| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 1,434,773 | T→C | 48.7% | A465A (GCA→GCG) | yojI ← | fused predicted multidrug transport subunits and membrane component and ATP‑binding component of ABC superfamily |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 1,434,773 | 0 | T | C | 48.7% | ‑2.3 / 54.3 | 39 | A465A (GCA→GCG) | yojI | fused predicted multidrug transport subunits and membrane component and ATP‑binding component of ABC superfamily |
| Reads supporting (aligned to +/- strand): ref base T (11/9); new base C (9/10); total (20/19) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.52e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
AAAACTCACGACGGAAGTGTGGATCCTGATCCGCCGCCCATTCATCCAGCAGGATAATATCGCGTTCTTCTGCCAGCGCCAGCAACAGCGCCACGCGTTTTTTCTGCCCTTTTGATAACTTCAGGTTAACAATACGCCCG > minE/1434703‑1434842 | aaaaCTCACGACGGAAGTGTGGATCCTGATCCGCCGCCCATTCATCCAGCAGGATAATATCGCGTtcttct > 1:2341957/1‑71 (MQ=255)aaaaCTCACGACGGAAGTGTGGATCCTGATCCGCCGCCCATTCATCCAGCAGGATAATATCGCGTtcttct > 1:1855574/1‑71 (MQ=255) aCTCACGACGGAAGTGTGGATCCTGATCCGCCGCCCATTCATCCAGCAGGATAATATCGCGTTCTTCTgcc < 1:3063575/71‑1 (MQ=255) acgacgGAAGTGTGGATCCTGATCCGCCGCCCATTCATCCAGCAGGATAATATCGCGTTCTTCCgccagcg > 1:592247/1‑71 (MQ=255) cgacgGAAGTGTGGATCCTGATCCGCCGCCCATTCATCCAGCAGGATAATATCGCGTTCTTCTgccagcgc < 1:1473491/71‑1 (MQ=255) acgGAAGTGTGGATCCTGATCCGCCGCCCATTCATCCAGCAGGATAATATCGCGTTCTTCTgccagcgc > 1:626413/1‑69 (MQ=255) acgGAAGTGTGGATCCTGATCCGCCGCCCATTCATCCAGCAGGATAATATCGCGTTCTTCCgccagcgcca < 1:3278529/71‑1 (MQ=255) cgGAAGTGTGGATCCTGATCCGCCGCCCATTCATCCAGCAGGATAATATCGCGTTCTTCcgccagcgccag > 1:1926044/1‑71 (MQ=255) gtgtGGATCCTGATCCGCCGCCCATTCATCCAGCAGGATAATATCGCGTTCTTCCGCCAGCGCCAGCaa > 1:2388169/1‑69 (MQ=255) gtgtGGATCCTGATCCGCCGCCCATTCATCCAGCAGGATAATATCGCGTTCTTCCGCCAGCGCCAGCAACa < 1:78968/71‑1 (MQ=255) tgGATCCTGATCCGCCGCCCATTCATCCAGCAGGATAATATCGCGTTCTTCTGCCAGCGCCAGCAACAgcg > 1:3684295/1‑71 (MQ=255) tgGATCCTGATCCGCCGCCCATTCATCCAGCAGGATAATATCGCGTTCTTCTGCCAGCGCCAGCAACAgc < 1:1201628/70‑1 (MQ=255) ccTGATCCGCCGCCCATTCATCCAGCAGGATAATATCGCGTTCTTCCGCCAGCGCCAGCAACAGCGCCAc > 1:1883338/1‑70 (MQ=255) tCCGCCGCCCATTCATCCAGCAGGATAATATCGCGTTCTTCTgccagcgccagc < 1:3350898/54‑1 (MQ=255) tCCGCCGCCCATTCATCCAGCAGGATAATATCGCGTTCTTCTGCCAGCGCCAGCAACAGCGCCACGCGt > 1:36391/1‑69 (MQ=255) tCCGCCGCCCATTCATCCAGCAGGATAATATCGCGTTCTTCTGCCAGCGCCAGCAACAGCGCCACGCGt > 1:1396900/1‑69 (MQ=255) tCCGCCGCCCATTCATCCAGCAGGATAATATCGCGTTCTTCCGCCAGCGCCAGCAACAGCGCCACGCGttt < 1:41755/71‑1 (MQ=255) gccgccCATTCATCCAGCAGGATAATATCGCGTTCTTCCGCCAGCGCCAGCAACAGCGCCACGCGtttttt < 1:3125488/71‑1 (MQ=255) ccgccCATTCATCCAGCAGGATAATATCGCGTTCTTCTGCCAGCGCCAGCAACAGCGCCACGCGTTTTTTc < 1:3709886/71‑1 (MQ=255) cgccCATTCATCCAGCAGGATAATATCGCGTTCTTCCGCCAGCGCCAGCAACAGCGCCACGCGTTTTTTCt > 1:1429297/1‑71 (MQ=255) aTTCATCCAGCAGGATAATATCGCGTTCTTCTGCCAGCGCCAGCAACAGCGCCACGCGTTTTTTCTGCCCt > 1:709712/1‑71 (MQ=255) aTTCATCCAGCAGGATAATATCGCGTTCTTCCGCCAGCGCCAGCAACAGCGCCACGCGTTTTTTCTGCCCt < 1:556907/71‑1 (MQ=255) aTTCATCCAGCAGGATAATATCGCGTTCTTCCGCCAGCGCCAGCAACAGCGCCACGCGTTTTTTCTGCCCt < 1:1458767/71‑1 (MQ=255) ttCATCCAGCAGGATAATATCGCGTTCTTCTGCCAGCGCCAGCAACAGCGCCACGCGTTTTTTCTGCCCtt < 1:1759443/71‑1 (MQ=255) cATCCAGCAGGATAATATCGCGTTCTTCTGCCAGCGCCAGCAACAGCGCCACGCGTTTTTTCTGCCCtttt > 1:3021820/1‑71 (MQ=255) cATCCAGCAGGATAATATCGCGTTCTTCCGCCAGCGCCAGCAACAGCGCCACGCGTTTTTTCTGCCCtttt > 1:3518989/1‑71 (MQ=255) cATCCAGCAGGATAATATCGCGTTCTTCCGCCAGCGCCAGCAACAGCGCCACGCGTTTTTTCTGCCCtttt > 1:1307678/1‑71 (MQ=255) agcagGATAATATCGCGTTCTTCTGCCAGCGCCAGCAACAGCGCCACGCGTTTTTTCTGCCCTTTTg > 1:781621/1‑67 (MQ=255) agcagGATAATATCGCGTTCTTCTGCCAGCGCCAGCAACAGCGCCACGCGTTTTTTCTGCCCTTTTGATaa > 1:1256479/1‑71 (MQ=255) agGATAATATCGCGTTCTTCCGCCAGCGCCAGCAACAGCGCCACGCGTTTTTTCTGCCCTTTTGATaa > 1:3366865/1‑68 (MQ=255) ggATAATATCGCGTTCTTCTGCCAGCGCCAGCAACAGCGCCACGCGTTTTTTCTGCCCttt < 1:2712021/61‑1 (MQ=255) gATAATATCGCGTTCTTCTGCCAGCGCCAGCAACAGCGCCACGCGTTTTTTCTGCCCTTTTGATAACtt < 1:1426877/69‑1 (MQ=255) gATAATATCGCGTTCTTCCGCCAGCGCCAGCAACAGCGCCACGCGTTTTTTCTGCCCTTTTGATAACTTCa < 1:2882187/71‑1 (MQ=255) taataTCGCGTTCTTCTGCCAGCGCCAGCAACAGCGCCACGCGTTTTTTCTGCCCTTTTGATAACTTCAgg > 1:2932208/1‑71 (MQ=255) taataTCGCGTTCTTCTGCCAGCGCCAGCAACAGCGCCACGCGTTTTTTCTGCCCTTTTGATAACTTCAgg > 1:2179624/1‑71 (MQ=255) taataTCGCGTTCTTCCGCCAGCGCCAGCAACAGCGCCACGCGTTTTTTCTGCCCTTTTGATAACTTCacg > 1:124341/1‑69 (MQ=255) aataTCGCGTTCTTCCGCCAGCGCCAGCAACAGCGCCACGCGTTTTTTCTGCCCtttt < 1:1750003/58‑1 (MQ=255) atatCGCGTTCTTCCGCCAGCGCCAGCAACAGCGCCACGCGTTTTTTCTGCCCTTTTGATAACTTCAGGtt < 1:3013724/71‑1 (MQ=255) tatCGCGTTCTTCTGCCAGCGCCAGCAACAGCGCCACGCGTTTTTTCTGCCCTTTTGATAACTTCAGGTTa < 1:276406/71‑1 (MQ=255) tatCGCGTTCTTCCGCCAGCGCCAGCAACAGCGCCACGCGTTTTTTCTGCCCTTTTGATAACTTCAGGTTa < 1:1306978/71‑1 (MQ=255) gcgTTCTTCTGCCAGCGCCAGCAACAGCGCCACGCGTTTTTTCTGCCCTTTTGATAACTTCAGGTTAACaa > 1:867669/1‑71 (MQ=255) ttcttcCGCCAGCGCCAGCAACAGCGCCACGCGTTTTTTCt > 1:2979089/1‑41 (MQ=255) tcttccGCCAGCGCCAGCAACAGCGCCACGCGTTTTTTCTGCCCTTTTGATAACTTCAGGTTAACAATACg > 1:201973/1‑71 (MQ=255) cttccGCCAGCGCCAGCAACAGCGCCACGCGTTTTTTCTGCCCTTTTGATAACTTCAGGTTAACAATACGc > 1:929458/1‑71 (MQ=255) ttctGCCAGCGCCAGCAACAGCGCCACGCGTTTTTTCTGCCCTTTTGATAACTTCAGGTTa < 1:406964/61‑1 (MQ=255) ttccGCCAGCGCCAGCAACAGCGCCACGCGTTTTTTCTGCCCTTTTGATAACTTCAGGTTAAc < 1:2239760/63‑1 (MQ=255) tctGCCAGCGCCAGCAACAGCGCCACGCGTTTTTTCTGCCCTTTTGATAACTTCAGGTTAACAATACGc < 1:1961052/69‑1 (MQ=255) ctGCCAGCGCCAGCAACAGCGCCACGCGTTTTTTCTGCCCTTTTGATAACTTCAGGTTAACAATACGCCCg > 1:1637396/1‑71 (MQ=255) | AAAACTCACGACGGAAGTGTGGATCCTGATCCGCCGCCCATTCATCCAGCAGGATAATATCGCGTTCTTCTGCCAGCGCCAGCAACAGCGCCACGCGTTTTTTCTGCCCTTTTGATAACTTCAGGTTAACAATACGCCCG > minE/1434703‑1434842 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |