Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1938752	1938936	185	62 [0]	[0] 70	xerD	site‑specific tyrosine recombinase

GGGGCAATTTCGGTGAAGCGAGATGCGCACTGGGATCGTCTTCACGAAACTTTTCGCGA  >  minE/1938693‑1938751                                                           | ggggCAATTTGGGTGAAGCGAGATGCGCACTGGGATCGTCTTCACGAAACTTTTCGCGa  >  1:3338697/1‑59 (MQ=255) ggggCAATTTCGGTGAAGCGAGATGCGCACTGGGATCGTCTTCACGAAACTTTTGGCGa  >  1:2030693/1‑59 (MQ=255) ggggCAATTTCGGTGAAGCGAGATGCGCACTGGGATCGTCTTCACGAAACTTTTCGCGa  >  1:525960/1‑59 (MQ=255) ggggCAATTTCGGTGAAGCGAGATGCGCACTGGGATCGTCTTCACGAAACTTTTCGCGa  >  1:1022632/1‑59 (MQ=255) ggggCAATTTCGGTGAAGCGAGATGCGCACTGGGATCGTCTTCACGAAACTTTTCGCGa  >  1:2949915/1‑59 (MQ=255) ggggCAATTTCGGTGAAGCGAGATGCGCACTGGGATCGTCTTCACGAAACTTTTCGCGa  >  1:2992696/1‑59 (MQ=255) ggggCAATTTCGGTGAAGCGAGATGCGCACTGGGATCGTCTTCACGAAACTTTTCGCGa  >  1:3000097/1‑59 (MQ=255) ggggCAATTTCGGTGAAGCGAGATGCGCACTGGGATCGTCTTCACGAAACTTTTCGCGa  >  1:3044488/1‑59 (MQ=255) ggggCAATTTCGGTGAAGCGAGATGCGCACTGGGATCGTCTTCACGAAACTTTTCGCGa  >  1:3137163/1‑59 (MQ=255) ggggCAATTTCGGTGAAGCGAGATGCGCACTGGGATCGTCTTCACGAAACTTTTCGCGa  >  1:3147296/1‑59 (MQ=255) ggggCAATTTCGGTGAAGCGAGATGCGCACTGGGATCGTCTTCACGAAACTTTTCGCGa  >  1:315472/1‑59 (MQ=255) ggggCAATTTCGGTGAAGCGAGATGCGCACTGGGATCGTCTTCACGAAACTTTTCGCGa  >  1:3175506/1‑59 (MQ=255) ggggCAATTTCGGTGAAGCGAGATGCGCACTGGGATCGTCTTCACGAAACTTTTCGCGa  >  1:3182713/1‑59 (MQ=255) ggggCAATTTCGGTGAAGCGAGATGCGCACTGGGATCGTCTTCACGAAACTTTTCGCGa  >  1:3441634/1‑59 (MQ=255) ggggCAATTTCGGTGAAGCGAGATGCGCACTGGGATCGTCTTCACGAAACTTTTCGCGa  >  1:3552087/1‑59 (MQ=255) ggggCAATTTCGGTGAAGCGAGATGCGCACTGGGATCGTCTTCACGAAACTTTTCGCGa  >  1:37357/1‑59 (MQ=255) ggggCAATTTCGGTGAAGCGAGATGCGCACTGGGATCGTCTTCACGAAACTTTTCGCGa  >  1:418108/1‑59 (MQ=255) ggggCAATTTCGGTGAAGCGAGATGCGCACTGGGATCGTCTTCACGAAACTTTTCGCGa  >  1:2838830/1‑59 (MQ=255) ggggCAATTTCGGTGAAGCGAGATGCGCACTGGGATCGTCTTCACGAAACTTTTCGCGa  >  1:547448/1‑59 (MQ=255) ggggCAATTTCGGTGAAGCGAGATGCGCACTGGGATCGTCTTCACGAAACTTTTCGCGa  >  1:660271/1‑59 (MQ=255) ggggCAATTTCGGTGAAGCGAGATGCGCACTGGGATCGTCTTCACGAAACTTTTCGCGa  >  1:695758/1‑59 (MQ=255) ggggCAATTTCGGTGAAGCGAGATGCGCACTGGGATCGTCTTCACGAAACTTTTCGCGa  >  1:695772/1‑59 (MQ=255) ggggCAATTTCGGTGAAGCGAGATGCGCACTGGGATCGTCTTCACGAAACTTTTCGCGa  >  1:709328/1‑59 (MQ=255) ggggCAATTTCGGTGAAGCGAGATGCGCACTGGGATCGTCTTCACGAAACTTTTCGCGa  >  1:726927/1‑59 (MQ=255) ggggCAATTTCGGTGAAGCGAGATGCGCACTGGGATCGTCTTCACGAAACTTTTCGCGa  >  1:764318/1‑59 (MQ=255) ggggCAATTTCGGTGAAGCGAGATGCGCACTGGGATCGTCTTCACGAAACTTTTCGCGa  >  1:828985/1‑59 (MQ=255) ggggCAATTTCGGTGAAGCGAGATGCGCACTGGGATCGTCTTCACGAAACTTTTCGCGa  >  1:864032/1‑59 (MQ=255) ggggCAATTTCGGTGAAGCGAGATGCGCACTGGGATCGTCTTCACGAAACTTTTCGCGa  >  1:869344/1‑59 (MQ=255) ggggCAATTTCGGTGAAGCGAGATGCGCACTGGGATCGTCTTCACGAAACTTTTCGCGa  >  1:89599/1‑59 (MQ=255) ggggCAATTTCGGTGAAGCGAGATGCGCACTGGGATCGTCTTCACGAAACTTTTCGCGa  >  1:946954/1‑59 (MQ=255) ggggCAATTTCGGTGAAGCGAGATGCGCACTGGGATCGTCTTCACGAAACTTTTCGCGa  >  1:965007/1‑59 (MQ=255) ggggCAATTTCGGTGAAGCGAGATGCGCACTGGGATCGTCTTCACGAAACTTTTCGCGa  >  1:2085983/1‑59 (MQ=255) ggggCAATTTCGGTGAAGCGAGATGCGCACTGGGATCGTCTTCACGAAACTTTTCGCGa  >  1:108766/1‑59 (MQ=255) ggggCAATTTCGGTGAAGCGAGATGCGCACTGGGATCGTCTTCACGAAACTTTTCGCGa  >  1:1131286/1‑59 (MQ=255) ggggCAATTTCGGTGAAGCGAGATGCGCACTGGGATCGTCTTCACGAAACTTTTCGCGa  >  1:1240129/1‑59 (MQ=255) ggggCAATTTCGGTGAAGCGAGATGCGCACTGGGATCGTCTTCACGAAACTTTTCGCGa  >  1:1429642/1‑59 (MQ=255) ggggCAATTTCGGTGAAGCGAGATGCGCACTGGGATCGTCTTCACGAAACTTTTCGCGa  >  1:1467171/1‑59 (MQ=255) ggggCAATTTCGGTGAAGCGAGATGCGCACTGGGATCGTCTTCACGAAACTTTTCGCGa  >  1:1587437/1‑59 (MQ=255) ggggCAATTTCGGTGAAGCGAGATGCGCACTGGGATCGTCTTCACGAAACTTTTCGCGa  >  1:1617274/1‑59 (MQ=255) ggggCAATTTCGGTGAAGCGAGATGCGCACTGGGATCGTCTTCACGAAACTTTTCGCGa  >  1:1856709/1‑59 (MQ=255) ggggCAATTTCGGTGAAGCGAGATGCGCACTGGGATCGTCTTCACGAAACTTTTCGCGa  >  1:1883564/1‑59 (MQ=255) ggggCAATTTCGGTGAAGCGAGATGCGCACTGGGATCGTCTTCACGAAACTTTTCGCGa  >  1:194765/1‑59 (MQ=255) ggggCAATTTCGGTGAAGCGAGATGCGCACTGGGATCGTCTTCACGAAACTTTTCGCGa  >  1:1958957/1‑59 (MQ=255) ggggCAATTTCGGTGAAGCGAGATGCGCACTGGGATCGTCTTCACGAAACTTTTCGCGa  >  1:2021206/1‑59 (MQ=255) ggggCAATTTCGGTGAAGCGAGATGCGCACTGGGATCGTCTTCACGAAACTTTTCGCGa  >  1:203907/1‑59 (MQ=255) ggggCAATTTCGGTGAAGCGAGATGCGCACTGGGATCGTCTTCACGAAACTTTTCGCGa  >  1:207705/1‑59 (MQ=255) ggggCAATTTCGGTGAAGCGAGATGCGCACTGGGATCGTCTTCACGAAACTTTTCGCGa  >  1:282313/1‑59 (MQ=255) ggggCAATTTCGGTGAAGCGAGATGCGCACTGGGATCGTCTTCACGAAACTTTTCGCGa  >  1:2119677/1‑59 (MQ=255) ggggCAATTTCGGTGAAGCGAGATGCGCACTGGGATCGTCTTCACGAAACTTTTCGCGa  >  1:220746/1‑59 (MQ=255) ggggCAATTTCGGTGAAGCGAGATGCGCACTGGGATCGTCTTCACGAAACTTTTCGCGa  >  1:2223463/1‑59 (MQ=255) ggggCAATTTCGGTGAAGCGAGATGCGCACTGGGATCGTCTTCACGAAACTTTTCGCGa  >  1:2309092/1‑59 (MQ=255) ggggCAATTTCGGTGAAGCGAGATGCGCACTGGGATCGTCTTCACGAAACTTTTCGCGa  >  1:2312456/1‑59 (MQ=255) ggggCAATTTCGGTGAAGCGAGATGCGCACTGGGATCGTCTTCACGAAACTTTTCGCGa  >  1:2313140/1‑59 (MQ=255) ggggCAATTTCGGTGAAGCGAGATGCGCACTGGGATCGTCTTCACGAAACTTTTCGCGa  >  1:2372892/1‑59 (MQ=255) ggggCAATTTCGGTGAAGCGAGATGCGCACTGGGATCGTCTTCACGAAACTTTTCGCGa  >  1:24724/1‑59 (MQ=255) ggggCAATTTCGGTGAAGCGAGATGCGCACTGGGATCGTCTTCACGAAACTTTTCGCGa  >  1:2508394/1‑59 (MQ=255) ggggCAATTTCGGTGAAGCGAGATGCGCACTGGGATCGTCTTCACGAAACTTTTCGCGa  >  1:2612562/1‑59 (MQ=255) ggggCAATTTCGGTGAAGCGAGATGCGCACTGGGATCGTCTTCACGAAACTTTTCGCGa  >  1:2618666/1‑59 (MQ=255) ggggCAATTTCGGTGAAGCGAGATGCGCACTGGGATCGTCTTCACGAAACTTTTCGCGa  >  1:2654351/1‑59 (MQ=255) ggggCAATTTCGGTGAAGCGAGATGCGCACTGGGATCGTCTTCACGAAACTATTCGCGa  >  1:3165462/1‑59 (MQ=255) ggggCAATTTCGGTGAAGCGAGATGCGAACTGGGATCGTCTTCACGAAACTTTTCGCGa  >  1:2973762/1‑59 (MQ=255) ggggCAAATTCGGTGAAGAGAGATGCGCACTGGGATCGTCTTCACGAAACTTTTCGCGa  >  1:1143497/1‑59 (MQ=255)                                                           | GGGGCAATTTCGGTGAAGCGAGATGCGCACTGGGATCGTCTTCACGAAACTTTTCGCGA  >  minE/1938693‑1938751

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑