Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	2110573	2110585	13	52 [0]	[0] 36	agaD	N‑acetylgalactosamine‑specific enzyme IID component of PTS

AGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAATGAAGAAGAGGACTACAGCAATGGGATC  >  minE/2110511‑2110572                                                              | agcaAGCGCAACCGCAGCCCGTTGCCAGTAAAAATGAAGAAGAGGATTACAGCAATGGGATc  <  1:3401965/62‑1 (MQ=255) agcaAGCGCAACCGCAGCCCGTTGCCAGTAAAAATGAAGAAGAGGACTACAGCAATGGGATc  <  1:3285770/62‑1 (MQ=255) agcaAGCGCAACCGCAGCCCGTTGCCAGTAAAAATGAAGAAGAGGACTACAGCAATGGGATc  <  1:2550145/62‑1 (MQ=255) agcaAGCGCAACCGCAGCCCGTTGCCAGTAAAAATGAAGAAGAGGACTACAGCAATGGGATc  <  1:2627394/62‑1 (MQ=255) agcaAGCGCAACCGCAGCCCGTTGCCAGTAAAAATGAAGAAGAGGACTACAGCAATGGGATc  <  1:2805953/62‑1 (MQ=255) agcaAGCGCAACCGCAGCCCGTTGCCAGTAAAAATGAAGAAGAGGACTACAGCAATGGGATc  <  1:2926306/62‑1 (MQ=255) agcaAGCGCAACCGCAGCCCGTTGCCAGTAAAAATGAAGAAGAGGACTACAGCAATGGGATc  <  1:298931/62‑1 (MQ=255) agcaAGCGCAACCGCAGCCCGTTGCCAGTAAAAATGAAGAAGAGGACTACAGCAATGGGATc  <  1:3073242/62‑1 (MQ=255) agcaAGCGCAACCGCAGCCCGTTGCCAGTAAAAATGAAGAAGAGGACTACAGCAATGGGATc  <  1:3112680/62‑1 (MQ=255) agcaAGCGCAACCGCAGCCCGTTGCCAGTAAAAATGAAGAAGAGGACTACAGCAATGGGATc  <  1:3201956/62‑1 (MQ=255) agcaAGCGCAACCGCAGCCCGTTGCCAGTAAAAATGAAGAAGAGGACTACAGCAATGGGATc  <  1:3204932/62‑1 (MQ=255) agcaAGCGCAACCGCAGCCCGTTGCCAGTAAAAATGAAGAAGAGGACTACAGCAATGGGATc  <  1:3232173/62‑1 (MQ=255) agcaAGCGCAACCGCAGCCCGTTGCCAGTAAAAATGAAGAAGAGGACTACAGCAATGGGATc  <  1:3273944/62‑1 (MQ=255) agcaAGCGCAACCGCAGCCCGTTGCCAGTAAAAATGAAGAAGAGGACTACAGCAATGGGATc  <  1:1123169/62‑1 (MQ=255) agcaAGCGCAACCGCAGCCCGTTGCCAGTAAAAATGAAGAAGAGGACTACAGCAATGGGATc  <  1:3396414/62‑1 (MQ=255) agcaAGCGCAACCGCAGCCCGTTGCCAGTAAAAATGAAGAAGAGGACTACAGCAATGGGATc  <  1:341832/62‑1 (MQ=255) agcaAGCGCAACCGCAGCCCGTTGCCAGTAAAAATGAAGAAGAGGACTACAGCAATGGGATc  <  1:3495681/62‑1 (MQ=255) agcaAGCGCAACCGCAGCCCGTTGCCAGTAAAAATGAAGAAGAGGACTACAGCAATGGGATc  <  1:3520952/62‑1 (MQ=255) agcaAGCGCAACCGCAGCCCGTTGCCAGTAAAAATGAAGAAGAGGACTACAGCAATGGGATc  <  1:3606620/62‑1 (MQ=255) agcaAGCGCAACCGCAGCCCGTTGCCAGTAAAAATGAAGAAGAGGACTACAGCAATGGGATc  <  1:46484/62‑1 (MQ=255) agcaAGCGCAACCGCAGCCCGTTGCCAGTAAAAATGAAGAAGAGGACTACAGCAATGGGATc  <  1:46626/62‑1 (MQ=255) agcaAGCGCAACCGCAGCCCGTTGCCAGTAAAAATGAAGAAGAGGACTACAGCAATGGGATc  <  1:514699/62‑1 (MQ=255) agcaAGCGCAACCGCAGCCCGTTGCCAGTAAAAATGAAGAAGAGGACTACAGCAATGGGATc  <  1:862438/62‑1 (MQ=255) agcaAGCGCAACCGCAGCCCGTTGCCAGTAAAAATGAAGAAGAGGACTACAGCAATGGGATc  <  1:925433/62‑1 (MQ=255) agcaAGCGCAACCGCAGCCCGTTGCCAGTAAAAATGAAGAAGAGGACTACAGCAATGGGATc  <  1:2387257/62‑1 (MQ=255) agcaAGCGCAACCGCAGCCCGTTGCCAGTAAAAATGAAGAAGAGGACTACAGCAATGGGATc  <  1:1066865/62‑1 (MQ=255) agcaAGCGCAACCGCAGCCCGTTGCCAGTAAAAATGAAGAAGAGGACTACAGCAATGGGATc  <  1:1291447/62‑1 (MQ=255) agcaAGCGCAACCGCAGCCCGTTGCCAGTAAAAATGAAGAAGAGGACTACAGCAATGGGATc  <  1:1300833/62‑1 (MQ=255) agcaAGCGCAACCGCAGCCCGTTGCCAGTAAAAATGAAGAAGAGGACTACAGCAATGGGATc  <  1:1362487/62‑1 (MQ=255) agcaAGCGCAACCGCAGCCCGTTGCCAGTAAAAATGAAGAAGAGGACTACAGCAATGGGATc  <  1:1373988/62‑1 (MQ=255) agcaAGCGCAACCGCAGCCCGTTGCCAGTAAAAATGAAGAAGAGGACTACAGCAATGGGATc  <  1:1432864/62‑1 (MQ=255) agcaAGCGCAACCGCAGCCCGTTGCCAGTAAAAATGAAGAAGAGGACTACAGCAATGGGATc  <  1:1442585/62‑1 (MQ=255) agcaAGCGCAACCGCAGCCCGTTGCCAGTAAAAATGAAGAAGAGGACTACAGCAATGGGATc  <  1:1472728/62‑1 (MQ=255) agcaAGCGCAACCGCAGCCCGTTGCCAGTAAAAATGAAGAAGAGGACTACAGCAATGGGATc  <  1:1477619/62‑1 (MQ=255) agcaAGCGCAACCGCAGCCCGTTGCCAGTAAAAATGAAGAAGAGGACTACAGCAATGGGATc  <  1:1699532/62‑1 (MQ=255) agcaAGCGCAACCGCAGCCCGTTGCCAGTAAAAATGAAGAAGAGGACTACAGCAATGGGATc  <  1:1915845/62‑1 (MQ=255) agcaAGCGCAACCGCAGCCCGTTGCCAGTAAAAATGAAGAAGAGGACTACAGCAATGGGATc  <  1:1994533/62‑1 (MQ=255) agcaAGCGCAACCGCAGCCCGTTGCCAGTAAAAATGAAGAAGAGGACTACAGCAATGGGATc  <  1:2003720/62‑1 (MQ=255) agcaAGCGCAACCGCAGCCCGTTGCCAGTAAAAATGAAGAAGAGGACTACAGCAATGGGATc  <  1:2212845/62‑1 (MQ=255) agcaAGCGCAACCGCAGCCCGTTGCCAGTAAAAATGAAGAAGAGGACTACAGCAATGGGATc  <  1:2240292/62‑1 (MQ=255) agcaAGCGCAACCGCAGCCCGTTGCCAGTAAAAATGAAGAAGAGGACTACAGCAATGGGATc  <  1:228314/62‑1 (MQ=255) agcaAGCGCAACCGCAGCCCGTTGCCAGTAAAAATGAAGAAGAGGACTACAGCAATGGGATc  <  1:2364858/62‑1 (MQ=255)  gcaAGCGCAACCGCAGCCCGTTGCCAGTAAAAATGAAGAAGAGGACTACAGCAATGGGATc  <  1:1614052/61‑1 (MQ=255)  gcaAGCGCAACCGCAGCCCGTTGCCAGTAAAAATGAAGAAGAGGACTACAGCAATGGGATc  <  1:3008054/61‑1 (MQ=255)  gcaAGCGCAACCGCAGCCCGTTGCCAGTAAAAATGAAGAAGAGGACTACAGCAATGGGATc  <  1:517000/61‑1 (MQ=255)  gcaAGCGCAACCGCAGCCCGTTGCCAGTAAAAATGAAGAAGAGGACTACAGCAATGGGATc  <  1:770215/61‑1 (MQ=255)  gcaAGCGCAACCGCAGCCCGTTGCCAGTAAAAATGAAGAAGAGGACTACAGCAATGGGATc  <  1:2428749/61‑1 (MQ=255)   caAGCGCAACCGCAGCCCGTTGCCAGTAAAAATGAAGAAGAGGACTACAGCAATGGGATc  <  1:2653449/60‑1 (MQ=255)                aGCCCGTTGCCAGTAAAAATGAAGAAGAGGACTACAGCAATGGGATc  <  1:2050475/47‑1 (MQ=255)                     gTTGCCAGTAAAAATGAAGAAGAGGACTACAGCAATGGGATc  <  1:2169991/42‑1 (MQ=255)                      ttGCCAGTAAAAATGAAGAAGAGGACTACAGCAATGGGATc  <  1:1377582/41‑1 (MQ=255)                       tGCCAGTAAAAATGAAGAAGAGGACTACAGCAATGGGATc  <  1:700403/40‑1 (MQ=255)                                                              | AGCAAGCGCAACCGCAGCCCGTTGCCAGTAAAAATGAAGAAGAGGACTACAGCAATGGGATC  >  minE/2110511‑2110572

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑