Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	minE	2561940	2561993	54	58 [0]	[0] 25	lldR	DNA‑binding transcriptional repressor

TATGCTTCACTGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACG  >  minE/2561881‑2561939                                                           | tATGCTTCACTGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACg  <  1:3482217/59‑1 (MQ=255) tATGCTTCACTGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACg  <  1:2686198/59‑1 (MQ=255) tATGCTTCACTGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACg  <  1:1017190/59‑1 (MQ=255) tATGCTTCACTGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACg  <  1:274453/59‑1 (MQ=255) tATGCTTCACTGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACg  <  1:2803004/59‑1 (MQ=255) tATGCTTCACTGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACg  <  1:2836778/59‑1 (MQ=255) tATGCTTCACTGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACg  <  1:2885815/59‑1 (MQ=255) tATGCTTCACTGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACg  <  1:2946596/59‑1 (MQ=255) tATGCTTCACTGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACg  <  1:3086932/59‑1 (MQ=255) tATGCTTCACTGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACg  <  1:3347053/59‑1 (MQ=255) tATGCTTCACTGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACg  <  1:3373995/59‑1 (MQ=255) tATGCTTCACTGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACg  <  1:3376005/59‑1 (MQ=255) tATGCTTCACTGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACg  <  1:3464983/59‑1 (MQ=255) tATGCTTCACTGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACg  <  1:3472652/59‑1 (MQ=255) tATGCTTCACTGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACg  <  1:2711120/59‑1 (MQ=255) tATGCTTCACTGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACg  <  1:3562955/59‑1 (MQ=255) tATGCTTCACTGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACg  <  1:3589661/59‑1 (MQ=255) tATGCTTCACTGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACg  <  1:3607675/59‑1 (MQ=255) tATGCTTCACTGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACg  <  1:3628732/59‑1 (MQ=255) tATGCTTCACTGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACg  <  1:395412/59‑1 (MQ=255) tATGCTTCACTGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACg  <  1:485045/59‑1 (MQ=255) tATGCTTCACTGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACg  <  1:592980/59‑1 (MQ=255) tATGCTTCACTGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACg  <  1:601513/59‑1 (MQ=255) tATGCTTCACTGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACg  <  1:702813/59‑1 (MQ=255) tATGCTTCACTGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACg  <  1:896431/59‑1 (MQ=255) tATGCTTCACTGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACg  <  1:902979/59‑1 (MQ=255) tATGCTTCACTGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACg  <  1:928278/59‑1 (MQ=255) tATGCTTCACTGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACg  <  1:977392/59‑1 (MQ=255) tATGCTTCACTGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACg  <  1:2597768/59‑1 (MQ=255) tATGCTTCACTGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACg  <  1:1089594/59‑1 (MQ=255) tATGCTTCACTGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACg  <  1:1332869/59‑1 (MQ=255) tATGCTTCACTGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACg  <  1:1629037/59‑1 (MQ=255) tATGCTTCACTGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACg  <  1:1701268/59‑1 (MQ=255) tATGCTTCACTGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACg  <  1:1745984/59‑1 (MQ=255) tATGCTTCACTGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACg  <  1:1782856/59‑1 (MQ=255) tATGCTTCACTGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACg  <  1:1902223/59‑1 (MQ=255) tATGCTTCACTGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACg  <  1:1910337/59‑1 (MQ=255) tATGCTTCACTGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACg  <  1:1913883/59‑1 (MQ=255) tATGCTTCACTGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACg  <  1:1960379/59‑1 (MQ=255) tATGCTTCACTGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACg  <  1:2026116/59‑1 (MQ=255) tATGCTTCACTGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACg  <  1:2170971/59‑1 (MQ=255) tATGCTTCACTGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACg  <  1:2400247/59‑1 (MQ=255) tATGCTTCACTGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACg  <  1:2626212/59‑1 (MQ=255) tATGCTTCACTGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACg  <  1:2551134/59‑1 (MQ=255) tATGCTTCACTGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACg  <  1:2501451/59‑1 (MQ=255) tATGCTTCACTGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACg  <  1:2467021/59‑1 (MQ=255) tATGCTTCACTGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACg  <  1:245768/59‑1 (MQ=255) tATGCTTCACTGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACg  <  1:2234783/59‑1 (MQ=255) tATGCTTCACTGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACg  <  1:2367451/59‑1 (MQ=255) tATGCTTCACTGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACg  <  1:2346122/59‑1 (MQ=255) tATGCTTCACTGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACg  <  1:2343931/59‑1 (MQ=255) tATGCTTCACTGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACg  <  1:2305035/59‑1 (MQ=255) tATGCTTCACTGAGGATTGCAGGACATCGAAGAAACCGCCCATGGTTTGCAGCAGCACg  <  1:1701279/59‑1 (MQ=255)  aTGCTTCACTGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACg  <  1:788009/58‑1 (MQ=255)  aTGCTTCACTGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACg  <  1:1628522/58‑1 (MQ=255)        cACTGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCTGCACg  <  1:2119344/52‑1 (MQ=255)             aGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACg  <  1:3063726/47‑1 (MQ=255)                     aGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACg  <  1:3165385/39‑1 (MQ=255)                                                           | TATGCTTCACTGAGGATTGCAGGACATCGAAGAAACCGCGCATGGTTTGCAGCAGCACG  >  minE/2561881‑2561939

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑