| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | minE | 291,204 | T→C | 50.0% | I274T (ATC→ACC) | ppiD → | peptidyl‑prolyl cis‑trans isomerase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | minE | 291,204 | 0 | T | C | 50.0% | ‑5.7 / 70.5 | 48 | I274T (ATC→ACC) | ppiD | peptidyl‑prolyl cis‑trans isomerase |
| Reads supporting (aligned to +/- strand): ref base T (10/14); new base C (12/12); total (22/26) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.72e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.59e-01 | |||||||||||
ATCCAGAGCTACTACGACCAGCATCAGGATCAATTCACCCAGCCGCAGCGTACCCGCTACAGCATCATCCAGACCAAAACTGAAGATGAAGCGAAAGCGGTACTTGATGAGCTGAATAAAGGCGGTGATTTTGCTG > minE/291137‑291272 | atCCAGAGCTACTACGACCAGCATCAGGATCAATTCACCCAGCCGCAGCGTACCCGCTACAGCatcatc > 1:162115/1‑69 (MQ=255) tCCAGAGCTACTACGACCAGCATCAGGATCAATTCACCCAGCCGCAGCGTACCCGCTACAGCATCATCCAg < 1:118701/71‑1 (MQ=255) tCCAGAGCTACTACGACCAGCATCAGGATCAATTCACCCAGCCGCAGCGTACCCGCTACAGCATCACCCa < 1:2971418/70‑1 (MQ=255) ctacGACCAGCATCAGGATCAATTCACCCAGCCGCAGCGTACCCGCTACAGCATCACCCAGa > 1:3122051/1‑62 (MQ=255) ctacGACCAGCATCAGGATCAATTCACCCAGCCGCAGCGTACCCGCTACAGCATCACCCAGa > 1:3140693/1‑62 (MQ=255) ctacGACCAGCATCAGGATCAATTCACCCAGCCGCAGCGTACCCGCTACAGCATCACCCAGACCAAAACt > 1:3104991/1‑70 (MQ=255) tacGACCAGCATCAGGATCAATTCACCCAGCCGCAGCGTACCCGCTACAGCATCATCCAGAcc > 1:1850973/1‑63 (MQ=255) tacGACCAGCATCAGGATCAATTCACCCAGCCGCAGCGTACCCGCTACAGCATCATCCAGACCaa > 1:1496661/1‑65 (MQ=255) gACCAGCATCAGGATCAATTCACCCAGCCGCAGCGTACCCGCTACAGCATCATCCAGACCAAAACTg > 1:1097170/1‑67 (MQ=255) gACCAGCATCAGGATCAATTCACCCAGCCGCAGCGTACCCGCTACAGCATCACCCAGACCAAAACTg < 1:1417619/67‑1 (MQ=255) cAGCATCAGGATCAATTCACCCAGCCGCAGCGTACCCGCTACAGCATCAccc < 1:3651419/52‑1 (MQ=255) aGCATCAGGATCAATTCACCCAGCCGCAGCGTACCCGCTACAGCATCATCCAg < 1:1315739/53‑1 (MQ=255) aGCATCAGGATCAATTCACCCAGCCGCAGCGTACCCGCTACAGCATCATCCAg < 1:724861/53‑1 (MQ=255) aGCATCAGGATAAATTCACCCAGCCGCAGCGTACCCGCTACAGCATCATCCAGACCAAAACTGAAGATg > 1:1784397/1‑69 (MQ=255) gCATCAGGATCAATTCACCCAGCCGCAGCGTACCCGCTACAGCATCACCCAGACCAAAACTGAAGATGAAg > 1:2526810/1‑71 (MQ=255) cATCAGGATCAATTCACCCAGCCGCAGCGTACCCGCTACAGCATCATCCAGACCAAAACTGAAGATGAAGc > 1:905566/1‑71 (MQ=255) gATCAATTCACCCAGCCGCAGCGTACCCGCTACAGCATCATCCAGACCAAAACTGAAGATGAAGCGAAAGc < 1:2493395/71‑1 (MQ=255) gATCAATTCACCCAGCCGCAGCGTACCCGCTACAGCATCATCCAGACCAAAACTGAAGATGAAGCGAAAGc < 1:2657966/71‑1 (MQ=255) gATCAATTCACCCAGCCGCAGCGTACCCGCTACAGCATCATCCAGACCAAAACTGAAGATGAAGCGAAAGc < 1:580998/71‑1 (MQ=255) aTCAATTCACCCAGCCGCAGCGTACCCGCTACAGCATCATCCAGACCAAAACTGAAGATGAAGCGAAAGCg < 1:214953/71‑1 (MQ=255) cAATTCACCCAGCCGCAGCGTACCCGCTACAGCATCACCCAGACCAAAACTGAAGATGAAGCGAAAGCgg > 1:1580820/1‑70 (MQ=255) ccAGCCGCAGCGTACCCGCTACAGCATCATCCAGACCAAAACTGAAGATGAAGCGAAAGCGGt < 1:2688169/63‑1 (MQ=255) ccAGCCGCAGCGTACCCGCTACAGCATCATCCAGACCAAAACTGAAGATGAAGCGAAAGCGGt < 1:2113661/63‑1 (MQ=255) ccAGCCGCAGCGTACCCGCTACAGCATCATCCAGACCAAAACTGAAGATGAAGCGAAAGCGGt < 1:2311941/63‑1 (MQ=255) ccAGCCGCAGCGTACCCGCTACAGCATCACCCAGACCAAAACTGAAGATGAAGCGAAAGCgg > 1:3248652/1‑62 (MQ=255) ccAGCCGCAGCGTACCCGCTACAGCATCACCCAGACCAAAACTGAAGATGAAGCGAAAGCgg > 1:3355430/1‑62 (MQ=255) ccAGCCGCAGCGTACCCGCTACAGCATCACCCAGACCAAAACTGAAGATGAAGCGAAAGCgg > 1:2241791/1‑62 (MQ=255) ccAGCCGCAGCGTACCCGCTACAGCATCACCCAGACCAAAACTGAAGATGAAGCGAAAGCgg > 1:2247751/1‑62 (MQ=255) cAGCCGCAGCGTACCCACTACAGCATCATCCAGACCAAAACTGAAGATGAAGCGAAAGCGGt < 1:264108/62‑1 (MQ=255) aGCCGCAGCGTACCCGCTACAGCATCATCCAGACCAAAACTGAAGATGAAGCGAAAGCg > 1:1510301/1‑59 (MQ=255) aGCCGCAGCGTACCCGCTACAGCATCACCCAGACCAAAACTGAAGATGa > 1:919965/1‑49 (MQ=255) aGCCGCAGCGTACCCGCTACAGCATCACCCAGACCAAAACTGAAGATGAAGCGAAAGCGGTACTTGATGAg > 1:1306146/1‑71 (MQ=255) ccGCAGCGTACCCGCTACAGCATCATCCAGACCAAAACTGAAGATGAAGCGAAAGCGGTACTTGATGAGCt < 1:465310/71‑1 (MQ=255) ccGCAGCGTACCCGCTACAGCATCACCCAGACCAAAACTGAAGATGAAGCGAAAGCGGTACTTGATGAGc < 1:3538670/70‑1 (MQ=255) cGCAGCGTACCCGCTACAGCATCACCCAGACCAAAACTGAAGATGAAGCGAAAGCGGTACTTGATGAGCTg < 1:704939/71‑1 (MQ=255) cGCAGCGTACCCGCTACAGCATCACCCAGACCAAAACTGAAGATGAAGCGAAAGCGGTACTTGATGAGCTg < 1:1649511/71‑1 (MQ=255) cAGCGTACCCGCTACAGCATCATCCAGACCAAAACTGAAGATGAAGCGAAAGCGGTACTTGATGAGCTGaa > 1:2163287/1‑71 (MQ=255) cAGCGTACCCGCTACAGCATCATCCAGACCAAAACTGAAGATGAAGCGAAAGCGGTACTTGATGAGCTGaa > 1:3035796/1‑71 (MQ=255) gCGTACCCGCTACAGCATCATCCAGACCAAAACTGAAGATGAAGCGAAAGCGGTACTTGATGAGCTGAAt > 1:2370012/1‑70 (MQ=255) cGTACCCGCTACAGCATCACCCAGACCAAAACTGAAGATGAAGCGAAAGCGGTACTTGATGAGCTGAATaa < 1:1716466/71‑1 (MQ=255) tACCCGCTACAGCATCATCCAGACCAAAACTGAAGATGAAGCGAAAGCGGTACTTGATGAGCTGAATAAAg > 1:2005572/1‑71 (MQ=255) cccGCTACAGCATCACCCAGACCAAAACTGAAGATGAAGCGAAAGCGGTACTTGATGAGCTGAATAAAgg > 1:145010/1‑70 (MQ=255) ccGCTACAGCATCATCCAGACCAAAACTGAAGATGAAGCGAAAGCGGt < 1:144999/48‑1 (MQ=255) ccGCTACAGCATCATCCAGACCAAAACTGAAGATGAAGCGAAAGCGGTACTTGATGAGCTGAATAAAGGCg < 1:2110621/71‑1 (MQ=255) ccGCTACAGCATCACCCAGACCAAAACTGAAGATGAAGCGAAAGCGGTACTTGATGAGCTGAATAAAGGCg < 1:3437545/71‑1 (MQ=255) ccGCTACAGCATCACCCAGACCAAAACTGAAGATGAAGCGAAAGCGGTACTTGATGAGCTGAATAAAGGCg < 1:416443/71‑1 (MQ=255) cAGCATCACCCAGACCAAAACTGAAGATGAAGCGAAAGCGGTACTTGATGAGCTGAATAAAGGCg < 1:3478859/65‑1 (MQ=255) cAGCATCACCCAGACCAAAACTGAAGATGAAGCGAAAGCGGTACTTGATGAGCTGAATAAAGGCGGTGAtt < 1:1673759/71‑1 (MQ=255) cAGCATCACCCAGACCAAAACTGAAGATGAAGCGAAAGCGGTACTTGATGAGCTGAATAAAGGCGGTGAtt < 1:681586/71‑1 (MQ=255) aGCATCACCCAGACCAAAACTGAAGATGAAGCGAAAGCGGTACTTGATGAGCTGAATAAAGGCGGTGAttt < 1:3653721/71‑1 (MQ=255) catcatCCAGACCAAAACTGAAGATGAAGCGAAAGCGGTACTTGATGAGCTGAATAAAGGCGGTGATTTtg < 1:3392292/71‑1 (MQ=255) catcacCCAGACCAAAACTGAAGATGAAGCGAAAGCGGTACTTGATGAGCTGAATAAAGGCGGTGAtttt < 1:2119150/70‑1 (MQ=255) catcacCCAGACCAAAACTGAAGATGAAGCGAAAGCGGTACTTGATGAGCTGAATAAAGGCGGTGATTTtg < 1:1522133/71‑1 (MQ=255) catcacCCAGACCAAAACTGAAGATGAAGCGAAAGCGGTACTTGATGAGCTGAATAAAGGCGGTGATTTtg < 1:3120611/71‑1 (MQ=255) tcaccCAGACCAAAACTGAAGCTGAAGCGAAAGCGGTACTTGATGAGCTGAATAAAGGCGGTGATTTtgct > 1:1167343/1‑71 (MQ=255) tcaccCAGACCAAAACTGAAGATGAAGCGAAAGCGGTACTTGATGAGCTGAATAAAGGCGGTGATTTtgct > 1:1705182/1‑71 (MQ=255) atcCAGACCAAAACTGAAGATGAAGCGAAAGCGGTACTTGATGAGCTGAATAAAGGCGGTGATTTtgctg < 1:1871853/70‑1 (MQ=255) | ATCCAGAGCTACTACGACCAGCATCAGGATCAATTCACCCAGCCGCAGCGTACCCGCTACAGCATCATCCAGACCAAAACTGAAGATGAAGCGAAAGCGGTACTTGATGAGCTGAATAAAGGCGGTGATTTTGCTG > minE/291137‑291272 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |