Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	1980534	1980555	22	39 [0]	[0] 5	yqgF	predicted Holliday junction resolvase

TGGTGTGGCAGGACACGCCTGATGAGTGGAACCTTACTCGCCTTCGACTTCGGCACCAAAA  >  minE/1980473‑1980533                                                             | tGGTGTGGCAGGACACGCCTGATTAGTGGAACCTTACTCGCCTTCGACTTCGGCACCaaaa  <  1:2651962/61‑1 (MQ=255) tGGTGTGGCAGGACACGCCTGATGAGTGGAACCTTACTCGCCTTCGACTTCGGCACCaaaa  <  1:3329316/61‑1 (MQ=255) tGGTGTGGCAGGACACGCCTGATGAGTGGAACCTTACTCGCCTTCGACTTCGGCACCaaaa  <  1:2587090/61‑1 (MQ=255) tGGTGTGGCAGGACACGCCTGATGAGTGGAACCTTACTCGCCTTCGACTTCGGCACCaaaa  <  1:2613659/61‑1 (MQ=255) tGGTGTGGCAGGACACGCCTGATGAGTGGAACCTTACTCGCCTTCGACTTCGGCACCaaaa  <  1:294331/61‑1 (MQ=255) tGGTGTGGCAGGACACGCCTGATGAGTGGAACCTTACTCGCCTTCGACTTCGGCACCaaaa  <  1:3103140/61‑1 (MQ=255) tGGTGTGGCAGGACACGCCTGATGAGTGGAACCTTACTCGCCTTCGACTTCGGCACCaaaa  <  1:3211093/61‑1 (MQ=255) tGGTGTGGCAGGACACGCCTGATGAGTGGAACCTTACTCGCCTTCGACTTCGGCACCaaaa  <  1:3215161/61‑1 (MQ=255) tGGTGTGGCAGGACACGCCTGATGAGTGGAACCTTACTCGCCTTCGACTTCGGCACCaaaa  <  1:3262213/61‑1 (MQ=255) tGGTGTGGCAGGACACGCCTGATGAGTGGAACCTTACTCGCCTTCGACTTCGGCACCaaaa  <  1:2600832/61‑1 (MQ=255) tGGTGTGGCAGGACACGCCTGATGAGTGGAACCTTACTCGCCTTCGACTTCGGCACCaaaa  <  1:3410046/61‑1 (MQ=255) tGGTGTGGCAGGACACGCCTGATGAGTGGAACCTTACTCGCCTTCGACTTCGGCACCaaaa  <  1:3526105/61‑1 (MQ=255) tGGTGTGGCAGGACACGCCTGATGAGTGGAACCTTACTCGCCTTCGACTTCGGCACCaaaa  <  1:3607921/61‑1 (MQ=255) tGGTGTGGCAGGACACGCCTGATGAGTGGAACCTTACTCGCCTTCGACTTCGGCACCaaaa  <  1:3622776/61‑1 (MQ=255) tGGTGTGGCAGGACACGCCTGATGAGTGGAACCTTACTCGCCTTCGACTTCGGCACCaaaa  <  1:468378/61‑1 (MQ=255) tGGTGTGGCAGGACACGCCTGATGAGTGGAACCTTACTCGCCTTCGACTTCGGCACCaaaa  <  1:541243/61‑1 (MQ=255) tGGTGTGGCAGGACACGCCTGATGAGTGGAACCTTACTCGCCTTCGACTTCGGCACCaaaa  <  1:702309/61‑1 (MQ=255) tGGTGTGGCAGGACACGCCTGATGAGTGGAACCTTACTCGCCTTCGACTTCGGCACCaaaa  <  1:92637/61‑1 (MQ=255) tGGTGTGGCAGGACACGCCTGATGAGTGGAACCTTACTCGCCTTCGACTTCGGCACCaaaa  <  1:2092936/61‑1 (MQ=255) tGGTGTGGCAGGACACGCCTGATGAGTGGAACCTTACTCGCCTTCGACTTCGGCACCaaaa  <  1:1173898/61‑1 (MQ=255) tGGTGTGGCAGGACACGCCTGATGAGTGGAACCTTACTCGCCTTCGACTTCGGCACCaaaa  <  1:1370393/61‑1 (MQ=255) tGGTGTGGCAGGACACGCCTGATGAGTGGAACCTTACTCGCCTTCGACTTCGGCACCaaaa  <  1:15907/61‑1 (MQ=255) tGGTGTGGCAGGACACGCCTGATGAGTGGAACCTTACTCGCCTTCGACTTCGGCACCaaaa  <  1:1622995/61‑1 (MQ=255) tGGTGTGGCAGGACACGCCTGATGAGTGGAACCTTACTCGCCTTCGACTTCGGCACCaaaa  <  1:1772616/61‑1 (MQ=255) tGGTGTGGCAGGACACGCCTGATGAGTGGAACCTTACTCGCCTTCGACTTCGGCACCaaaa  <  1:1806007/61‑1 (MQ=255) tGGTGTGGCAGGACACGCCTGATGAGTGGAACCTTACTCGCCTTCGACTTCGGCACCaaaa  <  1:1889531/61‑1 (MQ=255) tGGTGTGGCAGGACACGCCTGATGAGTGGAACCTTACTCGCCTTCGACTTCGGCACCaaaa  <  1:1896510/61‑1 (MQ=255) tGGTGTGGCAGGACACGCCTGATGAGTGGAACCTTACTCGCCTTCGACTTCGGCACCaaaa  <  1:2535896/61‑1 (MQ=255) tGGTGTGGCAGGACACGCCTGATGAGTGGAACCTTACTCGCCTTCGACTTCGGCACCaaaa  <  1:2282476/61‑1 (MQ=255) tGGTGTGGCAGGACACGCCTGATGAGTGGAACCTTACTCGCCTTCGACTTCGGCACCaaaa  <  1:2308969/61‑1 (MQ=255) tGGTGTGGCAGGACACGCCTGATGAGTGGAACCTTACTCGCCTTCGACTTCGGCACCaaaa  <  1:2325781/61‑1 (MQ=255) tGGTGTGGCAGGACACGCCTGATGAGTGGAACCTTACTCGCCTTCGACTTCGGCACCaaaa  <  1:2341930/61‑1 (MQ=255) tGGTGTGGCAGGACACGCCTGATGAGTGGAACCTTACTCGCCTTCGACTTCGGCACCaaaa  <  1:2409834/61‑1 (MQ=255) tGGTGTGGCAGGACACGCCTGATGAGTGGAACCTTACTCGCCTTCGACTTCGGCACCaaaa  <  1:2516126/61‑1 (MQ=255) tGGTGTGGCAGGACACGCCTGATGAGTGGAACCTTACTCGCCTTCGACTTCGGCACCaaaa  <  1:2524458/61‑1 (MQ=255) tGGTGTGGCAGGACACGCCTGATGAGTGGAACCTTACTCGCATTCGACTTCGGCACCaaaa  <  1:1009/61‑1 (MQ=255) tGGTGTGGCAGGACACGCCTGACGAGTGGAACCTTACTCGCCTTCGACTTCGGCACCaaaa  <  1:438364/61‑1 (MQ=255)                     gatgaGTGGAACCTTACTCGCCTTCGACTTCGGCACCaaaa  <  1:661188/41‑1 (MQ=255)                         aGTGGAACCTTACTCGCCTTCGACTTCGGCACCaaaa  <  1:2652195/37‑1 (MQ=255)                                                             | TGGTGTGGCAGGACACGCCTGATGAGTGGAACCTTACTCGCCTTCGACTTCGGCACCAAAA  >  minE/1980473‑1980533

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑