| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,597,527 | T→A | 10.5% | intergenic (‑523/+354) | arsR ← / ← gor | DNA‑binding transcriptional regulator/glutathione oxidoreductase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,597,527 | 0 | T | A | 10.5% | 298.7 / 22.4 | 105 | intergenic (‑523/+354) | arsR/gor | DNA‑binding transcriptional regulator/glutathione oxidoreductase |
| Reads supporting (aligned to +/- strand): ref base T (48/46); new base A (6/5); total (54/51) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 113 total aligned reads displayed.
AGCCATCATCTAACGCATCAATGCTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTATCCAGTTAGCTCTGAGGCATTTTCACTCTGGCAATGCGCATAAACGCTTTC > minE/2597457‑2597596 | aGCCATCATCTAACGCATCAATGCTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCt > 1:400622/1‑71 (MQ=255) gCCATCATCTAACGCATCAATGCTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCt < 1:271625/70‑1 (MQ=255) tcatcTAACGCATCAATGCTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATg < 1:3347005/71‑1 (MQ=255) tcatcTAACGCATCAATGCTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATg < 1:1706700/71‑1 (MQ=255) atcTAACGCATCAATGCTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTa < 1:1046118/71‑1 (MQ=255) cTAACGCATCAATGCTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCAt > 1:2860795/1‑66 (MQ=255) tAACGCATCAATGCTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTg > 1:3069029/1‑71 (MQ=255) aCGCATCAATGCTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTg < 1:1412522/69‑1 (MQ=255) cGCATCAATGCTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTAt > 1:3603340/1‑71 (MQ=255) cGCATCAATGCTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTAt > 1:1354968/1‑71 (MQ=255) cGCATCAATGCTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTAt < 1:2283179/71‑1 (MQ=255) gCATCAATGCTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTa > 1:2487918/1‑69 (MQ=255) cAATGCTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTa > 1:2179839/1‑71 (MQ=255) cAATGCTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTa > 1:3053106/1‑71 (MQ=255) aaTGCTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTa < 1:3498069/70‑1 (MQ=255) aaTGCTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTa < 1:1106185/70‑1 (MQ=255) aTGCTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCt < 1:234458/51‑1 (MQ=255) aTGCTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCt < 1:832957/51‑1 (MQ=255) aTGCTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCt < 1:3193301/51‑1 (MQ=255) aTGCTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCt < 1:1743896/51‑1 (MQ=255) aTGCTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCt < 1:3395345/51‑1 (MQ=255) aTGCTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTATc < 1:1094330/71‑1 (MQ=255) tGCTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCa > 1:3453262/1‑53 (MQ=255) tGCTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTAt > 1:204211/1‑69 (MQ=255) tAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTATCCAGt > 1:1211607/1‑71 (MQ=255) aaTACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTATCCAGt > 1:553935/1‑70 (MQ=255) aTACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGa > 1:1665568/1‑60 (MQ=255) aTACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGa > 1:1554702/1‑60 (MQ=255) aTACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTATCCAg > 1:774673/1‑68 (MQ=255) aTACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTATCCAGtt < 1:3347621/70‑1 (MQ=255) aTACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTATCCAGt > 1:3600606/1‑69 (MQ=255) aTACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTATCCAGt > 1:3223519/1‑69 (MQ=255) aTACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTATCCAGt > 1:3196750/1‑69 (MQ=255) aTACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTATCCAGTTa < 1:791380/71‑1 (MQ=255) tACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTATCCAGTTAg < 1:3017796/71‑1 (MQ=255) aCCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGt > 1:3063566/1‑54 (MQ=255) aCCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGt > 1:2021301/1‑54 (MQ=255) cATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTATCCAGTTAGctc < 1:641844/71‑1 (MQ=255) aTACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTATCCAGTTAGctct < 1:808780/71‑1 (MQ=255) aTACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTATCCAGTTAGctct < 1:2596128/71‑1 (MQ=255) aTACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTATCCAGTTAGctct > 1:516266/1‑71 (MQ=255) aTACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTATCCAGTTAGctct < 1:1748427/71‑1 (MQ=255) tACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTATCCAGTTAGctct > 1:1699891/1‑70 (MQ=255) tACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTATCCAGTTAGctct > 1:611462/1‑70 (MQ=255) tACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTATCCAGTTAGctct > 1:110745/1‑70 (MQ=255) tACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTATCCAGTTAGctct > 1:3515820/1‑70 (MQ=255) tACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTATCCAGTTAGctc > 1:827149/1‑69 (MQ=255) tACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTATCCAGTTAGCTCTg < 1:1896531/71‑1 (MQ=255) aCTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGc < 1:615820/40‑1 (MQ=255) aCTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGc < 1:2509656/40‑1 (MQ=255) cTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGc < 1:2748524/39‑1 (MQ=255) cTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACt < 1:2831176/46‑1 (MQ=255) cTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACt < 1:762892/46‑1 (MQ=255) cTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTATCCAGTTAGct > 1:3183120/1‑66 (MQ=255) tGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCAt > 1:2080459/1‑40 (MQ=255) tGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCAt > 1:3371760/1‑40 (MQ=255) gAAACTATTGCAAGGACGTGCTGGTTTTATAACCTg > 1:1863051/1‑36 (MQ=255) gAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTATCCAGTTAGCTCTGAgg > 1:106203/1‑70 (MQ=255) aaaCTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTATCCAGTTAGCTCTGAGGc < 1:3189504/70‑1 (MQ=255) tATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATg > 1:2565124/1‑44 (MQ=255) ttGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATg < 1:2401840/42‑1 (MQ=255) ttGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATg < 1:2406202/42‑1 (MQ=255) ttGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTATCCAGTTAGCTCTGAGGCAtttt < 1:801549/69‑1 (MQ=255) tGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGa < 1:873837/42‑1 (MQ=255) gCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTATCCAGTTAGctct < 1:706716/57‑1 (MQ=255) gCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTATCCAGTTAGCTCTGAGGCATTTTCAct > 1:3529837/1‑71 (MQ=255) aaGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTATCCAGTTAGCTCTg < 1:867750/56‑1 (MQ=255) aaGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTATCCAGTTAGCTCTg < 1:2181717/56‑1 (MQ=255) aaGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTATCCAGTTAGCTCTGAGGCATTTTCActct < 1:2789489/71‑1 (MQ=255) aaGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTATCCAGTTAGCTCTGAGGCATTTTCActct < 1:1275403/71‑1 (MQ=255) aaGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTATCCAGTTAGCTCTGAGGCATTTTCActct < 1:298291/71‑1 (MQ=255) aaGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTATCCAGTTAGCTCTGAGGCATTTTCActct < 1:1356944/71‑1 (MQ=255) aaGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTATCCAGTTAGCTCTGAGGCATTTTCActct < 1:1662676/71‑1 (MQ=255) aaGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTATCCAGTTAGCTCTGAGGCATTTTCActct < 1:1715039/71‑1 (MQ=255) aGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTATCCAGTTAGCTCTGAGGCATTTTCACTCTg > 1:719788/1‑71 (MQ=255) aGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTATCCAGTTAGCTCTGAGGCATTTTCACTCTg > 1:697735/1‑71 (MQ=255) ggACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTATCCAGTTAGCTCTGAGGc > 1:2143394/1‑58 (MQ=255) aCGTGCTGGTTTTATAACCTGCATGTACTGTATGATTATCCAGTTAGCTCTGAGGCATTTTCACTCTGGCa < 1:974962/71‑1 (MQ=255) tGCAGGTTATAAAACCAGCATGTACTGTATGATTATCCAGTTAGCTCTg < 1:1837684/49‑1 (MQ=25) tGCAGGTTATAAAACCAGCATGTACTGTATGATTATCCAGTTAGCTCTg < 1:278000/49‑1 (MQ=25) tGCAGGTTATAAAACCAGCATGTACTGTATGATTATCCAGTTAGCTCTg < 1:754523/49‑1 (MQ=25) tGCAGGTTATAAAACCAGCATGTACTGTATGATTATCCAGTTAGCTCTg < 1:1528762/49‑1 (MQ=25) gcaggTTATAAAACCAGCATGTACTGTATGATTATCCAGTTAGCTCTGAGGCATTTTCACTCTGGCAATgc > 1:179605/4‑71 (MQ=255) gcaggTTATAAAACCAGCATGTACTGTATGATTATCCAGTTAGCTCTGAGGCATTTTCACTCTGGCAATgc > 1:1773080/4‑71 (MQ=255) gcaggTTATAAAACCAGCATGTACTGTATGATTATCCAGTTAGCTCTGAGGCATTTTCACTCTGGCAATgc > 1:3559915/4‑71 (MQ=255) gcaggTTATAAAACCAGCATGTACTGTATGATTATCCAGTTAGCTCTGAGGCATTTTAACTCTGGCAATgc > 1:3026147/4‑71 (MQ=255) caggTTATAAAACCAGCATGTACTGTATGATTATCCAGTTAGCTCTGAg > 1:86314/3‑49 (MQ=25) tGGTTTTATAACCTGCATGTACTGTATGATTATCCAGTTAGCTCTGAGGCATTTTCACTCTGGCAATgcg > 1:3448464/1‑70 (MQ=255) ggTTTTATAACCTGCATGTACTGTATGATTATCCAGTTAGCTCTGAGGCATTTTCACTCTGGCAATGCGCa > 1:190786/1‑71 (MQ=255) ggTTATAAAACCAGCACGTACTGTATGATTATCCAGTTAGctct > 1:1486738/1‑44 (MQ=21) gTTTTATAACCTGCATGTACTGTATGATTATCCAGTTAGCTCTGAGGCATTTTCACTCTGGCAATGCGCAt < 1:1989709/71‑1 (MQ=255) ttATAACCTGCATGTACTGTATGATTATCCAGTTAGCTCTGAGGCATTTTCACTCTGGCAATGCGCATaa < 1:2193967/70‑1 (MQ=255) tataACCTGCATGTACTGTATGATTATCCAGTTAGCTCTGAGGCATTTTCACTCTGGCAATGCGCATaaa < 1:1899578/70‑1 (MQ=255) ataACCTGCATGTACTGTATGATTATCCAGTTAGCTCTGAGGCATTTTCa > 1:2223662/1‑50 (MQ=255) aCCTGCATGTACTGTATGATTATCCAGTTAGCTCTGAGGCATTTTCACTCTGGCAATgc < 1:757086/59‑1 (MQ=255) aCCTGCATGTACTGTATGATTATCCAGTTAGCTCTGAGGCATTTTCACTCTGGCAATGCGCATAAACGCtt < 1:809115/71‑1 (MQ=255) ccTGCATGTACTGTATGATTATCCAGTTAGCTCTGAGGCATTTTCActct < 1:170331/50‑1 (MQ=255) ccTGCATGTACTGTATGATTATCCAGTTAGCTCTGAGGCATTTTCACTCTGGCAATgcgc < 1:923052/60‑1 (MQ=255) ccTGCATGTACTGTATGATTATCCAGTTAGCTCTGAGGCATTTTCACTCTGGCAATGCGCATAAACGCttt < 1:206333/71‑1 (MQ=255) cTGCATGTACTGTATGATTATCCAGTTAGCTCTGAGGCATTTTCACTCTGGCAATGCGCATAAACGCTTTc < 1:1094309/71‑1 (MQ=255) | AGCCATCATCTAACGCATCAATGCTAATACCATACTGAAACTATTGCAAGGACGTGCTGGTTTTATAACCTGCATGTACTGTATGATTATCCAGTTAGCTCTGAGGCATTTTCACTCTGGCAATGCGCATAAACGCTTTC > minE/2597457‑2597596 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |