| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 2,811,028 | G→A | 54.9% | A573V (GCA→GTA) | uvrA ← | ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 2,811,028 | 0 | G | A | 54.9% | 18.7 / 94.6 | 71 | A573V (GCA→GTA) | uvrA | ATPase and DNA damage recognition protein of nucleotide excision repair excinuclease UvrABC |
| Reads supporting (aligned to +/- strand): ref base G (25/7); new base A (27/12); total (52/19) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.33e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.77e-01 | |||||||||||
TGCCGCTCATGTACTGCCCGGTCAACGACTCCGGCACCGCCATAATCGCTTCCAGCGGACCTTCTGCGACCACTTCACCGCCGTGAACACCTGCGCCCGGGCCAATGTCGATCACATGGTCAGCGGC > minE/2810963‑2811089 | tGCCGCTCATGTACTGCCCGGTCAACGACTCCGGCACCGCCATAATCGCTTCCAGCGGACCTTCTACGAc < 1:1840529/70‑1 (MQ=255) cGCTCATGTACTGCCCGGTCAACGACTCCGGCACCGCCATAATCGCTTCCAGCGGACCTTCTGCGACCAc < 1:1049163/70‑1 (MQ=255) tCATGTACTGCCCGGTCAACGACTCCGGCACCGCCATAATCGCTTCCAGCGGACCTTCTGCGACCACTTCa > 1:1105284/1‑71 (MQ=255) tCATGTACTGCCCGGTCAACGACTCCGGCACCGCCATAATCGCTTCCAGCGGACCTTCTACGACCACTTCa > 1:3482445/1‑71 (MQ=255) aTGTACTGCCCGGTCAACGACTCCGGCACCGCCATAATCGCTTCCAGCGGACCTTCTACGACCACTTCAcc > 1:2684273/1‑71 (MQ=255) tGTACTGCCCGGTCAACGACTCCGGCACCGCCATAATCGCTTCCAGCGGACCTTCTGCGACCACTTCAccg < 1:2909782/71‑1 (MQ=255) tGTACTGCCCGGTCAACGACTCCGGCACCGCCATAATCGCTTCCAGCGGACCTTCTACGAcc < 1:225661/62‑1 (MQ=255) tACTGCCCGGTCAACGACTCCGGCACCGCCATAATCGCTTCCAGCGGACCTTCTGc > 1:2651324/1‑56 (MQ=255) tACTGCCCGGTCAACGACTCCGGCACCGCCATAATCGCTTCCAGCGGACCTTCTGCGACCACTTCAccgcc < 1:3296725/71‑1 (MQ=255) tACTGCCCGGTCAACGACTCCGGCACCGCCATAATCGCTTCCAGCGGACCTTCTGCGACCACTTCAccgcc < 1:511513/71‑1 (MQ=255) aCTGCCCGGTCAACGACTCCGGCACCGCCATAATCGCTTCCAGCGGACCTTCTGCGACCACTTCAccgcc < 1:783463/70‑1 (MQ=255) cTGCCCGGGCAACGACTCCGGCACCGCCATAATCGCTTCCAGCGGACCTTCTACGACCACTTCAccgccg < 1:1714828/70‑1 (MQ=255) cccGGTCAACGACTCCGGCACCGCCATAATCGCTTCCAGCGGACCTTCTGCGACCACTTCACCGCCGTGaa > 1:3091605/1‑71 (MQ=255) ccGGTCAACGACTCCGGCACCGCCATAATCGCTTCCAGCGGACCTTCTACGACCACTTCACCGCCGTGaa > 1:408434/1‑70 (MQ=255) ggTCAACGACTCCGGCACCGCCATAATCGCTTCCAGCGGACCTTCTGCGACCACTTCACCGCCGTGAacac < 1:167422/71‑1 (MQ=255) ggTCAACGACTCCGGCACCGCCATAATCGCTTCCAGCGGACCTTCTACGACCACTTCACCGCCGTGAacac < 1:1477054/71‑1 (MQ=255) tCAACGACTCCGGCACCGCCATAATCGCTTCCAGCGGACCTTCTGCGACCACTTCACCGCCGTGAACACCt > 1:488330/1‑71 (MQ=255) tCAACGACTCCGGCACCGCCATAATCGCTTCCAGCGGACCTTCTACGACCACTTCACCGCCGTGAACACCt < 1:1095384/71‑1 (MQ=255) cAACGACTCCGGCACCGCCATAATCGCTTCCAGCGGACCTTCTGCGACCACtt > 1:1940305/1‑53 (MQ=255) cAACGACTCCGGCACCGCCATAATCGCTTCCAGCGGACCTTCTGCGACCACtt > 1:2488173/1‑53 (MQ=255) cAACGACTCCGGCACCGCCATAATCGCTTCCAGCGGACCTTCTGCGACCACTTCACCGCCGTGAACACCTg > 1:2098093/1‑71 (MQ=255) aaaCGACTCCGGCACCGCCATAATCGCTTCCAGCGGACCTTCTACGACCACTTCACCGCCGTGAACAcc > 1:852358/2‑69 (MQ=255) aaCGACTCCGGCACCGCCATAATCGCTTCCAGCGGACCTTCTGCGACCACTTCACCGCCGTGAACACCTgc > 1:1061951/1‑71 (MQ=255) aCGACTCCGGCACCGCCATAATCGCTTCCAGCGGACCTTCTACGACCACTTCACCGCCGTGAACACCTgcg > 1:205210/1‑71 (MQ=255) aCGACTCCGGCACCGCCATAATCGCTTCAAGCGGACCTTCTACGACCACTTCACCGCCGTGAACACCTgcg > 1:3496016/1‑71 (MQ=255) cGACTCCGGCACCGCCATAATCGCTTACAGCGGACCTTCTACGACCACTTCACCGCCGTGAACACCTgcg < 1:2119332/70‑1 (MQ=255) gACTCCGGCACCGCCATAATCGCTTCCAGCGGACCTTCTGCGACCACTTCACCGCCGTGAac > 1:3070300/1‑62 (MQ=255) gACTCCGGCACCGCCATAATCGCTTCCAGCGGACCTTCTACGAc < 1:913364/44‑1 (MQ=255) gACTCCGGCACCGCCATAATCGCTTCCAGCGGACCTTCTACGAc < 1:732347/44‑1 (MQ=255) tCCGGCACCGCCATAATCGCTTCCAGCGGACCTTCTGCGACCACTTCACCGCCGTGAACACCTGCGCCCg > 1:855989/1‑70 (MQ=255) tCCGGCACCGCCATAATCGCTTCCAGCGGACCTTCTGCGACCACTTCACCGCCGTGAACACCTGCGCCCg > 1:3421776/1‑70 (MQ=255) tCCGGCACCGCCATAATCGCTTCCAGCGGACCTTCTACGAc < 1:93966/41‑1 (MQ=255) tCCGGCACCGCCATAATCGCTTCCAGCGGACCTTCTACGACCACTTCACCGCCGTGa > 1:239750/1‑57 (MQ=255) tCCGGCACCGCCATAATCGCTTCCAGCGGACCTTCTACGACCACTTCACCGCCGTGAACACCTGCGCCCgg > 1:3101480/1‑71 (MQ=255) cGGCACCGCCATAATCGCTTCCAGCGGACCTTCTGCGACCACTTCACCGCCGTGAACACCTgc > 1:285407/1‑63 (MQ=255) cGGCACCGCCATAATCGCTTCCAGCGGACCTTCTGCGACCACTTCACCGCCGTGAACACCTGCGCCCgg < 1:2915442/69‑1 (MQ=255) cGGCACCGCCATAATCGCTTCCAGCGGACCTTCTACGACCACTTc > 1:2070475/1‑45 (MQ=255) cGGCACCGCCATAATCGCTTCCAGCGGACCTTCTACGACCACTTCACCGCCGTGAACACCTGCGCCCGGGc > 1:234621/1‑71 (MQ=255) ggCACCGCCATAATCGCTTCCAGCGGACCTTCTGCGACCa > 1:3483597/1‑40 (MQ=255) gCACCGCCATAATCGCTTCCAGCGGACCTTGTGCGACCACTTCACCGCCGTGAACACCTGCGCCCGGGcc > 1:3410679/1‑70 (MQ=255) gCACCGCCATAATCGCTTCCAGCGGACCTTCTGCGACCACTTCACCGCCGTGAACACCTGCGCCCGGGcc > 1:3342375/1‑70 (MQ=255) gCACCGCCATAATCGCTTCCAGCGGACCTTCTACGACCACTTCACCGCCGTGAac > 1:2639996/1‑55 (MQ=255) gCACCGCCATAATCGCTTCCAGCGGACCTTCTACGACCACTTCACAGCCGTGAac > 1:3698724/1‑55 (MQ=255) cGCCATAATCGCTTCCAGCGGACCTTCTACGACCACTTc < 1:2039100/39‑1 (MQ=255) gCCATAATCGCTTCCAGCGGACCTTCTGCGACCACTTCACCGCCGTGAACACCTGCGCCCGGGCCAATGTc > 1:3680066/1‑71 (MQ=255) ccATAATCGCTTCCAGCGGACCTTCTGCGACCACTTCACCGCCGTGaa > 1:2569344/1‑48 (MQ=255) ccATAATCGCTTCCAGCGGACCTTCTGCGACCACTTCACCGCCGTGaa > 1:270076/1‑48 (MQ=255) ccATAATCGCTTCCAGCGGACCTTCTGCGACCACTTCACCGCCGTGAACACCTGCGCCCGGGCCAATGTc > 1:1180594/1‑70 (MQ=255) aTCGCTTCCAGCGGACCTTCTGCGCCCACTTCACCGCCGTGAACACCTGCGCCCGGGCCAATGTCGATca > 1:322035/1‑70 (MQ=255) aTCGCTTCCAGCGGACCTTCTGCGACCACTTCACCGCCGTGAACACCTGCGcc > 1:1165009/1‑53 (MQ=255) aTCGCTTCCAGCGGACCTTCTACGACCACTTCACCGCCGTGAACACCTGCGCCCGGGCCAATGTCGATca > 1:3116267/1‑70 (MQ=255) aTCGCTTCCAGCGGACCTTCTACGACCACTTCACCGCCGTGAACACCTGCGCCCGGGCCAATGTCGATca < 1:2831757/70‑1 (MQ=255) aTCGCTTCCAGCGGACCTTCTACGACCACTTCACCGCCGTGAACACCTGCGCCCGGGCCAATGTCGATca > 1:3487182/1‑70 (MQ=255) cGCTTCCAGCGGACCTTCTGCGACCACTTCACCGCCGTGAACACCTGCGCCCGGGCCAATGTCGATCACAt > 1:3073070/1‑71 (MQ=255) cGCTTCCAGCGGACCTTCTGCGACCACTTCACCGCCGTGAACACCTGCGCCCGGGCCAATGTCGATCACAt > 1:185811/1‑71 (MQ=255) gCTTCCAGCGGACCTTCTACGACCACTTCACCGCCGTGaa > 1:3524395/1‑40 (MQ=255) gCTTCCAGCGGACCTTCTACGACCACTTCACCGCCGTGaa > 1:1687958/1‑40 (MQ=255) gCTTCCAGCGGACCTTCTACGACCACTTCACCGCCGTGaa > 1:1691105/1‑40 (MQ=255) gCTTCCAGCGGACCTTCTACGACCACTTCACCGCCGTGaa > 1:3160824/1‑40 (MQ=255) gCTTCCAGCGGACCTTCTACGACCACTTCACCGCCGTGaa > 1:514976/1‑40 (MQ=255) gCTTCCAGCGGACCTTCTACGACCACTTCACCGCCGTGAACACCTGCGCCCGGGCCAATGTCGATCACATg > 1:2705992/1‑71 (MQ=255) ccAGCGGACCTTCTACGACCACTTCACCGCCGTGAACACCTGCGCCCGGGCCAATGTCGATCACATGGt > 1:1783828/1‑69 (MQ=255) ccAGCGGACCTTCTACGACCACTTCACCGCCGTGAACACCTGCGCCCGGGCCAATGTCGATCACATGGt > 1:2762187/1‑69 (MQ=255) ccAGCGGACCTTCTACGACCACTTCACCGCCGTGAACACCTGCGCCCGGGCCAATGTCGATCACATGGt > 1:1708295/1‑69 (MQ=255) ccAGCGGACCTTCTACGACCACTTCACCGCCGTGAACACCTGCGCCCGGGCCAATGTCGATCACATGGt > 1:3033727/1‑69 (MQ=255) ggACCTTCTGCGACCACTTCACCGCCGTGAACACCTGCGCCCGGGCCAATGTCGATCACATGGTCAgcggc > 1:1883795/1‑71 (MQ=255) ggACCTTCTGCGACCACTTCACCGCCGTGAACACCTGCGCCCGGGCCAATGTCGATCACATGGTCAgcgg > 1:1326201/1‑70 (MQ=255) ggACCTTCTACGACCACTTCACCGCCGTGAACACCTGCGCCCGGGCCAATGTCGATCACATGGTCAgcgg < 1:2939328/70‑1 (MQ=255) tCTACGACCACTTCACCGCCGTGAACACCTGCGCCCGGGCCAATGTCg > 1:3526066/1‑48 (MQ=255) tCTACGACCACTTCACCGCCGTGAACACCTGCGCCCGGGCCAATGTCg > 1:2974053/1‑48 (MQ=255) tCTACGACCACTTCACCGCCGTGAACACCTGCGCCCGGGCCAATGTCGATCACATGGTCAgcgg > 1:1236172/1‑64 (MQ=255) | TGCCGCTCATGTACTGCCCGGTCAACGACTCCGGCACCGCCATAATCGCTTCCAGCGGACCTTCTGCGACCACTTCACCGCCGTGAACACCTGCGCCCGGGCCAATGTCGATCACATGGTCAGCGGC > minE/2810963‑2811089 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |