Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	2319883	2319930	48	54 [0]	[0] 71	yiiQ	conserved hypothetical protein

TCTCCATCAGCCAGTTTCGAGAAGACTTTAACAGCCAGAATCCCAGCCTGCCACTGAACGAA  >  minE/2319821‑2319882                                                              | tctcCATCAGCCAGTTTCGAGAAGACTTTAACAGCCAGAATCCGAGCCTGCCACTGAACGaa  >  1:1484921/1‑62 (MQ=255) tctcCATCAGCCAGTTTCGAGAAGACTTTAACAGCCAGAATCCCAGCCTGCCACTGAACGaa  >  1:1046182/1‑62 (MQ=255) tctcCATCAGCCAGTTTCGAGAAGACTTTAACAGCCAGAATCCCAGCCTGCCACTGAACGaa  >  1:1022581/1‑62 (MQ=255) tctcCATCAGCCAGTTTCGAGAAGACTTTAACAGCCAGAATCCCAGCCTGCCACTGAACGaa  >  1:1100131/1‑62 (MQ=255) tctcCATCAGCCAGTTTCGAGAAGACTTTAACAGCCAGAATCCCAGCCTGCCACTGAACGaa  >  1:9001/1‑62 (MQ=255) tctcCATCAGCCAGTTTCGAGAAGACTTTAACAGCCAGAATCCCAGCCTGCCACTGAACGaa  >  1:554028/1‑62 (MQ=255) tctcCATCAGCCAGTTTCGAGAAGACTTTAACAGCCAGAATCCCAGCCTGCCACTGAACGaa  >  1:543930/1‑62 (MQ=255) tctcCATCAGCCAGTTTCGAGAAGACTTTAACAGCCAGAATCCCAGCCTGCCACTGAACGaa  >  1:1464899/1‑62 (MQ=255) tctcCATCAGCCAGTTTCGAGAAGACTTTAACAGCCAGAATCCCAGCCTGCCACTGAACGaa  >  1:2803421/1‑62 (MQ=255) tctcCATCAGCCAGTTTCGAGAAGACTTTAACAGCCAGAATCCCAGCCTGCCACTGAACGaa  >  1:2387953/1‑62 (MQ=255) tctcCATCAGCCAGTTTCGAGAAGACTTTAACAGCCAGAATCCCAGCCTGCCACTGAACGaa  >  1:2238660/1‑62 (MQ=255) tctcCATCAGCCAGTTTCGAGAAGACTTTAACAGCCAGAATCCCAGCCTGCCACTGAACGaa  >  1:2183899/1‑62 (MQ=255) tctcCATCAGCCAGTTTCGAGAAGACTTTAACAGCCAGAATCCCAGCCTGCCACTCAACGaa  >  1:3481238/1‑62 (MQ=255)     cATCAGCCAGTTTCGAGAAGACTTTAACAGCCAGAATGCCAGCCTGCCACTGAACGaa  <  1:91727/58‑1 (MQ=255)     cATCAGCCAGTTTCGAGAAGACTTTAACAGCCAGAATCCCAGCCTGCCACTGAACGaa  <  1:3549221/58‑1 (MQ=255)     cATCAGCCAGTTTCGAGAAGACTTTAACAGCCAGAATCCCAGCCTGCCACTGAACGaa  <  1:2619987/58‑1 (MQ=255)     cATCAGCCAGTTTCGAGAAGACTTTAACAGCCAGAATCCCAGCCTGCCACTGAACGaa  <  1:160295/58‑1 (MQ=255)     cATCAGCCAGTTTCGAGAAGACTTTAACAGCCAGAATCCCAGCCTGCCACTGAACGaa  <  1:2747229/58‑1 (MQ=255)     cATCAGCCAGTTTCGAGAAGACTTTAACAGCCAGAATCCCAGCCTGCCACTGAACGaa  <  1:2785752/58‑1 (MQ=255)     cATCAGCCAGTTTCGAGAAGACTTTAACAGCCAGAATCCCAGCCTGCCACTGAACGaa  <  1:153771/58‑1 (MQ=255)     cATCAGCCAGTTTCGAGAAGACTTTAACAGCCAGAATCCCAGCCTGCCACTGAACGaa  <  1:318694/58‑1 (MQ=255)     cATCAGCCAGTTTCGAGAAGACTTTAACAGCCAGAATCCCAGCCTGCCACTGAACGaa  <  1:3203809/58‑1 (MQ=255)     cATCAGCCAGTTTCGAGAAGACTTTAACAGCCAGAATCCCAGCCTGCCACTGAACGaa  <  1:3247502/58‑1 (MQ=255)     cATCAGCCAGTTTCGAGAAGACTTTAACAGCCAGAATCCCAGCCTGCCACTGAACGaa  <  1:1465369/58‑1 (MQ=255)     cATCAGCCAGTTTCGAGAAGACTTTAACAGCCAGAATCCCAGCCTGCCACTGAACGaa  <  1:263849/58‑1 (MQ=255)     cATCAGCCAGTTTCGAGAAGACTTTAACAGCCAGAATCCCAGCCTGCCACTGAACGaa  <  1:433805/58‑1 (MQ=255)     cATCAGCCAGTTTCGAGAAGACTTTAACAGCCAGAATCCCAGCCTGCCACTGAACGaa  <  1:461707/58‑1 (MQ=255)     cATCAGCCAGTTTCGAGAAGACTTTAACAGCCAGAATCCCAGCCTGCCACTGAACGaa  <  1:1426498/58‑1 (MQ=255)     cATCAGCCAGTTTCGAGAAGACTTTAACAGCCAGAATCCCAGCCTGCCACTGAACGaa  <  1:1410595/58‑1 (MQ=255)     cATCAGCCAGTTTCGAGAAGACTTTAACAGCCAGAATCCCAGCCTGCCACTGAACGaa  <  1:71118/58‑1 (MQ=255)     cATCAGCCAGTTTCGAGAAGACTTTAACAGCCAGAATCCCAGCCTGCCACTGAACGaa  <  1:886826/58‑1 (MQ=255)     cATCAGCCAGTTTCGAGAAGACTTTAACAGCCAGAATCCCAGCCTGCCACTGAACGaa  <  1:1121935/58‑1 (MQ=255)     cATCAGCCAGTTTCGAGAAGACTTTAACAGCCAGAATCCCAGCCTGCCACTGAACGaa  <  1:1053917/58‑1 (MQ=255)     cATCAGCCAGTTTCGAGAAGACTTTAACAGCCAGAATCCCAGCCTGCCACTGAACGaa  <  1:2172592/58‑1 (MQ=255)     cATCAGCCAGTTTCGAGAAGACTTTAACAGCCAGAATCCCAGCCTGCCACTGAACGaa  <  1:1610215/58‑1 (MQ=255)     cATCAGCCAGTTTCGAGAAGACTTTAACAGCCAGAATCCCAGCCTGCCACTGAACGaa  <  1:1620671/58‑1 (MQ=255)     cATCAGCCAGTTTCGAGAAGACTTTAACAGCCAGAATCCCAGCCTGCCACTGAACGaa  <  1:1692667/58‑1 (MQ=255)     cATCAGCCAGTTTCGAGAAGACTTTAACAGCCAGAATCCCAGCCTGCCACTGAACGaa  <  1:1803120/58‑1 (MQ=255)     cATCAGCCAGTTTCGAGAAGACTTTAACAGCCAGAATCCCAGCCTGCCACTGAACGaa  <  1:1866916/58‑1 (MQ=255)     cATCAGCCAGTTTCGAGAAGACTTTAACAGCCAGAATCCCAGCCTGCCACTGAACGaa  <  1:1905308/58‑1 (MQ=255)     cATCAGCCAGTTTCGAGAAGACTTTAACAGCCAGAATCCCAGCCTGCCACTGAACGaa  <  1:2017465/58‑1 (MQ=255)     cATCAGCCAGTTTCGAGAAGACTTTAACAGCCAGAATCCCAGCCTGCCACTGAACGaa  <  1:2591171/58‑1 (MQ=255)     cATCAGCCAGTTTCGAGAAGACTTTAACAGCCAGAATCCCAGCCTGCCACTGAACGaa  <  1:1582355/58‑1 (MQ=255)     cATCAGCCAGTTTCGAGAAGACTTTAACAGCCAGAATCCCAGCCTGCCACTGAACGaa  <  1:2193461/58‑1 (MQ=255)     cATCAGCCAGTTTCGAGAAGACTTTAACAGCCAGAATCCCAGCCTGCCACTGAACGaa  <  1:157516/58‑1 (MQ=255)     cATCAGCCAGTTTCGAGAAGACTTTAACAGCCAGAATCCCAGCCTGCCACTGAACGaa  <  1:2241698/58‑1 (MQ=255)     cATCAGCCAGTTTCGAGAAGACTTTAACAGCCAGAATCCCAGCCTGCCACTGAACGaa  <  1:233107/58‑1 (MQ=255)     cATCAGCCAGTTTCGAGAAGACTTTAACAGCCAGAATCCCAGCCTGCCACTGAACGaa  <  1:1565195/58‑1 (MQ=255)     cATCAGCCAGTTTCGAGAAGACTTTAACAGCCAGAATCCCAGCCTGCCACTGAACGaa  <  1:241503/58‑1 (MQ=255)     cATCACCCAGTTTCGAGAAGACTTTAACAGCCAGAATCCCAGCCTGCCACTGAACGaa  <  1:2711836/58‑1 (MQ=255)      aTCAGCCAGTTTCGAGAAGACTTTAACAGCCAGAATCCCAGCCTGCCACTGAACGaa  <  1:392085/57‑1 (MQ=255)      aTCAGCCAGTTTCGAGAAGACTTTAACAGCCAGAATCCCAGCCTGCCACTGAACGaa  <  1:532610/57‑1 (MQ=255)      aTCAGCCAGTTTCGAGAAGACTTTAACAGCCAGAATCCCAGCCTGCCACTGAACGaa  <  1:1633244/57‑1 (MQ=255)               tttCGAGAAGACTTTAACAGCCAGAATCCCAGCCTGCCACTGAACGaa  <  1:2336560/48‑1 (MQ=255)                                                              | TCTCCATCAGCCAGTTTCGAGAAGACTTTAACAGCCAGAATCCCAGCCTGCCACTGAACGAA  >  minE/2319821‑2319882

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑