255) tCGGTGAAGGCAATATCGGTCATGATGCGTTCCGCTGGATCATGCAAGACGACCGTTTCGACg > 1:1602330/1‑63 (MQ=255) tCGGTGAAGGCAATATCGGTCATGATGCGTTCCGCTGGATCATGCAAGACGACCGTTTCGACGGCATTCCg > 1:389904/1‑71 (MQ=255) tCGGTGAAGGCAATATCGGTCATGATGCGTTCCGCTGGATCATGCAAGACGACCGTTTCGACGGCATTCCg > 1:297626/1‑71 (MQ=255) tCGGTGAAGGCAATATCGGTCATGATGCGTTCCGCTGGATCATGCAAGACGACCGTTTCGACGGCATTCCg > 1:605427/1‑71 (MQ=255) tCGGTGAAGGCAATATCGGTCATGATGCGTTCCGCTGGATCATGCAAGACGACCGTTTCGACGGCATTCCg > 1:856022/1‑71 (MQ=255) ggTGAAGGCAATATCGGTCATGATGCGTTCCGCTGGATCATGCAAGACGACCGTTTCGACGGCAtt > 1:2971645/1‑66 (MQ=255) ggTGAAGGCAATATCGGTCATGATGCGTTCCGCTGGATCATGCAAGACGACCGTTTCGACGGCATTCCg < 1:801347/69‑1 (MQ=255) ggTGAAGGCAATATCGGTCATGATGCGTTCCGCTGGATCATGCAAGACGACCGTTTCGACGGCATTCCGCt < 1:1493583/71‑1 (MQ=255) gTGAAGGCAATATCGGTCATGATGCGTTCCGCTGGATCATGCAAGACGACCGTTTCGACGGCATTCCGCt < 1:1115071/70‑1 (MQ=255) gTGAAGGCAATATCGGTCATGATGCGTTCCGCTGGATCATGCAAGACGACCGTTTCGACGGCATTCCGCTg < 1:3409718/71‑1 (MQ=255) gTGAAGG‑AATATCGGTCATGATGCGTTCCGCTGGATCATGCAAGACGACCGTTTCg < 1:2284072/56‑1 (MQ=255) tGAAGGCAATATCGGTCATGATGCGTTCCGCTGGATCATGCAAGACGACCGTTTCGACGGCATTCCGCTGa < 1:1215368/71‑1 (MQ=255) gAAGGCAATATCGGTCATGATGCGTTCCGCTGGATCATGCAAGACGACCGTTTCg < 1:3547037/55‑1 (MQ=255) aGGCAATATCGGTCATGATGCGTTCCGCTGGATCATGCAAGACGACCGTTTCGACGGCATTCCGCTGATcc < 1:2660079/71‑1 (MQ=255) aGGCAATATCGGTCATGATGCGTTCCGCTGGATCATGCAAGACGACCGTTTCGACGGCATTCCGCTGATca < 1:293695/71‑2 (MQ=255) ggCAATATCGGTCATGATGCGTTCCGCTGGATCATGCAGGACGACCGTTTCGACGGCATTCCGCTGATCCt < 1:142821/71‑1 (MQ=255) ggCAATATCGGTCATGATGCGTTCCGCTGGATCATGCAAGACGACCGtt > 1:1613684/1‑49 (MQ=255) ggCAATATCGGTCATGATGCGTTCCGCTGGATCATGCAAGACGACCGTTTCGACGGCa > 1:1629714/1‑58 (MQ=255) gCAATATCGGTCATGATGCGTTCCGCTGGATCATGCAAGACGACCGTTTCGACGGCATTCCGCTGATCCTc < 1:703883/71‑1 (MQ=255) cAATATCGGTCATGATGCGTTCCGCTGGATCATGCAGGACGACCGTTTCGACGGCATTCCGCTGATCCTc > 1:2016046/1‑70 (MQ=255) aaTATCGGTCATGATGCGTTCCGCTGGATCATGCAAGACGACCGTTTCGACGGCATTCCGCTGATCCTCGa < 1:1017209/71‑1 (MQ=255) tatCGGTCATGATGCGTTCCGCTGGATCATGCAGGACGACCGTTTCGACGGCAt < 1:906043/54‑1 (MQ=255) tatCGGTCATGATGCGTTCCGCTGGATCATGCAAGACGACCGt < 1:3703413/43‑1 (MQ=255) atCGGTCATGATGCGTTCCGCTGGATCATGCAGGACGACCGTTTCGACGGCATTCCGCTGATCCTCGAAAc > 1:2419125/1‑71 (MQ=255) atCGGTCATGATGCGTTCCGCTGGATCATGCAAGACGACCGTTTCGACGGCATTCCGCTGATCCTc > 1:2534242/1‑66 (MQ=255) tCGGTCATGATGCGTTCCGCTGGATCATGCAAGACGACCGTTTCGACGGCATTCCGCTGATCCTCGAAAcc < 1:2673935/71‑1 (MQ=255) cGGTCATGATGCGTTCCGCTGGATCATGCAAGACGACCGTTTCGACGGCATTCCGCTGATCCTCGAAAcc < 1:1336291/70‑1 (MQ=255) ggTCATGATGCGTTCCGCTGGATCATGCAAGACGACCGTTTCGACGGCATTCCGCTGATCCTCGAAACCAt < 1:1770976/71‑1 (MQ=255) gTCATGATGCGTTCCGCTGGATCATGCAAGACGACCGTTTCGa > 1:1161223/1‑43 (MQ=255) gTCATGATGCGTTCCGCTGGATCATGCAAGACGACCGTTTCGACGGCATTCCGCTGATCCTCGAAAc > 1:1374109/1‑67 (MQ=255) tCATGATGCGTTCCGCTGGATCATGCAAGACGACCGTTTCGACGGCATTCCGCTGa > 1:1746374/1‑56 (MQ=255) tCATGATGCGTTCCGCTGGATCATGCAAGACGACCGTTTCGACGGCATTCCGCTGATCCTCGAAACCATCa < 1:2525183/71‑1 (MQ=255) cATGATGCGTTCCGCTGGATCATGCAAGACGACCGTTTCGACGGCATTCCg > 1:3210654/1‑51 (MQ=255) atgCGTTCCGCTGGATCATGCAAGACGACCGTTTCGACGGCATTCCGCTGATCCTCGAAACCATCAACCCg < 1:2934682/71‑1 (MQ=255) tgCGTTCCGCTGGATCATGCAAGACGACCGTTTCGACGGCATTCCGCTGATCCTCGAAACCATCAACCCgg < 1:397683/71‑1 (MQ=255) tgCGTTCCGCTGGATCATGCAAGACGACCGTTTCGACGGCATTCCGCTGATCCTCGAAACCATCAACCCgg < 1:937381/71‑1 (MQ=255) cGTTCCGCTGGATCATGCAAGACGACCGTTTCGACGGCATTCCGCTGATCCTCGAAACCATCAACCCGGa > 1:1410493/1‑70 (MQ=255) ttCCGCTGGATCATGCAGGACGACCGTTTCGACGGCATTCCGCTGATCCTCGAAACCATCAACCCgg < 1:767221/67‑1 (MQ=255) ttCCGCTGGATCATGCAAGACGACCGTTTCGACGGCATTCCGCTGATCCTCGAAACCATCAACCCGGatat < 1:715274/71‑1 (MQ=255) ccGCTGGATCATGCAAGACGACCGTTTCGACGGCATTCCGc > 1:85562/1‑41 (MQ=255) ccGCTGGATCATGCAAGACGACCGTTTCGACGGCATTCCGc > 1:35051/1‑41 (MQ=255) ccGCTGGATCATGCAAGACGACCGTTTCGACGGCATTCCGc > 1:775101/1‑41 (MQ=255) ccGCTGGATCATGCAAGACGACCGTTTCGACGGCATTCCGc > 1:1523469/1‑41 (MQ=255) ccGCTGGATCATGCAAGACGACCGTTTCGACGGCATTCCGc > 1:1307764/1‑41 (MQ=255) ccGCTGGATCATGCAAGACGACCGTTTCGACGGCATTCCGCTGATCCTCGAAACCATCAACCCGGa > 1:2424908/1‑66 (MQ=255) ccGCTGGATCATGCAAGACGACCGTTTCGACGGCATTCCGCTGATCCTCGAAACCATCAACCCGGATATc < 1:2777701/70‑1 (MQ=255) cGCTGGATCATGCAAGACGACCGTTTCGACGGCATTCCGCTGATCCTCGAAACCATCAACCCGGATATCt < 1:3243179/70‑1 (MQ=255) cGCTGGATCATGCAAGACGACCGTTTCGACGGCATTCCGCTGATCCTCGAAACCATCAACCCGGATATCt < 1:772573/70‑1 (MQ=255) cGCTGGATCATGCAAGACGACCGTTTCGACGGCATTCCGCTGATCCTCGAAACCATCAACCCGGATATCt < 1:1733489/70‑1 (MQ=255) cGCTGGATCATGCAAGACGACCGTTTCGACGGCATTCCGCTGATCCTCGAAACCATCAACCCGGATATCt < 1:839473/70‑1 (MQ=255) cGCTGGATCATGCAAGACGACCGTTTCGACGGCATTCCGCTGATCCTCGAAACCATCAACCCGGATATCTg > 1:1444903/1‑71 (MQ=255) cGCTGGATCATGCAAGACGACCGTTTCGACGGCATTCCGCTGATCCTCGAAACCATCAACCCGGATATCTg > 1:258848/1‑71 (MQ=255) gCTGGATCATGCAAGACGACCGTTTCGACGGCATTCCGCTGATCCTCGAAACCATCa < 1:2498410/57‑1 (MQ=255) ggATCATGCAAGACGACCGTTTCGACGGCATTCCGCTGATCCTCGAAACCATCAACCCGGATATCTggg > 1:602820/1‑69 (MQ=255) gATCATGCAAGACGACCGTTTCGACGGCATTCCGCTGATCCTCGAAACCATCAACCCGGATATCTggg > 1:1676911/1‑68 (MQ=255) tCATGCAAGACGACCGTTTCGACGGCATTCCGCTGATCCTCGAAACCATCAACCCGGATATCTGGGCagaa < 1:3368714/71‑1 (MQ=255) tCATGCAAGACGACCGTTTCGACGGCATTCCGCTGATCCTCGAAACCATCAACCCGGATATCTGGGCag > 1:1860340/1‑69 (MQ=255) tCATGCAAGACGACCGTTTCGACGGCATTCCGCTGATCCTCGAAACCATCAACCCGGATATCTGGGCag > 1:3043975/1‑69 (MQ=255) tCATGCAAGACGACCGTTTCGACGGCATTCCGCTGATCCTCGAAACCATCAACCCGGATATCTCGGCag > 1:800313/1‑69 (MQ=255) gCAAGACGACCGTTTCGACGGCATTCCGCTGATCCTCGAAACCATc > 1:1383369/1‑46 (MQ=255) gCAAGACGACCGTTTCGACGGCATTCCGCTGATCCTCGAAACCATCAACCCGGATATCTGGGCagaa > 1:1047062/1‑67 (MQ=255) cAAGACGACCGTTTCGACGGCATTCCGCTGATCCTCGAAACCATCAACCCGGATATCTGGGCAGAAgaga < 1:52554/70‑1 (MQ=255) cAAGACGACCGTTTCGACGGCATTC‑‑CTGATCCTCGAAACCATCAACCCGGATATCTGGGCAGAAGAGATc < 1:1048384/70‑1 (MQ=255) aGACGACCGTTTCGACGGCATTCCGCTGATCCTCGaa < 1:165957/37‑1 (MQ=255) aGACGACCGTTTCGACGGCATTCCGCTGATCCTCGaa < 1:1111864/37‑1 (MQ=255) | GCCGCGTTGACCGCCATCATAGCCTCGGTGAAGGCAATATCGGTCATGATGCGTTCCGCTGGATCATGCAAGACGACCGTTTCGACGGCATTCCGCTGATCCTCGAAACCATCAACCCGGATATCTGGGCAGAAGAGATC > minE/1390545‑1390684 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |