Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	2239790	2239866	77	35 [0]	[0] 51	zraS	sensory histidine kinase in two‑component regulatory system with ZraR

CAGCGCCACCAGCTTCTCTTTGCGCTTCATTTCATCTTGTAGAAGCTGGCGCGAGCGCAGATA  >  minE/2239727‑2239789                                                               | cAGCGCCACCAGCTTCTCTTTGCGCTTCA‑TTCATCTTGTAGAAGCTGGCGCGAGCGCAGATa  <  1:580815/62‑1 (MQ=255)  aGCGCCACCAGCTTCTCTTTGCGCTTCATTTCATCTTGTAGAAGCTGGCGCGAGCGCAGATa  <  1:3266217/62‑1 (MQ=255)  aGCGCCACCAGCTTCTCTTTGCGCTTCATTTCATCTTGTAGAAGCTGGCGCGAGCGCAGATa  <  1:2313389/62‑1 (MQ=255)  aGCGCCACCAGCTTCTCTTTGCGCTTCATTTCATCTTGTAGAAGCTGGCGCGAGCGCAGATa  <  1:236464/62‑1 (MQ=255)  aGCGCCACCAGCTTCTCTTTGCGCTTCATTTCATCTTGTAGAAGCTGGCGCGAGCGCAGATa  <  1:2421024/62‑1 (MQ=255)  aGCGCCACCAGCTTCTCTTTGCGCTTCATTTCATCTTGTAGAAGCTGGCGCGAGCGCAGATa  <  1:2884198/62‑1 (MQ=255)  aGCGCCACCAGCTTCTCTTTGCGCTTCATTTCATCTTGTAGAAGCTGGCGCGAGCGCAGATa  <  1:2894743/62‑1 (MQ=255)  aGCGCCACCAGCTTCTCTTTGCGCTTCATTTCATCTTGTAGAAGCTGGCGCGAGCGCAGATa  <  1:300423/62‑1 (MQ=255)  aGCGCCACCAGCTTCTCTTTGCGCTTCATTTCATCTTGTAGAAGCTGGCGCGAGCGCAGATa  <  1:3062144/62‑1 (MQ=255)  aGCGCCACCAGCTTCTCTTTGCGCTTCATTTCATCTTGTAGAAGCTGGCGCGAGCGCAGATa  <  1:3190283/62‑1 (MQ=255)  aGCGCCACCAGCTTCTCTTTGCGCTTCATTTCATCTTGTAGAAGCTGGCGCGAGCGCAGATa  <  1:2212287/62‑1 (MQ=255)  aGCGCCACCAGCTTCTCTTTGCGCTTCATTTCATCTTGTAGAAGCTGGCGCGAGCGCAGATa  <  1:3443551/62‑1 (MQ=255)  aGCGCCACCAGCTTCTCTTTGCGCTTCATTTCATCTTGTAGAAGCTGGCGCGAGCGCAGATa  <  1:3614688/62‑1 (MQ=255)  aGCGCCACCAGCTTCTCTTTGCGCTTCATTTCATCTTGTAGAAGCTGGCGCGAGCGCAGATa  <  1:407365/62‑1 (MQ=255)  aGCGCCACCAGCTTCTCTTTGCGCTTCATTTCATCTTGTAGAAGCTGGCGCGAGCGCAGATa  <  1:416489/62‑1 (MQ=255)  aGCGCCACCAGCTTCTCTTTGCGCTTCATTTCATCTTGTAGAAGCTGGCGCGAGCGCAGATa  <  1:558726/62‑1 (MQ=255)  aGCGCCACCAGCTTCTCTTTGCGCTTCATTTCATCTTGTAGAAGCTGGCGCGAGCGCAGATa  <  1:905128/62‑1 (MQ=255)  aGCGCCACCAGCTTCTCTTTGCGCTTCATTTCATCTTGTAGAAGCTGGCGCGAGCGCAGATa  <  1:90738/62‑1 (MQ=255)  aGCGCCACCAGCTTCTCTTTGCGCTTCATTTCATCTTGTAGAAGCTGGCGCGAGCGCAGATa  <  1:1369356/62‑1 (MQ=255)  aGCGCCACCAGCTTCTCTTTGCGCTTCATTTCATCTTGTAGAAGCTGGCGCGAGCGCAGATa  <  1:1159091/62‑1 (MQ=255)  aGCGCCACCAGCTTCTCTTTGCGCTTCATTTCATCTTGTAGAAGCTGGCGCGAGCGCAGATa  <  1:1168637/62‑1 (MQ=255)  aGCGCCACCAGCTTCTCTTTGCGCTTCATTTCATCTTGTAGAAGCTGGCGCGAGCGCAGATa  <  1:117986/62‑1 (MQ=255)  aGCGCCACCAGCTTCTCTTTGCGCTTCATTTCATCTTGTAGAAGCTGGCGCGAGCGCAGATa  <  1:1207265/62‑1 (MQ=255)  aGCGCCACCAGCTTCTCTTTGCGCTTCATTTCATCTTGTAGAAGCTGGCGCGAGCGCAGATa  <  1:1262436/62‑1 (MQ=255)  aGCGCCACCAGCTTCTCTTTGCGCTTCATTTCATCTTGTAGAAGCTGGCGCGAGCGCAGATa  <  1:1345263/62‑1 (MQ=255)  aGCGCCACCAGCTTCTCTTTGCGCTTCATTTCATCTTGTAGAAGCTGGCGCGAGCGCAGATa  <  1:1086843/62‑1 (MQ=255)  aGCGCCACCAGCTTCTCTTTGCGCTTCATTTCATCTTGTAGAAGCTGGCGCGAGCGCAGATa  <  1:1492933/62‑1 (MQ=255)  aGCGCCACCAGCTTCTCTTTGCGCTTCATTTCATCTTGTAGAAGCTGGCGCGAGCGCAGATa  <  1:195309/62‑1 (MQ=255)  aGCGCCACCAGCTTCTCTTTGCGCTTCATTTCATCTTGTAGAAGCTGGCGCGAGCGCAGATa  <  1:202118/62‑1 (MQ=255)  aGCGCCACCAGCTTCTCTTTGCGCTTCATTTCATCTTGTAGAAGCTGGCGCGAGCGCAGATa  <  1:2107981/62‑1 (MQ=255)  aGCGCCACCAGCTTCTCTTTGCGCTTCATTTCATCTTGTAGAAGCTGGCGCGAGCGCAGATa  <  1:2136138/62‑1 (MQ=255)  aGCGCCACCAGCTTCTCTTTGCGCTTCATTTCATCTTGTAGAAGCTGGCGCGAGCGCAGATa  <  1:2143473/62‑1 (MQ=255)  aGCGCCACCAGCTTCTCTTTGCGCTTCATTTCATCTTGTAGAAGCTGGCGCGAGCGCAGATa  <  1:2198172/62‑1 (MQ=255)                          ttcatatcatCTTGTAGAAGCTGGCGCGAGCGCAGATa  <  1:1210987/38‑1 (MQ=255)                            catttcatCTTGTAGAAGCTGGCGCGAGCGCAGATa  <  1:1312812/36‑1 (MQ=255)                                                               | CAGCGCCACCAGCTTCTCTTTGCGCTTCATTTCATCTTGTAGAAGCTGGCGCGAGCGCAGATA  >  minE/2239727‑2239789

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑