Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	2172103	2172126	24	50 [0]	[0] 17	ptsN	sugar‑specific enzyme IIA component of PTS

TCGCTGGTGGCGAAACGTCTGGCGGACAAAACCATCTGCCGCCGTTTACGCGCAGCCCAG  >  minE/2172043‑2172102                                                            | tCGCTGGTGGCGAAACGTCTGGCGGACAAAACCATCTGCCGCCGTTTACGCGCAGCCCag  <  1:3616955/60‑1 (MQ=255) tCGCTGGTGGCGAAACGTCTGGCGGACAAAACCATCTGCCGCCGTTTACGCGCAGCCCag  <  1:1007778/60‑1 (MQ=255) tCGCTGGTGGCGAAACGTCTGGCGGACAAAACCATCTGCCGCCGTTTACGCGCAGCCCag  <  1:3131304/60‑1 (MQ=255) tCGCTGGTGGCGAAACGTCTGGCGGACAAAACCATCTGCCGCCGTTTACGCGCAGCCCag  <  1:3145612/60‑1 (MQ=255) tCGCTGGTGGCGAAACGTCTGGCGGACAAAACCATCTGCCGCCGTTTACGCGCAGCCCag  <  1:3207189/60‑1 (MQ=255) tCGCTGGTGGCGAAACGTCTGGCGGACAAAACCATCTGCCGCCGTTTACGCGCAGCCCag  <  1:3236229/60‑1 (MQ=255) tCGCTGGTGGCGAAACGTCTGGCGGACAAAACCATCTGCCGCCGTTTACGCGCAGCCCag  <  1:324178/60‑1 (MQ=255) tCGCTGGTGGCGAAACGTCTGGCGGACAAAACCATCTGCCGCCGTTTACGCGCAGCCCag  <  1:3254650/60‑1 (MQ=255) tCGCTGGTGGCGAAACGTCTGGCGGACAAAACCATCTGCCGCCGTTTACGCGCAGCCCag  <  1:3293558/60‑1 (MQ=255) tCGCTGGTGGCGAAACGTCTGGCGGACAAAACCATCTGCCGCCGTTTACGCGCAGCCCag  <  1:3565497/60‑1 (MQ=255) tCGCTGGTGGCGAAACGTCTGGCGGACAAAACCATCTGCCGCCGTTTACGCGCAGCCCag  <  1:3569732/60‑1 (MQ=255) tCGCTGGTGGCGAAACGTCTGGCGGACAAAACCATCTGCCGCCGTTTACGCGCAGCCCag  <  1:3613620/60‑1 (MQ=255) tCGCTGGTGGCGAAACGTCTGGCGGACAAAACCATCTGCCGCCGTTTACGCGCAGCCCag  <  1:2910321/60‑1 (MQ=255) tCGCTGGTGGCGAAACGTCTGGCGGACAAAACCATCTGCCGCCGTTTACGCGCAGCCCag  <  1:37063/60‑1 (MQ=255) tCGCTGGTGGCGAAACGTCTGGCGGACAAAACCATCTGCCGCCGTTTACGCGCAGCCCag  <  1:375153/60‑1 (MQ=255) tCGCTGGTGGCGAAACGTCTGGCGGACAAAACCATCTGCCGCCGTTTACGCGCAGCCCag  <  1:407305/60‑1 (MQ=255) tCGCTGGTGGCGAAACGTCTGGCGGACAAAACCATCTGCCGCCGTTTACGCGCAGCCCag  <  1:431273/60‑1 (MQ=255) tCGCTGGTGGCGAAACGTCTGGCGGACAAAACCATCTGCCGCCGTTTACGCGCAGCCCag  <  1:499618/60‑1 (MQ=255) tCGCTGGTGGCGAAACGTCTGGCGGACAAAACCATCTGCCGCCGTTTACGCGCAGCCCag  <  1:521035/60‑1 (MQ=255) tCGCTGGTGGCGAAACGTCTGGCGGACAAAACCATCTGCCGCCGTTTACGCGCAGCCCag  <  1:538145/60‑1 (MQ=255) tCGCTGGTGGCGAAACGTCTGGCGGACAAAACCATCTGCCGCCGTTTACGCGCAGCCCag  <  1:699568/60‑1 (MQ=255) tCGCTGGTGGCGAAACGTCTGGCGGACAAAACCATCTGCCGCCGTTTACGCGCAGCCCag  <  1:776615/60‑1 (MQ=255) tCGCTGGTGGCGAAACGTCTGGCGGACAAAACCATCTGCCGCCGTTTACGCGCAGCCCag  <  1:899492/60‑1 (MQ=255) tCGCTGGTGGCGAAACGTCTGGCGGACAAAACCATCTGCCGCCGTTTACGCGCAGCCCag  <  1:953016/60‑1 (MQ=255) tCGCTGGTGGCGAAACGTCTGGCGGACAAAACCATCTGCCGCCGTTTACGCGCAGCCCag  <  1:1573030/60‑1 (MQ=255) tCGCTGGTGGCGAAACGTCTGGCGGACAAAACCATCTGCCGCCGTTTACGCGCAGCCCag  <  1:109086/60‑1 (MQ=255) tCGCTGGTGGCGAAACGTCTGGCGGACAAAACCATCTGCCGCCGTTTACGCGCAGCCCag  <  1:1141138/60‑1 (MQ=255) tCGCTGGTGGCGAAACGTCTGGCGGACAAAACCATCTGCCGCCGTTTACGCGCAGCCCag  <  1:1179036/60‑1 (MQ=255) tCGCTGGTGGCGAAACGTCTGGCGGACAAAACCATCTGCCGCCGTTTACGCGCAGCCCag  <  1:1311255/60‑1 (MQ=255) tCGCTGGTGGCGAAACGTCTGGCGGACAAAACCATCTGCCGCCGTTTACGCGCAGCCCag  <  1:1353995/60‑1 (MQ=255) tCGCTGGTGGCGAAACGTCTGGCGGACAAAACCATCTGCCGCCGTTTACGCGCAGCCCag  <  1:1358730/60‑1 (MQ=255) tCGCTGGTGGCGAAACGTCTGGCGGACAAAACCATCTGCCGCCGTTTACGCGCAGCCCag  <  1:1392004/60‑1 (MQ=255) tCGCTGGTGGCGAAACGTCTGGCGGACAAAACCATCTGCCGCCGTTTACGCGCAGCCCag  <  1:144148/60‑1 (MQ=255) tCGCTGGTGGCGAAACGTCTGGCGGACAAAACCATCTGCCGCCGTTTACGCGCAGCCCag  <  1:1460371/60‑1 (MQ=255) tCGCTGGTGGCGAAACGTCTGGCGGACAAAACCATCTGCCGCCGTTTACGCGCAGCCCag  <  1:2899713/60‑1 (MQ=255) tCGCTGGTGGCGAAACGTCTGGCGGACAAAACCATCTGCCGCCGTTTACGCGCAGCCCag  <  1:1629213/60‑1 (MQ=255) tCGCTGGTGGCGAAACGTCTGGCGGACAAAACCATCTGCCGCCGTTTACGCGCAGCCCag  <  1:1736559/60‑1 (MQ=255) tCGCTGGTGGCGAAACGTCTGGCGGACAAAACCATCTGCCGCCGTTTACGCGCAGCCCag  <  1:1828307/60‑1 (MQ=255) tCGCTGGTGGCGAAACGTCTGGCGGACAAAACCATCTGCCGCCGTTTACGCGCAGCCCag  <  1:1893222/60‑1 (MQ=255) tCGCTGGTGGCGAAACGTCTGGCGGACAAAACCATCTGCCGCCGTTTACGCGCAGCCCag  <  1:2149112/60‑1 (MQ=255) tCGCTGGTGGCGAAACGTCTGGCGGACAAAACCATCTGCCGCCGTTTACGCGCAGCCCag  <  1:2167582/60‑1 (MQ=255) tCGCTGGTGGCGAAACGTCTGGCGGACAAAACCATCTGCCGCCGTTTACGCGCAGCCCag  <  1:2672958/60‑1 (MQ=255) tCGCTGGTGGCGAAACGTCTGGCGGACAAAACCATCTGCCGCCGTTTACGCGCAGCCCag  <  1:2768748/60‑1 (MQ=255) tCGCTGGTGGCGAAACGTCTGGCGGACAAAACCATCTGCCGCCGTTTACGCGCAGCCCag  <  1:2801570/60‑1 (MQ=255) tCGCTGGTGGCGAAACGTCTGCCGGACAAAACCATCTGCCGCCGTTTACGCGCAGCCCag  <  1:3458131/60‑1 (MQ=255) tCGCTGGTGGCGAAACGCCTGGCGGACAAAACCATCTGCCGCCGTTTACGCGCAGCCCag  <  1:432207/60‑1 (MQ=255)  cGCTGGTGGCGAAACGTCTGGCGGACAAAACCATCTGCCGCCGTTTACGCGCAGCCCag  <  1:1526436/59‑1 (MQ=255)  cGCTGGTGGCGAAACGTCTGGCGGACAAAACCATCTGCCGCCGTTTACGCGCAGCCCag  <  1:1457570/59‑1 (MQ=255)  cGCTGGTGGCGAAACGTCTGGCGGACAAAACCATCTGCCGCCGTTTACGCGCAGCCCag  <  1:2568930/59‑1 (MQ=255)                          aCAAAACCATCTGCCGCCGTTTACGCGCAGCCCag  <  1:2657146/35‑1 (MQ=255)                                                            | TCGCTGGTGGCGAAACGTCTGGCGGACAAAACCATCTGCCGCCGTTTACGCGCAGCCCAG  >  minE/2172043‑2172102

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑